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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE CATALYTIC MODULE OF A FAMILY 98 GLY HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE SP3-BS71 (SP3GH98) WITH THE B-TRISACCHARIDE BLOOD GROUP ANTIGEN.
Keywords GLYCOSIDE HYDROLASE, STREPTOCOCCUS PNEUMONIAE, HYDROLASE, FU UTILIZATION, BLOOD GROUP ANTIGEN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2WMJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FUCOLECTIN-RELATED PROTEIN  A 572 4681 0
2  Protein   FUCOLECTIN-RELATED PROTEIN  B 571 4673 0
3  Ligand    C 3 0 33
4  Ligand    D 3 0 33
5 Water     980 0 980
total       2129 9354 1046
Proteins
Unit 1 VAL422 ASP423 LYS424 ARG425 ARG426 GLU427 ILE428 ASN429 ASN430 GLU431 HIS432 PRO433 LEU434 LEU435 MET436 MET437 PRO438 LEU439 TYR440 ALA441 ASN442 GLY443 GLU444 GLU445 PHE446 ASN447 GLN448 GLY449 LYS450 TYR451 THR452 PHE453 TRP454 GLY455 GLY456 ASP457 THR458 LEU459 THR460 GLY461 LYS462 TRP463 GLU464 ASN465 ILE466 PRO467 ASP468 ASP469 LEU470 LYS471 PRO472 TYR473 THR474 VAL475 ILE476 GLN477 LEU478 HIS479 PRO480 ASP481 ASP482 LEU483 PRO484 LYS485 ARG486 ASP487 GLY488 ALA489 ALA490 ARG491 ASP492 PHE493 TYR494 GLU495 HIS496 MET497 LEU498 GLU499 GLU500 ALA501 ALA502 LYS503 TYR504 VAL505 ASN506 PRO507 LYS508 THR509 GLY510 LYS511 ASN512 GLU513 PRO514 ILE515 PRO516 VAL517 ILE518 LEU519 THR520 VAL521 TYR522 THR523 ALA524 GLY525 ASN526 MET527 PRO528 TYR529 TYR530 THR531 SER532 ALA533 HIS534 TRP535 LEU536 SER537 THR538 SER539 TRP540 ILE541 ASP542 LYS543 MET544 TYR545 GLN546 LYS547 TYR548 PRO549 ASN550 LEU551 HIS552 GLY553 ILE554 PHE555 SER556 THR557 GLU558 ASN559 TYR560 TRP561 ILE562 TRP563 ALA564 ASN565 ASP566 ILE567 GLU568 ASN569 LYS570 ALA571 ALA572 ASP573 TYR574 LEU575 LYS576 VAL577 SER578 ALA579 LYS580 ASN581 GLY582 GLY583 TYR584 PHE585 ILE586 TRP587 ALA588 GLU589 GLN590 ASN591 ASN592 GLY593 SER594 ALA595 ILE596 GLU597 LYS598 ALA599 PHE600 GLY601 LYS602 ASN603 GLY604 LYS605 ILE606 ALA607 PHE608 GLN609 LYS610 SER611 VAL612 ASP613 LYS614 TYR615 TRP616 LYS617 ASN618 LEU619 ILE620 PHE621 MET622 PHE623 LYS624 ASN625 THR626 PRO627 ALA628 ALA629 GLU630 GLY631 ASN632 ASP633 SER634 THR635 THR636 GLU637 SER638 TYR639 MET640 LYS641 GLY642 LEU643 TRP644 LEU645 SER646 ASN647 HIS648 THR649 TYR650 GLN651 TRP652 GLY653 GLY654 LEU655 MET656 ASP657 THR658 TRP659 LYS660 TRP661 TYR662 GLU663 THR664 GLY665 LYS666 TRP667 LYS668 LEU669 PHE670 ALA671 SER672 GLY673 ASN674 ILE675 GLY676 LYS677 SER678 GLN679 GLY680 ASP681 ARG682 GLN683 TRP684 LEU685 THR686 GLU687 PRO688 GLU689 SER690 MET691 LEU692 GLY693 GLU694 GLU695 ALA696 LEU697 GLY698 VAL699 TYR700 LEU701 ASN702 GLY703 GLY704 VAL705 VAL706 TYR707 ASN708 PHE709 GLU710 HIS711 PRO712 ALA713 TYR714 THR715 TYR716 GLY717 VAL718 ASN719 ASN720 LYS721 GLU722 SER723 LEU724 LEU725 PHE726 SER727 GLU728 VAL729 ILE730 LYS731 GLU732 PHE733 PHE734 ARG735 TYR736 VAL737 ILE738 ALA739 HIS740 PRO741 ALA742 PRO743 SER744 LYS745 GLU746 LYS747 VAL748 LEU749 GLU750 ASP751 THR752 LYS753 VAL754 PHE755 ILE756 HIS757 GLY758 ASP759 TYR760 SER761 ASN762 LYS763 GLY764 ASN765 GLY766 LYS767 PHE768 PHE769 VAL770 ASN771 VAL772 ASN773 THR774 ASP775 ARG776 GLU777 GLN778 THR779 PRO780 LEU781 TYR782 MET783 THR784 GLY785 ARG786 TYR787 ASN788 VAL789 ILE790 PRO791 ALA792 ILE793 PRO794 GLY795 VAL796 LEU797 LYS798 THR799 ASP800 ILE813 GLN814 ILE815 LYS816 GLU817 ILE818 THR819 SER820 PRO821 GLU822 PHE823 SER824 SER825 THR826 GLN827 ALA828 ARG829 LYS830 GLU831 TYR832 LEU833 ASN834 LYS835 LEU836 TYR837 PRO838 MET839 ASN840 TYR841 GLU842 GLY843 ASP844 ILE845 PHE846 ALA847 GLN848 LYS849 LEU850 ASP851 ASN852 ARG853 TRP854 PHE855 VAL856 TYR857 ASN858 TYR859 LYS860 VAL861 ASN862 GLU863 ASN864 VAL865 LYS866 GLN867 THR868 GLY869 LYS870 LEU871 LYS872 PHE873 ASN874 SER875 LEU876 GLU877 MET878 ASN879 VAL880 GLU881 PHE882 GLU883 PRO884 HIS885 THR886 TYR887 GLY888 ILE889 PHE890 GLU891 ARG892 ILE893 SER894 ASN895 GLY896 LEU897 LYS898 VAL899 ASN900 LEU901 ASN902 ASN903 PHE904 ARG905 THR906 ASN907 LYS908 ASP909 SER910 LEU911 TRP912 SER913 ASN914 ALA915 GLN916 ASP917 ALA918 ASN919 GLN920 ALA921 LYS922 LYS923 LEU924 PRO925 GLN926 LEU927 THR928 LYS929 LYS930 GLY931 ALA932 ILE933 LYS934 TRP935 ILE936 GLU937 GLU938 HIS939 TYR940 ILE941 LYS942 ASP943 THR944 GLN945 PHE946 GLY947 GLU948 LYS949 ARG950 VAL951 THR952 LYS953 ILE954 VAL955 LEU956 ARG957 GLY958 ILE959 ASP960 LYS961 LEU962 PRO963 THR964 ILE965 HIS966 SER967 LEU968 SER969 GLY970 THR971 ASN972 ASN973 SER974 TYR975 ASP976 GLN977 PRO978 SER979 LEU980 ASN981 PHE982 ASP983 GLN984 LYS985 ASN986 HIS987 MET988 VAL989 THR990 ILE991 THR992 ILE993 ASN994 SER995 ASN996 GLY997 ASN998 LEU999 GLU1000 PHE1001 GLU1002 LEU1003 HIS1004 PHE1005
Unit 2 VAL422 ASP423 LYS424 ARG425 ARG426 GLU427 ILE428 ASN429 ASN430 GLU431 HIS432 PRO433 LEU434 LEU435 MET436 MET437 PRO438 LEU439 TYR440 ALA441 ASN442 GLY443 GLU444 GLU445 PHE446 ASN447 GLN448 GLY449 LYS450 TYR451 THR452 PHE453 TRP454 GLY455 GLY456 ASP457 THR458 LEU459 THR460 GLY461 LYS462 TRP463 GLU464 ASN465 ILE466 PRO467 ASP468 ASP469 LEU470 LYS471 PRO472 TYR473 THR474 VAL475 ILE476 GLN477 LEU478 HIS479 PRO480 ASP481 ASP482 LEU483 PRO484 LYS485 ARG486 ASP487 GLY488 ALA489 ALA490 ARG491 ASP492 PHE493 TYR494 GLU495 HIS496 MET497 LEU498 GLU499 GLU500 ALA501 ALA502 LYS503 TYR504 VAL505 ASN506 PRO507 LYS508 THR509 GLY510 LYS511 ASN512 GLU513 PRO514 ILE515 PRO516 VAL517 ILE518 LEU519 THR520 VAL521 TYR522 THR523 ALA524 GLY525 ASN526 MET527 PRO528 TYR529 TYR530 THR531 SER532 ALA533 HIS534 TRP535 LEU536 SER537 THR538 SER539 TRP540 ILE541 ASP542 LYS543 MET544 TYR545 GLN546 LYS547 TYR548 PRO549 ASN550 LEU551 HIS552 GLY553 ILE554 PHE555 SER556 THR557 GLU558 ASN559 TYR560 TRP561 ILE562 TRP563 ALA564 ASN565 ASP566 ILE567 GLU568 ASN569 LYS570 ALA571 ALA572 ASP573 TYR574 LEU575 LYS576 VAL577 SER578 ALA579 LYS580 ASN581 GLY582 GLY583 TYR584 PHE585 ILE586 TRP587 ALA588 GLU589 GLN590 ASN591 ASN592 GLY593 SER594 ALA595 ILE596 GLU597 LYS598 ALA599 PHE600 GLY601 LYS602 ASN603 GLY604 LYS605 ILE606 ALA607 PHE608 GLN609 LYS610 SER611 VAL612 ASP613 LYS614 TYR615 TRP616 LYS617 ASN618 LEU619 ILE620 PHE621 MET622 PHE623 LYS624 ASN625 THR626 PRO627 ALA628 ALA629 GLU630 GLY631 ASN632 ASP633 SER634 THR635 THR636 GLU637 SER638 TYR639 MET640 LYS641 GLY642 LEU643 TRP644 LEU645 SER646 ASN647 HIS648 THR649 TYR650 GLN651 TRP652 GLY653 GLY654 LEU655 MET656 ASP657 THR658 TRP659 LYS660 TRP661 TYR662 GLU663 THR664 GLY665 LYS666 TRP667 LYS668 LEU669 PHE670 ALA671 SER672 GLY673 ASN674 ILE675 GLY676 LYS677 SER678 GLN679 GLY680 ASP681 ARG682 GLN683 TRP684 LEU685 THR686 GLU687 PRO688 GLU689 SER690 MET691 LEU692 GLY693 GLU694 GLU695 ALA696 LEU697 GLY698 VAL699 TYR700 LEU701 ASN702 GLY703 GLY704 VAL705 VAL706 TYR707 ASN708 PHE709 GLU710 HIS711 PRO712 ALA713 TYR714 THR715 TYR716 GLY717 VAL718 ASN719 ASN720 LYS721 GLU722 SER723 LEU724 LEU725 PHE726 SER727 GLU728 VAL729 ILE730 LYS731 GLU732 PHE733 PHE734 ARG735 TYR736 VAL737 ILE738 ALA739 HIS740 PRO741 ALA742 PRO743 SER744 LYS745 GLU746 LYS747 VAL748 LEU749 GLU750 ASP751 THR752 LYS753 VAL754 PHE755 ILE756 HIS757 GLY758 ASP759 TYR760 SER761 ASN762 LYS763 GLY764 ASN765 GLY766 LYS767 PHE768 PHE769 VAL770 ASN771 VAL772 ASN773 THR774 ASP775 ARG776 GLU777 GLN778 THR779 PRO780 LEU781 TYR782 MET783 THR784 GLY785 ARG786 TYR787 ASN788 VAL789 ILE790 PRO791 ALA792 ILE793 PRO794 GLY795 VAL796 LEU797 LYS798 THR799 ILE813 GLN814 ILE815 LYS816 GLU817 ILE818 THR819 SER820 PRO821 GLU822 PHE823 SER824 SER825 THR826 GLN827 ALA828 ARG829 LYS830 GLU831 TYR832 LEU833 ASN834 LYS835 LEU836 TYR837 PRO838 MET839 ASN840 TYR841 GLU842 GLY843 ASP844 ILE845 PHE846 ALA847 GLN848 LYS849 LEU850 ASP851 ASN852 ARG853 TRP854 PHE855 VAL856 TYR857 ASN858 TYR859 LYS860 VAL861 ASN862 GLU863 ASN864 VAL865 LYS866 GLN867 THR868 GLY869 LYS870 LEU871 LYS872 PHE873 ASN874 SER875 LEU876 GLU877 MET878 ASN879 VAL880 GLU881 PHE882 GLU883 PRO884 HIS885 THR886 TYR887 GLY888 ILE889 PHE890 GLU891 ARG892 ILE893 SER894 ASN895 GLY896 LEU897 LYS898 VAL899 ASN900 LEU901 ASN902 ASN903 PHE904 ARG905 THR906 ASN907 LYS908 ASP909 SER910 LEU911 TRP912 SER913 ASN914 ALA915 GLN916 ASP917 ALA918 ASN919 GLN920 ALA921 LYS922 LYS923 LEU924 PRO925 GLN926 LEU927 THR928 LYS929 LYS930 GLY931 ALA932 ILE933 LYS934 TRP935 ILE936 GLU937 GLU938 HIS939 TYR940 ILE941 LYS942 ASP943 THR944 GLN945 PHE946 GLY947 GLU948 LYS949 ARG950 VAL951 THR952 LYS953 ILE954 VAL955 LEU956 ARG957 GLY958 ILE959 ASP960 LYS961 LEU962 PRO963 THR964 ILE965 HIS966 SER967 LEU968 SER969 GLY970 THR971 ASN972 ASN973 SER974 TYR975 ASP976 GLN977 PRO978 SER979 LEU980 ASN981 PHE982 ASP983 GLN984 LYS985 ASN986 HIS987 MET988 VAL989 THR990 ILE991 THR992 ILE993 ASN994 SER995 ASN996 GLY997 ASN998 LEU999 GLU1000 PHE1001 GLU1002 LEU1003 HIS1004 PHE1005
Ligands
Unit 3 GAL1 FUC2 GLA3
Unit 4 GAL1 FUC2 GLA3
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany