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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SYNAPTIC PROTEIN NEUROLIGIN-4 IN COMPLE NEUREXIN-BETA 1: ALTERNATIVE REFINEMENT
Keywords TRANSMEMBRANE, DISULFIDE BOND, ALPHA/BETA-HYDROLASE CHOLINES AUTISM BRAIN, ALTERNATIVE PROMOTER USAGE, MEMBRANE, GLYCOPR CELL ADHESION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2WQZ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NEUROLIGIN 4, X-LINKED  A 545 4310 0
2  Protein   NEUROLIGIN 4, X-LINKED  B 544 4302 0
3  Protein   NEUREXIN-1-BETA  C 177 1359 0
4  Protein   NEUREXIN-1-BETA  D 177 1359 0
5  Ligand   NEUROLIGIN 4, X-LINKED  A 2 0 28
6  Ligand   NEUREXIN-1-BETA  C 1 0 1
7  Ligand   NEUREXIN-1-BETA  D 1 0 1
total       1447 11330 30

Proteins
Unit 1 ASP36 ASP37 ASP38 LYS39 LEU40 ALA41 ALA42 ALA43 GLN44 TYR45 PRO46 VAL47 VAL48 ASN49 THR50 ASN51 TYR52 GLY53 LYS54 ILE55 ARG56 GLY57 LEU58 ARG59 THR60 PRO61 LEU62 PRO63 ASN64 GLU65 ILE66 LEU67 GLY68 PRO69 VAL70 GLU71 GLN72 TYR73 LEU74 GLY75 VAL76 PRO77 TYR78 ALA79 SER80 PRO81 PRO82 THR83 GLY84 GLU85 ARG86 ARG87 PHE88 GLN89 PRO90 PRO91 GLU92 PRO93 PRO94 SER95 SER96 TRP97 THR98 GLY99 ILE100 ARG101 ASN102 THR103 THR104 GLN105 PHE106 ALA107 ALA108 VAL109 CYS110 PRO111 GLN112 HIS113 LEU114 ASP115 GLU116 ARG117 SER118 LEU119 LEU120 HIS121 ASP122 MET123 LEU124 PRO125 ILE126 TRP127 PHE128 THR129 ALA130 ASN131 LEU132 ASP133 THR134 LEU135 MET136 THR137 TYR138 VAL139 GLN140 ASP141 GLN142 ASN143 GLU144 ASP145 CYS146 LEU147 TYR148 LEU149 ASN150 ILE151 TYR152 VAL153 PRO154 THR155 GLU156 ASP157 ASP158 ILE159 HIS160 SER164 LYS165 LYS166 PRO167 VAL168 MET169 VAL170 TYR171 ILE172 HIS173 GLY174 GLY175 SER176 TYR177 MET178 GLU179 GLY180 THR181 GLY182 ASN183 MET184 ILE185 ASP186 GLY187 SER188 ILE189 LEU190 ALA191 SER192 TYR193 GLY194 ASN195 VAL196 ILE197 VAL198 ILE199 THR200 ILE201 ASN202 TYR203 ARG204 LEU205 GLY206 ILE207 LEU208 GLY209 PHE210 LEU211 SER212 THR213 GLY214 ASP215 GLN216 ALA217 ALA218 LYS219 GLY220 ASN221 TYR222 GLY223 LEU224 LEU225 ASP226 GLN227 ILE228 GLN229 ALA230 LEU231 ARG232 TRP233 ILE234 GLU235 GLU236 ASN237 VAL238 GLY239 ALA240 PHE241 GLY242 GLY243 ASP244 PRO245 LYS246 ARG247 VAL248 THR249 ILE250 PHE251 GLY252 SER253 GLY254 ALA255 GLY256 ALA257 SER258 CYS259 VAL260 SER261 LEU262 LEU263 THR264 LEU265 SER266 HIS267 TYR268 SER269 GLU270 GLY271 LEU272 PHE273 GLN274 LYS275 ALA276 ILE277 ILE278 GLN279 SER280 GLY281 THR282 ALA283 LEU284 SER285 SER286 TRP287 ALA288 VAL289 ASN290 TYR291 GLN292 PRO293 ALA294 LYS295 TYR296 THR297 ARG298 ILE299 LEU300 ALA301 ASP302 LYS303 VAL304 GLY305 CYS306 ASN307 MET308 LEU309 ASP310 THR311 THR312 ASP313 MET314 VAL315 GLU316 CYS317 LEU318 ARG319 ASN320 LYS321 ASN322 TYR323 LYS324 GLU325 LEU326 ILE327 GLN328 GLN329 THR330 ILE331 THR332 PRO333 ALA334 THR335 TYR336 HIS337 ILE338 ALA339 PHE340 GLY341 PRO342 VAL343 ILE344 ASP345 GLY346 ASP347 VAL348 ILE349 PRO350 ASP351 ASP352 PRO353 GLN354 ILE355 LEU356 MET357 GLU358 GLN359 GLY360 GLU361 PHE362 LEU363 ASN364 TYR365 ASP366 ILE367 MET368 LEU369 GLY370 VAL371 ASN372 GLN373 GLY374 GLU375 GLY376 LEU377 LYS378 PHE379 VAL380 ASP381 GLY382 ILE383 VAL384 ASP385 ASN386 GLU387 ASP388 GLY389 VAL390 THR391 PRO392 ASN393 ASP394 PHE395 ASP396 PHE397 SER398 VAL399 SER400 ASN401 PHE402 VAL403 ASP404 ASN405 LEU406 TYR407 GLY408 TYR409 PRO410 GLU411 GLY412 LYS413 ASP414 THR415 LEU416 ARG417 GLU418 THR419 ILE420 LYS421 PHE422 MET423 TYR424 THR425 ASP426 TRP427 ALA428 ASP429 LYS430 GLU431 ASN432 PRO433 GLU434 THR435 ARG436 ARG437 LYS438 THR439 LEU440 VAL441 ALA442 LEU443 PHE444 THR445 ASP446 HIS447 GLN448 TRP449 VAL450 ALA451 PRO452 ALA453 VAL454 ALA455 THR456 ALA457 ASP458 LEU459 HIS460 ALA461 GLN462 TYR463 GLY464 SER465 PRO466 THR467 TYR468 PHE469 TYR470 ALA471 PHE472 TYR473 HIS474 HIS475 CYS476 GLN477 SER478 GLU479 MET480 LYS481 PRO482 SER483 TRP484 ALA485 ASP486 SER487 ALA488 HIS489 GLY490 ASP491 GLU492 VAL493 PRO494 TYR495 VAL496 PHE497 GLY498 ILE499 PRO500 MET501 ILE502 GLY503 PRO504 THR505 GLU506 LEU507 PHE508 SER509 CYS510 ASN511 PHE512 SER513 LYS514 ASN515 ASP516 VAL517 MET518 LEU519 SER520 ALA521 VAL522 VAL523 MET524 THR525 TYR526 TRP527 THR528 ASN529 PHE530 ALA531 LYS532 THR533 GLY534 ASP535 PRO536 ASN537 GLN538 PRO539 GLU555 GLU556 VAL557 ALA558 TRP559 SER560 ARG561 TYR562 ASN563 PRO564 LYS565 ASP566 GLN567 LEU568 TYR569 LEU570 HIS571 ILE572 GLY573 LEU574 LYS575 PRO576 ARG577 VAL578 ARG579 ASP580 HIS581 TYR582 ARG583 ALA584 THR585 LYS586 VAL587 ALA588 PHE589 TRP590 LEU591 GLU592 LEU593 VAL594 PRO595 HIS596 LEU597 HIS598
Unit 2 ALA41 ALA42 ALA43 GLN44 TYR45 PRO46 VAL47 VAL48 ASN49 THR50 ASN51 TYR52 GLY53 LYS54 ILE55 ARG56 GLY57 LEU58 ARG59 THR60 PRO61 LEU62 PRO63 ASN64 GLU65 ILE66 LEU67 GLY68 PRO69 VAL70 GLU71 GLN72 TYR73 LEU74 GLY75 VAL76 PRO77 TYR78 ALA79 SER80 PRO81 PRO82 THR83 GLY84 GLU85 ARG86 ARG87 PHE88 GLN89 PRO90 PRO91 GLU92 PRO93 PRO94 SER95 SER96 TRP97 THR98 GLY99 ILE100 ARG101 ASN102 THR103 THR104 GLN105 PHE106 ALA107 ALA108 VAL109 CYS110 PRO111 GLN112 HIS113 LEU114 ASP115 GLU116 ARG117 SER118 LEU119 LEU120 HIS121 ASP122 MET123 LEU124 PRO125 ILE126 TRP127 PHE128 THR129 ALA130 ASN131 LEU132 ASP133 THR134 LEU135 MET136 THR137 TYR138 VAL139 GLN140 ASP141 GLN142 ASN143 GLU144 ASP145 CYS146 LEU147 TYR148 LEU149 ASN150 ILE151 TYR152 VAL153 PRO154 THR155 GLU156 ASP157 ASP158 ILE159 HIS160 ASP161 GLN162 ASN163 SER164 LYS165 LYS166 PRO167 VAL168 MET169 VAL170 TYR171 ILE172 HIS173 GLY174 GLY175 SER176 TYR177 MET178 GLU179 GLY180 THR181 GLY182 ASN183 MET184 ILE185 ASP186 GLY187 SER188 ILE189 LEU190 ALA191 SER192 TYR193 GLY194 ASN195 VAL196 ILE197 VAL198 ILE199 THR200 ILE201 ASN202 TYR203 ARG204 LEU205 GLY206 ILE207 LEU208 GLY209 PHE210 LEU211 SER212 THR213 GLY214 ASP215 GLN216 ALA217 ALA218 LYS219 GLY220 ASN221 TYR222 GLY223 LEU224 LEU225 ASP226 GLN227 ILE228 GLN229 ALA230 LEU231 ARG232 TRP233 ILE234 GLU235 GLU236 ASN237 VAL238 GLY239 ALA240 PHE241 GLY242 GLY243 ASP244 PRO245 LYS246 ARG247 VAL248 THR249 ILE250 PHE251 GLY252 SER253 GLY254 ALA255 GLY256 ALA257 SER258 CYS259 VAL260 SER261 LEU262 LEU263 THR264 LEU265 SER266 HIS267 TYR268 SER269 GLU270 GLY271 LEU272 PHE273 GLN274 LYS275 ALA276 ILE277 ILE278 GLN279 SER280 GLY281 THR282 ALA283 LEU284 SER285 SER286 TRP287 ALA288 VAL289 ASN290 TYR291 GLN292 PRO293 ALA294 LYS295 TYR296 THR297 ARG298 ILE299 LEU300 ALA301 ASP302 LYS303 VAL304 GLY305 CYS306 ASN307 MET308 LEU309 ASP310 THR311 THR312 ASP313 MET314 VAL315 GLU316 CYS317 LEU318 ARG319 ASN320 LYS321 ASN322 TYR323 LYS324 GLU325 LEU326 ILE327 GLN328 GLN329 THR330 ILE331 THR332 PRO333 ALA334 THR335 TYR336 HIS337 ILE338 ALA339 PHE340 GLY341 PRO342 VAL343 ILE344 ASP345 GLY346 ASP347 VAL348 ILE349 PRO350 ASP351 ASP352 PRO353 GLN354 ILE355 LEU356 MET357 GLU358 GLN359 GLY360 GLU361 PHE362 LEU363 ASN364 TYR365 ASP366 ILE367 MET368 LEU369 GLY370 VAL371 ASN372 GLN373 GLY374 GLU375 GLY376 LEU377 LYS378 PHE379 VAL380 ASP381 GLY382 ILE383 VAL384 ASP385 ASN386 GLU387 ASP388 GLY389 VAL390 THR391 PRO392 ASN393 ASP394 PHE395 ASP396 PHE397 SER398 VAL399 SER400 ASN401 PHE402 VAL403 ASP404 ASN405 LEU406 TYR407 GLY408 TYR409 PRO410 GLU411 GLY412 LYS413 ASP414 THR415 LEU416 ARG417 GLU418 THR419 ILE420 LYS421 PHE422 MET423 TYR424 THR425 ASP426 TRP427 ALA428 ASP429 LYS430 GLU431 ASN432 PRO433 GLU434 THR435 ARG436 ARG437 LYS438 THR439 LEU440 VAL441 ALA442 LEU443 PHE444 THR445 ASP446 HIS447 GLN448 TRP449 VAL450 ALA451 PRO452 ALA453 VAL454 ALA455 THR456 ALA457 ASP458 LEU459 HIS460 ALA461 GLN462 TYR463 GLY464 SER465 PRO466 THR467 TYR468 PHE469 TYR470 ALA471 PHE472 TYR473 HIS474 HIS475 CYS476 GLN477 SER478 GLU479 MET480 LYS481 PRO482 SER483 TRP484 ALA485 ASP486 SER487 ALA488 HIS489 GLY490 ASP491 GLU492 VAL493 PRO494 TYR495 VAL496 PHE497 GLY498 ILE499 PRO500 MET501 ILE502 GLY503 PRO504 THR505 GLU506 LEU507 PHE508 SER509 CYS510 ASN511 PHE512 SER513 LYS514 ASN515 ASP516 VAL517 MET518 LEU519 SER520 ALA521 VAL522 VAL523 MET524 THR525 TYR526 TRP527 THR528 ASN529 PHE530 ALA531 LYS532 THR533 GLY534 ASP535 PRO536 ASN537 GLN538 PRO539 GLU555 GLU556 VAL557 ALA558 TRP559 SER560 ARG561 TYR562 ASN563 PRO564 LYS565 ASP566 GLN567 LEU568 TYR569 LEU570 HIS571 ILE572 GLY573 LEU574 LYS575 PRO576 ARG577 VAL578 ARG579 ASP580 HIS581 TYR582 ARG583 ALA584 THR585 LYS586 VAL587 ALA588 PHE589 TRP590 LEU591 GLU592 LEU593 VAL594 PRO595 HIS596 LEU597 HIS598 ASN599
Unit 3 HIS82 ALA83 GLY84 THR85 THR86 TYR87 ILE88 PHE89 SER90 LYS91 GLY92 GLY93 GLY94 GLN95 ILE96 THR97 TYR98 LYS99 TRP100 PRO101 PRO102 ASN103 ASP104 ARG105 PRO106 SER107 THR108 ARG109 ALA110 ASP111 ARG112 LEU113 ALA114 ILE115 GLY116 PHE117 SER118 THR119 VAL120 GLN121 LYS122 GLU123 ALA124 VAL125 LEU126 VAL127 ARG128 VAL129 ASP130 SER131 SER132 SER133 GLY134 LEU135 GLY136 ASP137 TYR138 LEU139 GLU140 LEU141 HIS142 ILE143 HIS144 GLN145 GLY146 LYS147 ILE148 GLY149 VAL150 LYS151 PHE152 ASN153 VAL154 GLY155 THR156 ASP157 ASP158 ILE159 ALA160 ILE161 GLU162 GLU163 SER164 ASN165 ALA166 ILE167 ILE168 ASN169 ASP170 GLY171 LYS172 TYR173 HIS174 VAL175 VAL176 ARG177 PHE178 THR179 ARG180 SER181 GLY182 GLY183 ASN184 ALA185 THR186 LEU187 GLN188 VAL189 ASP190 SER191 TRP192 PRO193 VAL194 ILE195 GLU196 ARG197 TYR198 PRO199 ALA200 GLY231 ARG232 GLN233 LEU234 THR235 ILE236 PHE237 ASN238 SER239 GLN240 ALA241 THR242 ILE243 ILE244 ILE245 GLY246 GLY247 LYS248 GLU249 GLN250 GLY251 GLN252 PRO253 PHE254 GLN255 GLY256 GLN257 LEU258 SER259 GLY260 LEU261 TYR262 TYR263 ASN264 GLY265 LEU266 LYS267 VAL268 LEU269 ASN270 MET271 ALA272 ALA273 GLU274 ASN275 ASP276 ALA277 ASN278 ILE279 ALA280 ILE281 VAL282 GLY283 ASN284 VAL285 ARG286 LEU287 VAL288
Unit 4 HIS82 ALA83 GLY84 THR85 THR86 TYR87 ILE88 PHE89 SER90 LYS91 GLY92 GLY93 GLY94 GLN95 ILE96 THR97 TYR98 LYS99 TRP100 PRO101 PRO102 ASN103 ASP104 ARG105 PRO106 SER107 THR108 ARG109 ALA110 ASP111 ARG112 LEU113 ALA114 ILE115 GLY116 PHE117 SER118 THR119 VAL120 GLN121 LYS122 GLU123 ALA124 VAL125 LEU126 VAL127 ARG128 VAL129 ASP130 SER131 SER132 SER133 GLY134 LEU135 GLY136 ASP137 TYR138 LEU139 GLU140 LEU141 HIS142 ILE143 HIS144 GLN145 GLY146 LYS147 ILE148 GLY149 VAL150 LYS151 PHE152 ASN153 VAL154 GLY155 THR156 ASP157 ASP158 ILE159 ALA160 ILE161 GLU162 GLU163 SER164 ASN165 ALA166 ILE167 ILE168 ASN169 ASP170 GLY171 LYS172 TYR173 HIS174 VAL175 VAL176 ARG177 PHE178 THR179 ARG180 SER181 GLY182 GLY183 ASN184 ALA185 THR186 LEU187 GLN188 VAL189 ASP190 SER191 TRP192 PRO193 VAL194 ILE195 GLU196 ARG197 TYR198 PRO199 ALA200 GLY231 ARG232 GLN233 LEU234 THR235 ILE236 PHE237 ASN238 SER239 GLN240 ALA241 THR242 ILE243 ILE244 ILE245 GLY246 GLY247 LYS248 GLU249 GLN250 GLY251 GLN252 PRO253 PHE254 GLN255 GLY256 GLN257 LEU258 SER259 GLY260 LEU261 TYR262 TYR263 ASN264 GLY265 LEU266 LYS267 VAL268 LEU269 ASN270 MET271 ALA272 ALA273 GLU274 ASN275 ASP276 ALA277 ASN278 ILE279 ALA280 ILE281 VAL282 GLY283 ASN284 VAL285 ARG286 LEU287 VAL288

Ligands
Unit 5 NAG1599 NAG1600
Unit 6 CA1289
Unit 7 CA1289

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany