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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON
Keywords ALPHA-L-FUCOSE, HYDROLASE, GLYCOSIDE HYDROLASE FAMILY 29
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2WVV     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ALPHA-L-FUCOSIDASE  A 438 3577 0
2  Protein   ALPHA-L-FUCOSIDASE  B 446 3633 0
3  Protein   ALPHA-L-FUCOSIDASE  C 443 3617 0
4  Protein   ALPHA-L-FUCOSIDASE  D 437 3562 0
5  Ligand   ALPHA-L-FUCOSIDASE  A 4 0 24
6  Ligand   ALPHA-L-FUCOSIDASE  B 4 0 25
7  Ligand   ALPHA-L-FUCOSIDASE  C 2 0 14
8  Ligand   ALPHA-L-FUCOSIDASE  D 2 0 13
9 Water     1089 0 1089
total       2865 14389 1165

Proteins
Unit 1 GLU35 ILE36 PRO37 LEU38 LYS39 TYR40 GLY41 ALA42 THR43 ASN44 GLU45 GLY46 LYS47 ARG48 GLN49 ASP50 PRO51 ALA52 MET53 GLN54 LYS55 PHE56 ARG57 ASP58 ASN59 ARG60 LEU61 GLY62 ALA63 PHE64 ILE65 HIS66 TRP67 GLY68 LEU69 TYR70 ALA71 ILE72 PRO73 GLY74 GLY75 GLU76 TRP77 ASN78 GLY79 LYS80 VAL81 TYR82 GLY83 GLY84 ALA85 ALA86 GLU87 TRP88 LEU89 LYS90 SER91 TRP92 ALA93 LYS94 VAL95 PRO96 ALA97 ASP98 GLU99 TRP100 LEU101 LYS102 LEU103 MET104 ASP105 GLN106 TRP107 ASN108 PRO109 THR110 LYS111 PHE112 ASP113 ALA114 LYS115 LYS116 TRP117 ALA118 LYS119 MET120 ALA121 LYS122 GLU123 MET124 GLY125 THR126 LYS127 TYR128 VAL129 LYS130 ILE131 THR132 THR133 LYS134 HIS135 HIS136 GLU137 GLY138 PHE139 CYS140 LEU141 TRP142 PRO143 SER144 LYS145 TYR146 THR147 LYS148 TYR149 THR150 VAL151 ALA152 ASN153 THR154 PRO155 TYR156 LYS157 ARG158 ASP159 ILE160 LEU161 GLY162 GLU163 LEU164 VAL165 LYS166 ALA167 TYR168 ASN169 ASP170 GLU171 GLY172 ILE173 ASP174 VAL175 HIS176 PHE177 TYR178 PHE179 SER180 VAL181 MET182 ASP183 TRP184 SER185 ASN186 PRO187 ASP188 TYR189 ARG190 TYR191 ASP192 ILE193 LYS194 SER195 LYS196 GLU197 ASP198 SER199 ILE200 ALA201 PHE202 SER203 ARG204 PHE205 LEU206 GLU207 PHE208 THR209 ASP210 ASN211 GLN212 LEU213 LYS214 GLU215 LEU216 ALA217 THR218 ARG219 TYR220 PRO221 THR222 VAL223 LYS224 ASP225 PHE226 TRP227 PHE228 ASP229 GLY230 THR231 TRP232 ASP233 ALA234 SER235 VAL236 LYS237 LYS238 ASN239 GLY240 TRP241 TRP242 THR243 ALA244 HIS245 ALA246 GLU247 GLN248 MET249 LEU250 LYS251 GLU252 LEU253 VAL254 PRO255 GLY256 VAL257 ALA258 ILE259 ASN260 SER261 ARG262 LEU263 ARG264 ALA265 ASP266 ASP267 LYS268 GLY269 LYS270 ARG271 HIS272 PHE273 ASP274 SER275 ASN276 GLY277 ARG278 LEU279 MET280 GLY281 ASP282 TYR283 GLU284 SER285 GLY286 TYR287 GLU288 ARG289 ARG290 LEU291 PRO292 ASP293 PRO294 VAL295 LYS296 ASP297 LEU298 LYS299 VAL300 THR301 GLN302 TRP303 ASP304 TRP305 GLU306 ALA307 CYS308 MET309 THR310 ILE311 PRO312 GLU313 ASN314 GLN315 TRP316 GLY317 TYR318 HIS319 LYS320 ASP321 TRP322 SER323 LEU324 SER325 TYR326 VAL327 LYS328 THR329 PRO330 ILE331 GLU332 VAL333 ILE334 ASP335 ARG336 ILE337 VAL338 HIS339 ALA340 VAL341 SER342 MET343 GLY344 GLY345 ASN346 MET347 VAL348 VAL349 ASN350 PHE351 GLY352 PRO353 GLN354 ALA355 ASP356 GLY357 ASP358 PHE359 ARG360 PRO361 GLU362 GLU363 LYS364 ALA365 MET366 ALA367 THR368 ALA369 ILE370 GLY371 LYS372 TRP373 MET374 ASN375 ARG376 TYR377 GLY378 LYS379 ALA380 VAL381 TYR382 ALA383 CYS384 ASP385 TYR386 ALA387 GLY388 PHE389 GLU390 LYS391 GLN392 ASP393 TRP394 GLY395 TYR396 TYR397 THR398 ARG399 GLY400 LYS401 ASN402 ASP403 GLU404 VAL405 TYR406 MET407 VAL408 VAL409 PHE410 ASN411 GLN412 PRO413 TYR414 SER415 GLU416 ARG417 LEU418 ILE419 VAL420 LYS421 THR422 PRO423 LYS424 GLY425 ILE426 THR427 VAL428 GLU429 LYS430 ALA431 THR432 LEU433 LEU434 THR435 THR436 GLY437 GLU438 ASP439 ILE440 THR441 VAL442 VAL443 GLU444 THR445 THR446 ARG447 ASN448 GLU449 TYR450 ASN451 VAL452 SER453 VAL454 PRO455 LYS456 LYS457 ASN458 PRO459 GLY460 GLU461 PRO462 TYR463 VAL464 ILE465 GLN466 LEU467 LYS468 VAL469 ARG470 ALA471 ALA472
Unit 2 GLU35 ILE36 PRO37 LEU38 LYS39 TYR40 GLY41 ALA42 THR43 ASN44 GLU45 GLY46 LYS47 ARG48 GLN49 ASP50 PRO51 ALA52 MET53 GLN54 LYS55 PHE56 ARG57 ASP58 ASN59 ARG60 LEU61 GLY62 ALA63 PHE64 ILE65 HIS66 TRP67 GLY68 LEU69 TYR70 ALA71 ILE72 PRO73 GLY74 GLY75 GLU76 TRP77 ASN78 GLY79 LYS80 VAL81 TYR82 GLY83 GLY84 ALA85 ALA86 GLU87 TRP88 LEU89 LYS90 SER91 TRP92 ALA93 LYS94 VAL95 PRO96 ALA97 ASP98 GLU99 TRP100 LEU101 LYS102 LEU103 MET104 ASP105 GLN106 TRP107 ASN108 PRO109 THR110 LYS111 PHE112 ASP113 ALA114 LYS115 LYS116 TRP117 ALA118 LYS119 MET120 ALA121 LYS122 GLU123 MET124 GLY125 THR126 LYS127 TYR128 VAL129 LYS130 ILE131 THR132 THR133 LYS134 HIS135 HIS136 GLU137 GLY138 PHE139 CYS140 LEU141 TRP142 PRO143 SER144 LYS145 TYR146 THR147 LYS148 TYR149 THR150 VAL151 ALA152 ASN153 THR154 PRO155 TYR156 LYS157 ARG158 ASP159 ILE160 LEU161 GLY162 GLU163 LEU164 VAL165 LYS166 ALA167 TYR168 ASN169 ASP170 GLU171 GLY172 ILE173 ASP174 VAL175 HIS176 PHE177 TYR178 PHE179 SER180 VAL181 MET182 ASP183 TRP184 SER185 ASN186 PRO187 ASP188 TYR189 ARG190 TYR191 ASP192 ILE193 LYS194 SER195 LYS196 GLU197 ASP198 SER199 ILE200 ALA201 PHE202 SER203 ARG204 PHE205 LEU206 GLU207 PHE208 THR209 ASP210 ASN211 GLN212 LEU213 LYS214 GLU215 LEU216 ALA217 THR218 ARG219 TYR220 PRO221 THR222 VAL223 LYS224 ASP225 PHE226 TRP227 PHE228 ASP229 GLY230 THR231 TRP232 ASP233 ALA234 SER235 VAL236 LYS237 LYS238 ASN239 GLY240 TRP241 TRP242 THR243 ALA244 HIS245 ALA246 GLU247 GLN248 MET249 LEU250 LYS251 GLU252 LEU253 VAL254 PRO255 GLY256 VAL257 ALA258 ILE259 ASN260 SER261 ARG262 LEU263 ARG264 ALA265 ASP266 ASP267 LYS268 GLY269 LYS270 ARG271 HIS272 PHE273 ASP274 SER275 ASN276 GLY277 ARG278 LEU279 MET280 GLY281 ASP282 TYR283 GLU284 SER285 GLY286 TYR287 GLU288 ARG289 ARG290 LEU291 PRO292 ASP293 PRO294 VAL295 LYS296 ASP297 LEU298 LYS299 VAL300 THR301 GLN302 TRP303 ASP304 TRP305 GLU306 ALA307 CYS308 MET309 THR310 ILE311 PRO312 GLU313 ASN314 GLN315 TRP316 GLY317 TYR318 HIS319 LYS320 ASP321 TRP322 SER323 LEU324 SER325 TYR326 VAL327 LYS328 THR329 PRO330 ILE331 GLU332 VAL333 ILE334 ASP335 ARG336 ILE337 VAL338 HIS339 ALA340 VAL341 SER342 MET343 GLY344 GLY345 ASN346 MET347 VAL348 VAL349 ASN350 PHE351 GLY352 PRO353 GLN354 ALA355 ASP356 GLY357 ASP358 PHE359 ARG360 PRO361 GLU362 GLU363 LYS364 ALA365 MET366 ALA367 THR368 ALA369 ILE370 GLY371 LYS372 TRP373 MET374 ASN375 ARG376 TYR377 GLY378 LYS379 ALA380 VAL381 TYR382 ALA383 CYS384 ASP385 TYR386 ALA387 GLY388 PHE389 GLU390 LYS391 GLN392 ASP393 TRP394 GLY395 TYR396 TYR397 THR398 ARG399 GLY400 LYS401 ASN402 ASP403 GLU404 VAL405 TYR406 MET407 VAL408 VAL409 PHE410 ASN411 GLN412 PRO413 TYR414 SER415 GLU416 ARG417 LEU418 ILE419 VAL420 LYS421 THR422 PRO423 LYS424 GLY425 ILE426 THR427 VAL428 GLU429 LYS430 ALA431 THR432 LEU433 LEU434 THR435 THR436 GLY437 GLU438 ASP439 ILE440 THR441 VAL442 VAL443 GLU444 THR445 THR446 ARG447 ASN448 GLU449 TYR450 ASN451 VAL452 SER453 VAL454 PRO455 LYS456 LYS457 ASN458 PRO459 GLY460 GLU461 PRO462 TYR463 VAL464 ILE465 GLN466 LEU467 LYS468 VAL469 ARG470 ALA471 ALA472 LYS473 LEU478 TYR479 ARG480 ASP481 ALA482 LEU483 THR484
Unit 3 GLU35 ILE36 PRO37 LEU38 LYS39 TYR40 GLY41 ALA42 THR43 ASN44 GLU45 GLY46 LYS47 ARG48 GLN49 ASP50 PRO51 ALA52 MET53 GLN54 LYS55 PHE56 ARG57 ASP58 ASN59 ARG60 LEU61 GLY62 ALA63 PHE64 ILE65 HIS66 TRP67 GLY68 LEU69 TYR70 ALA71 ILE72 PRO73 GLY74 GLY75 GLU76 TRP77 ASN78 GLY79 LYS80 VAL81 TYR82 GLY83 GLY84 ALA85 ALA86 GLU87 TRP88 LEU89 LYS90 SER91 TRP92 ALA93 LYS94 VAL95 PRO96 ALA97 ASP98 GLU99 TRP100 LEU101 LYS102 LEU103 MET104 ASP105 GLN106 TRP107 ASN108 PRO109 THR110 LYS111 PHE112 ASP113 ALA114 LYS115 LYS116 TRP117 ALA118 LYS119 MET120 ALA121 LYS122 GLU123 MET124 GLY125 THR126 LYS127 TYR128 VAL129 LYS130 ILE131 THR132 THR133 LYS134 HIS135 HIS136 GLU137 GLY138 PHE139 CYS140 LEU141 TRP142 PRO143 SER144 LYS145 TYR146 THR147 LYS148 TYR149 THR150 VAL151 ALA152 ASN153 THR154 PRO155 TYR156 LYS157 ARG158 ASP159 ILE160 LEU161 GLY162 GLU163 LEU164 VAL165 LYS166 ALA167 TYR168 ASN169 ASP170 GLU171 GLY172 ILE173 ASP174 VAL175 HIS176 PHE177 TYR178 PHE179 SER180 VAL181 MET182 ASP183 TRP184 SER185 ASN186 PRO187 ASP188 TYR189 ARG190 TYR191 ASP192 ILE193 LYS194 SER195 LYS196 GLU197 ASP198 SER199 ILE200 ALA201 PHE202 SER203 ARG204 PHE205 LEU206 GLU207 PHE208 THR209 ASP210 ASN211 GLN212 LEU213 LYS214 GLU215 LEU216 ALA217 THR218 ARG219 TYR220 PRO221 THR222 VAL223 LYS224 ASP225 PHE226 TRP227 PHE228 ASP229 GLY230 THR231 TRP232 ASP233 ALA234 SER235 VAL236 LYS237 LYS238 ASN239 GLY240 TRP241 TRP242 THR243 ALA244 HIS245 ALA246 GLU247 GLN248 MET249 LEU250 LYS251 GLU252 LEU253 VAL254 PRO255 GLY256 VAL257 ALA258 ILE259 ASN260 SER261 ARG262 LEU263 ARG264 ALA265 ASP266 ASP267 LYS268 GLY269 LYS270 ARG271 HIS272 PHE273 ASP274 SER275 ASN276 GLY277 ARG278 LEU279 MET280 GLY281 ASP282 TYR283 GLU284 SER285 GLY286 TYR287 GLU288 ARG289 ARG290 LEU291 PRO292 ASP293 PRO294 VAL295 LYS296 ASP297 LEU298 LYS299 VAL300 THR301 GLN302 TRP303 ASP304 TRP305 GLU306 ALA307 CYS308 MET309 THR310 ILE311 PRO312 GLU313 ASN314 GLN315 TRP316 GLY317 TYR318 HIS319 LYS320 ASP321 TRP322 SER323 LEU324 SER325 TYR326 VAL327 LYS328 THR329 PRO330 ILE331 GLU332 VAL333 ILE334 ASP335 ARG336 ILE337 VAL338 HIS339 ALA340 VAL341 SER342 MET343 GLY344 GLY345 ASN346 MET347 VAL348 VAL349 ASN350 PHE351 GLY352 PRO353 GLN354 ALA355 ASP356 GLY357 ASP358 PHE359 ARG360 PRO361 GLU362 GLU363 LYS364 ALA365 MET366 ALA367 THR368 ALA369 ILE370 GLY371 LYS372 TRP373 MET374 ASN375 ARG376 TYR377 GLY378 LYS379 ALA380 VAL381 TYR382 ALA383 CYS384 ASP385 TYR386 ALA387 GLY388 PHE389 GLU390 LYS391 GLN392 ASP393 TRP394 GLY395 TYR396 TYR397 THR398 ARG399 GLY400 LYS401 ASN402 ASP403 GLU404 VAL405 TYR406 MET407 VAL408 VAL409 PHE410 ASN411 GLN412 PRO413 TYR414 SER415 GLU416 ARG417 LEU418 ILE419 VAL420 LYS421 THR422 PRO423 LYS424 GLY425 ILE426 THR427 VAL428 GLU429 LYS430 ALA431 THR432 LEU433 LEU434 THR435 THR436 GLY437 GLU438 ASP439 ILE440 THR441 VAL442 VAL443 GLU444 THR445 THR446 ARG447 ASN448 GLU449 TYR450 ASN451 VAL452 SER453 VAL454 PRO455 LYS456 LYS457 ASN458 PRO459 GLY460 GLU461 PRO462 TYR463 VAL464 ILE465 GLN466 LEU467 LYS468 VAL469 ARG470 ALA471 TYR479 ARG480 ASP481 ALA482 LEU483 THR484
Unit 4 GLU35 ILE36 PRO37 LEU38 LYS39 TYR40 GLY41 ALA42 THR43 ASN44 GLU45 GLY46 LYS47 ARG48 GLN49 ASP50 PRO51 ALA52 MET53 GLN54 LYS55 PHE56 ARG57 ASP58 ASN59 ARG60 LEU61 GLY62 ALA63 PHE64 ILE65 HIS66 TRP67 GLY68 LEU69 TYR70 ALA71 ILE72 PRO73 GLY74 GLY75 GLU76 TRP77 ASN78 GLY79 LYS80 VAL81 TYR82 GLY83 GLY84 ALA85 ALA86 GLU87 TRP88 LEU89 LYS90 SER91 TRP92 ALA93 LYS94 VAL95 PRO96 ALA97 ASP98 GLU99 TRP100 LEU101 LYS102 LEU103 MET104 ASP105 GLN106 TRP107 ASN108 PRO109 THR110 LYS111 PHE112 ASP113 ALA114 LYS115 LYS116 TRP117 ALA118 LYS119 MET120 ALA121 LYS122 GLU123 MET124 GLY125 THR126 LYS127 TYR128 VAL129 LYS130 ILE131 THR132 THR133 LYS134 HIS135 HIS136 GLU137 GLY138 PHE139 CYS140 LEU141 TRP142 PRO143 SER144 LYS145 TYR146 THR147 LYS148 TYR149 THR150 VAL151 ALA152 ASN153 THR154 PRO155 TYR156 LYS157 ARG158 ASP159 ILE160 LEU161 GLY162 GLU163 LEU164 VAL165 LYS166 ALA167 TYR168 ASN169 ASP170 GLU171 GLY172 ILE173 ASP174 VAL175 HIS176 PHE177 TYR178 PHE179 SER180 VAL181 MET182 ASP183 TRP184 SER185 ASN186 PRO187 ASP188 TYR189 ARG190 TYR191 ASP192 ILE193 LYS194 SER195 LYS196 GLU197 ASP198 SER199 ILE200 ALA201 PHE202 SER203 ARG204 PHE205 LEU206 GLU207 PHE208 THR209 ASP210 ASN211 GLN212 LEU213 LYS214 GLU215 LEU216 ALA217 THR218 ARG219 TYR220 PRO221 THR222 VAL223 LYS224 ASP225 PHE226 TRP227 PHE228 ASP229 GLY230 THR231 TRP232 ASP233 ALA234 SER235 VAL236 LYS237 LYS238 ASN239 GLY240 TRP241 TRP242 THR243 ALA244 HIS245 ALA246 GLU247 GLN248 MET249 LEU250 LYS251 GLU252 LEU253 VAL254 PRO255 GLY256 VAL257 ALA258 ILE259 ASN260 SER261 ARG262 LEU263 ARG264 ALA265 ASP266 ASP267 LYS268 GLY269 LYS270 ARG271 HIS272 PHE273 ASP274 SER275 ASN276 GLY277 ARG278 LEU279 MET280 GLY281 ASP282 TYR283 GLU284 SER285 GLY286 TYR287 GLU288 ARG289 ARG290 LEU291 PRO292 ASP293 PRO294 VAL295 LYS296 ASP297 LEU298 LYS299 VAL300 THR301 GLN302 TRP303 ASP304 TRP305 GLU306 ALA307 CYS308 MET309 THR310 ILE311 PRO312 GLU313 ASN314 GLN315 TRP316 GLY317 TYR318 HIS319 LYS320 ASP321 TRP322 SER323 LEU324 SER325 TYR326 VAL327 LYS328 THR329 PRO330 ILE331 GLU332 VAL333 ILE334 ASP335 ARG336 ILE337 VAL338 HIS339 ALA340 VAL341 SER342 MET343 GLY344 GLY345 ASN346 MET347 VAL348 VAL349 ASN350 PHE351 GLY352 PRO353 GLN354 ALA355 ASP356 GLY357 ASP358 PHE359 ARG360 PRO361 GLU362 GLU363 LYS364 ALA365 MET366 ALA367 THR368 ALA369 ILE370 GLY371 LYS372 TRP373 MET374 ASN375 ARG376 TYR377 GLY378 LYS379 ALA380 VAL381 TYR382 ALA383 CYS384 ASP385 TYR386 ALA387 GLY388 PHE389 GLU390 LYS391 GLN392 ASP393 TRP394 GLY395 TYR396 TYR397 THR398 ARG399 GLY400 LYS401 ASN402 ASP403 GLU404 VAL405 TYR406 MET407 VAL408 VAL409 PHE410 ASN411 GLN412 PRO413 TYR414 SER415 GLU416 ARG417 LEU418 ILE419 VAL420 LYS421 THR422 PRO423 LYS424 GLY425 ILE426 THR427 VAL428 GLU429 LYS430 ALA431 THR432 LEU433 LEU434 THR435 THR436 GLY437 GLU438 ASP439 ILE440 THR441 VAL442 VAL443 GLU444 THR445 THR446 ARG447 ASN448 GLU449 TYR450 ASN451 VAL452 SER453 VAL454 PRO455 LYS456 LYS457 ASN458 PRO459 GLY460 GLU461 PRO462 TYR463 VAL464 ILE465 GLN466 LEU467 LYS468 VAL469 ARG470 ALA471

Ligands
Unit 5 TRS1473 SO41474 SO41475 GOL1476
Unit 6 TRS1709 GOL1710 GOL1711 SO41712
Unit 7 TRS1709 GOL1710
Unit 8 TRS1472 SO41473

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany