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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN NONSENSE MEDIATED DECAY FACTORS UPF1 AND UPF2
Keywords HYDROLASE, ZINC-FINGER, ATP-BINDING, RNA-BINDING, NONSENSE-M MRNA DECAY, NUCLEOTIDE-BINDING, METAL-BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2WJV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   REGULATOR OF NONSENSE TRANSCRIPTS 1  A 772 6094 0
2  Protein   REGULATOR OF NONSENSE TRANSCRIPTS 1  B 768 6073 0
3  Protein   REGULATOR OF NONSENSE TRANSCRIPTS 2  D 54 426 0
4  Protein   REGULATOR OF NONSENSE TRANSCRIPTS 2  E 60 473 0
5  Ligand   REGULATOR OF NONSENSE TRANSCRIPTS 1  A 16 0 68
6  Ligand   REGULATOR OF NONSENSE TRANSCRIPTS 1  B 13 0 53
total       1683 13066 121
Proteins
Unit 1 LYS116 ASP117 LEU118 PRO119 ILE120 HIS121 ALA122 CYS123 SER124 TYR125 CYS126 GLY127 ILE128 HIS129 ASP130 PRO131 ALA132 CYS133 VAL134 VAL135 TYR136 CYS137 ASN138 THR139 SER140 LYS141 LYS142 TRP143 PHE144 CYS145 ASN146 GLY147 ARG148 GLY149 ASN150 THR151 SER152 GLY153 SER154 HIS155 ILE156 VAL157 ASN158 HIS159 LEU160 VAL161 ARG162 ALA163 LYS164 CYS165 LYS166 GLU167 VAL168 THR169 LEU170 HIS171 LYS172 ASP173 GLY174 PRO175 LEU176 GLY177 GLU178 THR179 VAL180 LEU181 GLU182 CYS183 TYR184 ASN185 CYS186 GLY187 CYS188 ARG189 ASN190 VAL191 PHE192 LEU193 LEU194 GLY195 PHE196 ILE197 PRO198 ALA199 LYS200 ALA201 ASP202 SER203 VAL204 VAL205 VAL206 LEU207 LEU208 CYS209 ARG210 GLN211 PRO212 CYS213 ALA214 SER215 GLN216 SER217 SER218 LEU219 LYS220 TRP224 ASP225 SER226 SER227 GLN228 TRP229 GLN230 PRO231 LEU232 ILE233 GLN234 ASP235 ARG236 CYS237 PHE238 LEU239 SER240 TRP241 LEU242 VAL243 LYS244 ILE245 PRO246 SER247 GLU248 GLN249 GLU250 GLN251 LEU252 ARG253 ALA254 ARG255 GLN256 ILE257 THR258 ALA259 GLN260 GLN261 ILE262 ASN263 LYS264 LEU265 GLU266 GLU267 LEU268 TRP269 LYS270 GLU271 ASN272 PRO273 SER274 ALA275 THR276 LEU277 GLU278 ASP279 LEU280 ASP286 GLU287 GLU288 PRO289 GLN290 HIS291 VAL292 LEU293 LEU294 ARG295 TYR296 GLU297 ASP298 ALA299 TYR300 GLN301 TYR302 GLN303 ASN304 ILE305 PHE306 GLY307 PRO308 LEU309 VAL310 LYS311 LEU312 GLU313 ALA314 ASP315 TYR316 ASP317 LYS318 LYS319 LEU320 LYS321 GLU322 SER323 GLN324 THR325 GLN326 ASP327 ASN328 ILE329 THR330 VAL331 ARG332 TRP333 ASP334 LEU335 GLY336 LEU337 ASN338 LYS339 LYS340 ARG341 ILE342 ALA343 TYR344 PHE345 THR346 LEU347 PRO348 LEU356 MET357 GLN358 GLY359 ASP360 GLU361 ILE362 CYS363 LEU364 ARG365 TYR366 LYS367 GLY368 ASP369 LEU370 ALA371 PRO372 LEU373 TRP374 LYS375 GLY376 ILE377 GLY378 HIS379 VAL380 ILE381 LYS382 VAL383 PRO384 ASP389 GLU390 ILE391 ALA392 ILE393 GLU394 GLY400 ALA401 PRO402 VAL403 GLU404 VAL405 THR406 HIS407 ASN408 PHE409 GLN410 VAL411 ASP412 PHE413 VAL414 TRP415 LYS416 SER417 THR418 SER419 PHE420 ASP421 ARG422 MET423 GLN424 SER425 ALA426 LEU427 LYS428 THR429 PHE430 ALA431 VAL432 ASP433 GLU434 THR435 SER436 VAL437 SER438 GLY439 TYR440 ILE441 TYR442 HIS443 LYS444 LEU445 LEU446 GLY447 HIS448 GLU449 VAL450 GLU451 ASP452 VAL453 ILE454 ILE455 LYS456 CYS457 GLN458 LEU459 PRO460 LYS461 ARG462 PHE463 THR464 ALA465 GLN466 GLY467 LEU468 PRO469 ASP470 LEU471 ASN472 HIS473 SER474 GLN475 VAL476 TYR477 ALA478 VAL479 LYS480 THR481 VAL482 LEU483 GLN484 ARG485 PRO486 LEU487 SER488 LEU489 ILE490 GLN491 GLY492 PRO493 PRO494 GLY495 THR496 GLY497 LYS498 THR499 VAL500 THR501 SER502 ALA503 THR504 ILE505 VAL506 TYR507 HIS508 LEU509 ALA510 ARG511 GLN512 GLY513 ASN514 GLY515 PRO516 VAL517 LEU518 VAL519 CYS520 ALA521 PRO522 SER523 ASN524 ILE525 ALA526 VAL527 ASP528 GLN529 LEU530 THR531 GLU532 LYS533 ILE534 HIS535 GLN536 THR537 GLY538 LEU539 LYS540 VAL541 VAL542 ARG543 LEU544 CYS545 ALA546 LYS547 SER548 ARG549 GLU550 ALA551 ILE552 ASP553 SER554 PRO555 VAL556 SER557 PHE558 LEU559 ALA560 LEU561 HIS562 ASN563 GLN564 ILE565 ARG566 ASN567 MET568 ASP569 SER570 MET571 PRO572 GLU573 LEU574 GLN575 LYS576 LEU577 GLN578 GLN579 LEU580 LYS581 ASP582 GLU583 THR584 GLY585 GLU586 LEU587 SER588 SER589 ALA590 ASP591 GLU592 LYS593 ARG594 TYR595 ARG596 ALA597 LEU598 LYS599 ARG600 THR601 ALA602 GLU603 ARG604 GLU605 LEU606 LEU607 MET608 ASN609 ALA610 ASP611 VAL612 ILE613 CYS614 CYS615 THR616 CYS617 VAL618 GLY619 ALA620 GLY621 ASP622 PRO623 ARG624 LEU625 ALA626 LYS627 MET628 GLN629 PHE630 ARG631 SER632 ILE633 LEU634 ILE635 ASP636 GLU637 SER638 THR639 GLN640 ALA641 THR642 GLU643 PRO644 GLU645 CYS646 MET647 VAL648 PRO649 VAL650 VAL651 LEU652 GLY653 ALA654 LYS655 GLN656 LEU657 ILE658 LEU659 VAL660 GLY661 ASP662 HIS663 CYS664 GLN665 LEU666 GLY667 PRO668 VAL669 VAL670 MET671 CYS672 LYS673 LYS674 ALA675 ALA676 LYS677 ALA678 GLY679 LEU680 SER681 GLN682 SER683 LEU684 PHE685 GLU686 ARG687 LEU688 VAL689 VAL690 LEU691 GLY692 ILE693 ARG694 PRO695 ILE696 ARG697 LEU698 GLN699 VAL700 GLN701 TYR702 ARG703 MET704 HIS705 PRO706 ALA707 LEU708 SER709 ALA710 PHE711 PRO712 SER713 ASN714 ILE715 PHE716 TYR717 GLU718 GLY719 SER720 LEU721 GLN722 ASN723 GLY724 VAL725 THR726 ALA727 ALA728 ASP729 ARG730 VAL731 LYS732 LYS733 GLY734 PHE735 ASP736 PHE737 GLN738 TRP739 PRO740 GLN741 PRO742 ASP743 LYS744 PRO745 MET746 PHE747 PHE748 TYR749 VAL750 THR751 GLN752 GLY753 GLN754 GLU755 GLU756 ILE757 ALA758 SER759 SER760 GLY761 THR762 SER763 TYR764 LEU765 ASN766 ARG767 THR768 GLU769 ALA770 ALA771 ASN772 VAL773 GLU774 LYS775 ILE776 THR777 THR778 LYS779 LEU780 LEU781 LYS782 ALA783 GLY784 ALA785 LYS786 PRO787 ASP788 GLN789 ILE790 GLY791 ILE792 ILE793 THR794 PRO795 TYR796 GLU797 GLY798 GLN799 ARG800 SER801 TYR802 LEU803 VAL804 GLN805 TYR806 MET807 GLN808 PHE809 SER810 GLY811 SER812 LEU813 HIS814 THR815 LYS816 LEU817 TYR818 GLN819 GLU820 VAL821 GLU822 ILE823 ALA824 SER825 VAL826 ASP827 ALA828 PHE829 GLN830 GLY831 ARG832 GLU833 LYS834 ASP835 PHE836 ILE837 ILE838 LEU839 SER840 CYS841 VAL842 ARG843 ALA844 ASN845 GLU846 HIS847 GLN848 GLY849 ILE850 GLY851 PHE852 LEU853 ASN854 ASP855 PRO856 ARG857 ARG858 LEU859 ASN860 VAL861 ALA862 LEU863 THR864 ARG865 ALA866 ARG867 TYR868 GLY869 VAL870 ILE871 ILE872 VAL873 GLY874 ASN875 PRO876 LYS877 ALA878 LEU879 SER880 LYS881 GLN882 PRO883 LEU884 TRP885 ASN886 HIS887 LEU888 LEU889 ASN890 TYR891 TYR892 LYS893 GLU894 GLN895 LYS896 VAL897 LEU898 VAL899 GLU900 GLY901 PRO902 LEU903 ASN904 ASN905 LEU906 ARG907 GLU908 SER909 LEU910 MET911
Unit 2 LYS116 ASP117 LEU118 PRO119 ILE120 HIS121 ALA122 CYS123 SER124 TYR125 CYS126 GLY127 ILE128 HIS129 ASP130 PRO131 ALA132 CYS133 VAL134 VAL135 TYR136 CYS137 ASN138 THR139 SER140 LYS141 LYS142 TRP143 PHE144 CYS145 ASN146 GLY147 ARG148 GLY149 ASN150 THR151 SER152 GLY153 SER154 HIS155 ILE156 VAL157 ASN158 HIS159 LEU160 VAL161 ARG162 ALA163 LYS164 CYS165 LYS166 GLU167 VAL168 THR169 LEU170 HIS171 LYS172 ASP173 GLY174 PRO175 LEU176 GLY177 GLU178 THR179 VAL180 LEU181 GLU182 CYS183 TYR184 ASN185 CYS186 GLY187 CYS188 ARG189 ASN190 VAL191 PHE192 LEU193 LEU194 GLY195 PHE196 ILE197 PRO198 ALA199 LYS200 ALA201 ASP202 SER203 VAL204 VAL205 VAL206 LEU207 LEU208 CYS209 ARG210 GLN211 PRO212 CYS213 ALA214 SER215 GLN216 SER217 SER218 LEU219 LYS220 TRP224 ASP225 SER226 SER227 GLN228 TRP229 GLN230 PRO231 LEU232 ILE233 GLN234 ASP235 ARG236 CYS237 PHE238 LEU239 SER240 TRP241 LEU242 VAL243 LYS244 ILE245 PRO246 SER247 GLU248 GLN249 GLU250 GLN251 LEU252 ARG253 ALA254 ARG255 GLN256 ILE257 THR258 ALA259 GLN260 GLN261 ILE262 ASN263 LYS264 LEU265 GLU266 GLU267 LEU268 TRP269 LYS270 GLU271 ASN272 PRO273 SER274 ALA275 THR276 LEU277 GLU278 ASP279 LEU280 GLU288 PRO289 GLN290 HIS291 VAL292 LEU293 LEU294 ARG295 TYR296 GLU297 ASP298 ALA299 TYR300 GLN301 TYR302 GLN303 ASN304 ILE305 PHE306 GLY307 PRO308 LEU309 VAL310 LYS311 LEU312 GLU313 ALA314 ASP315 TYR316 ASP317 LYS318 LYS319 LEU320 LYS321 GLU322 SER323 GLN324 THR325 GLN326 ASP327 ASN328 ILE329 THR330 VAL331 ARG332 TRP333 LYS340 ARG341 ILE342 ALA343 TYR344 PHE345 THR346 LEU347 PRO348 LEU356 MET357 GLN358 GLY359 ASP360 GLU361 ILE362 CYS363 LEU364 ARG365 TYR366 LYS367 GLY368 ASP369 LEU370 ALA371 PRO372 LEU373 TRP374 LYS375 GLY376 ILE377 GLY378 HIS379 VAL380 ILE381 LYS382 VAL383 PRO384 ASP389 GLU390 ILE391 ALA392 ILE393 GLU394 LEU395 ARG396 SER397 SER398 VAL399 GLY400 ALA401 PRO402 VAL403 GLU404 VAL405 THR406 HIS407 ASN408 PHE409 GLN410 VAL411 ASP412 PHE413 VAL414 TRP415 LYS416 SER417 THR418 SER419 PHE420 ASP421 ARG422 MET423 GLN424 SER425 ALA426 LEU427 LYS428 THR429 PHE430 ALA431 VAL432 ASP433 GLU434 THR435 SER436 VAL437 SER438 GLY439 TYR440 ILE441 TYR442 HIS443 LYS444 LEU445 LEU446 GLY447 HIS448 GLU449 VAL450 GLU451 ASP452 VAL453 ILE454 ILE455 LYS456 CYS457 GLN458 LEU459 PRO460 LYS461 ARG462 PHE463 THR464 ALA465 GLN466 GLY467 LEU468 PRO469 ASP470 LEU471 ASN472 HIS473 SER474 GLN475 VAL476 TYR477 ALA478 VAL479 LYS480 THR481 VAL482 LEU483 GLN484 ARG485 PRO486 LEU487 SER488 LEU489 ILE490 GLN491 GLY492 PRO493 PRO494 GLY495 THR496 GLY497 LYS498 THR499 VAL500 THR501 SER502 ALA503 THR504 ILE505 VAL506 TYR507 HIS508 LEU509 ALA510 ARG511 GLN512 GLY513 ASN514 GLY515 PRO516 VAL517 LEU518 VAL519 CYS520 ALA521 PRO522 SER523 ASN524 ILE525 ALA526 VAL527 ASP528 GLN529 LEU530 THR531 GLU532 LYS533 ILE534 HIS535 GLN536 THR537 GLY538 LEU539 LYS540 VAL541 VAL542 ARG543 LEU544 CYS545 ALA546 LYS547 SER548 ARG549 GLU550 ALA551 ILE552 ASP553 SER554 PRO555 VAL556 SER557 PHE558 LEU559 ALA560 LEU561 HIS562 ASN563 GLN564 ILE565 ARG566 ASN567 MET568 ASP569 SER570 MET571 PRO572 GLU573 LEU574 GLN575 LYS576 LEU577 GLN578 GLN579 LEU580 LYS581 ASP582 GLU583 THR584 GLY585 GLU586 LEU587 SER588 SER589 ALA590 ASP591 GLU592 LYS593 ARG594 TYR595 ARG596 ALA597 LEU598 LYS599 ARG600 THR601 ALA602 GLU603 ARG604 GLU605 LEU606 LEU607 MET608 ASN609 ALA610 ASP611 VAL612 ILE613 CYS614 CYS615 THR616 CYS617 VAL618 GLY619 ALA620 GLY621 ASP622 PRO623 ARG624 LEU625 ALA626 LYS627 MET628 GLN629 PHE630 ARG631 SER632 ILE633 LEU634 ILE635 ASP636 GLU637 SER638 THR639 GLN640 ALA641 THR642 GLU643 PRO644 GLU645 CYS646 MET647 VAL648 PRO649 VAL650 VAL651 LEU652 GLY653 ALA654 LYS655 GLN656 LEU657 ILE658 LEU659 VAL660 GLY661 ASP662 HIS663 CYS664 GLN665 LEU666 GLY667 PRO668 VAL669 VAL670 MET671 CYS672 LYS673 LYS674 ALA675 ALA676 LYS677 ALA678 GLY679 LEU680 SER681 GLN682 SER683 LEU684 PHE685 GLU686 ARG687 LEU688 VAL689 VAL690 LEU691 GLY692 ILE693 ARG694 PRO695 ILE696 ARG697 LEU698 GLN699 VAL700 GLN701 TYR702 ARG703 MET704 HIS705 PRO706 ALA707 LEU708 SER709 ALA710 PHE711 PRO712 SER713 ASN714 ILE715 PHE716 TYR717 GLU718 GLY719 SER720 LEU721 GLN722 ASN723 GLY724 VAL725 THR726 ALA727 ALA728 ASP729 ARG730 VAL731 LYS732 LYS733 GLY734 PHE735 ASP736 PHE737 GLN738 TRP739 PRO740 GLN741 PRO742 ASP743 LYS744 PRO745 MET746 PHE747 PHE748 TYR749 VAL750 THR751 GLN752 GLY753 GLN754 GLU755 GLU756 ILE757 GLY761 THR762 SER763 TYR764 LEU765 ASN766 ARG767 THR768 GLU769 ALA770 ALA771 ASN772 VAL773 GLU774 LYS775 ILE776 THR777 THR778 LYS779 LEU780 LEU781 LYS782 ALA783 GLY784 ALA785 LYS786 PRO787 ASP788 GLN789 ILE790 GLY791 ILE792 ILE793 THR794 PRO795 TYR796 GLU797 GLY798 GLN799 ARG800 SER801 TYR802 LEU803 VAL804 GLN805 TYR806 MET807 GLN808 PHE809 SER810 GLY811 SER812 LEU813 HIS814 THR815 LYS816 LEU817 TYR818 GLN819 GLU820 VAL821 GLU822 ILE823 ALA824 SER825 VAL826 ASP827 ALA828 PHE829 GLN830 GLY831 ARG832 GLU833 LYS834 ASP835 PHE836 ILE837 ILE838 LEU839 SER840 CYS841 VAL842 ARG843 ALA844 ASN845 GLU846 HIS847 GLN848 GLY849 ILE850 GLY851 PHE852 LEU853 ASN854 ASP855 PRO856 ARG857 ARG858 LEU859 ASN860 VAL861 ALA862 LEU863 THR864 ARG865 ALA866 ARG867 TYR868 GLY869 VAL870 ILE871 ILE872 VAL873 GLY874 ASN875 PRO876 LYS877 ALA878 LEU879 SER880 LYS881 GLN882 PRO883 LEU884 TRP885 ASN886 HIS887 LEU888 LEU889 ASN890 TYR891 TYR892 LYS893 GLU894 GLN895 LYS896 VAL897 LEU898 VAL899 GLU900 GLY901 PRO902 LEU903 ASN904 ASN905 LEU906 ARG907 GLU908 SER909 LEU910 MET911 GLN912 PHE913
Unit 3 ALA1102 MET1103 GLY1104 VAL1105 PRO1106 CYS1107 VAL1108 GLU1109 ASP1110 GLU1111 ASP1112 PHE1113 ILE1114 GLN1115 ALA1116 LEU1117 ASP1118 LYS1119 MET1120 MET1121 LEU1122 GLU1123 ASN1124 LEU1125 GLN1126 GLN1127 ARG1128 ASP1167 THR1168 MET1169 PRO1170 PHE1171 VAL1172 MET1173 LEU1174 THR1175 GLN1181 GLN1182 PHE1183 LYS1184 ILE1185 LEU1186 ASN1187 VAL1188 PRO1189 MET1190 SER1191 SER1192 GLN1193 LEU1194 ALA1195 ALA1196 ASN1197 HIS1198
Unit 4 ALA1102 MET1103 GLY1104 VAL1105 PRO1106 CYS1107 VAL1108 GLU1109 ASP1110 GLU1111 ASP1112 PHE1113 ILE1114 GLN1115 ALA1116 LEU1117 ASP1118 LYS1119 MET1120 MET1121 LEU1122 GLU1123 ASN1124 LEU1125 GLN1126 GLN1127 ARG1128 SER1129 ASP1167 THR1168 MET1169 PRO1170 PHE1171 VAL1172 MET1173 LEU1174 THR1175 ARG1176 LYS1177 GLY1178 ASN1179 LYS1180 GLN1181 GLN1182 PHE1183 LYS1184 ILE1185 LEU1186 ASN1187 VAL1188 PRO1189 MET1190 SER1191 SER1192 GLN1193 LEU1194 ALA1195 ALA1196 ASN1197 HIS1198
Ligands
Unit 5 ZN1 ZN2 ZN3 SO4987 SO4988 SO4989 SO4990 SO4991 SO4992 SO4993 SO4994 SO4995 SO4996 SO4997 SO4998 SO4999
Unit 6 ZN1 ZN2 ZN3 SO4989 SO4990 SO4991 SO4992 SO4993 SO4995 SO4996 SO4997 SO4998 SO4999
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany