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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A CATALYTICALLY ACTIVE, NON-TOXIC ENDOPEPTIDASE DERIVATIVE OF CLOSTRIDIUM BOTULINUM TOXIN A
Keywords METALLOPROTEASE, MEMBRANE DOMAIN, PROTEIN ENGINEERING, NEURO METAL-BINDING, TRANSMEMBRANE, PHARMACEUTICAL, HYDROLASE, ZI PROTEASE, MIXED ALPHA AND BETA, BONT,MEMBRANE, SECRETED, PR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2W2D     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BOTULINUM NEUROTOXIN A LIGHT CHAIN  A 437 3534 0
2  Protein   BOTULINUM NEUROTOXIN A HEAVY CHAIN  B 424 3429 0
3  Protein   BOTULINUM NEUROTOXIN A LIGHT CHAIN  C 436 3522 0
4  Protein   BOTULINUM NEUROTOXIN A HEAVY CHAIN  D 408 3308 0
5  Ligand   BOTULINUM NEUROTOXIN A LIGHT CHAIN  A 7 0 26
6  Ligand   BOTULINUM NEUROTOXIN A HEAVY CHAIN  B 3 0 17
7  Ligand   BOTULINUM NEUROTOXIN A LIGHT CHAIN  C 4 0 15
8  Ligand   BOTULINUM NEUROTOXIN A HEAVY CHAIN  D 1 0 1
9 Water     308 0 308
total       2028 13793 367
Proteins
Unit 1 GLU-3 PHE-2 GLY-1 SER0 MET1 GLU2 PHE3 VAL4 ASN5 LYS6 GLN7 PHE8 ASN9 TYR10 LYS11 ASP12 PRO13 VAL14 ASN15 GLY16 VAL17 ASP18 ILE19 ALA20 TYR21 ILE22 LYS23 ILE24 PRO25 ASN26 ALA27 GLY28 GLN29 MET30 GLN31 PRO32 VAL33 LYS34 ALA35 PHE36 LYS37 ILE38 HIS39 ASN40 LYS41 ILE42 TRP43 VAL44 ILE45 PRO46 GLU47 ARG48 ASP49 THR50 PHE51 THR52 ASN53 PRO54 GLU55 GLU56 GLY57 ASP58 LEU59 ASN60 PRO61 PRO62 PRO63 GLU64 ALA65 LYS66 GLN67 VAL68 PRO69 VAL70 SER71 TYR72 TYR73 ASP74 SER75 THR76 TYR77 LEU78 SER79 THR80 ASP81 ASN82 GLU83 LYS84 ASP85 ASN86 TYR87 LEU88 LYS89 GLY90 VAL91 THR92 LYS93 LEU94 PHE95 GLU96 ARG97 ILE98 TYR99 SER100 THR101 ASP102 LEU103 GLY104 ARG105 MET106 LEU107 LEU108 THR109 SER110 ILE111 VAL112 ARG113 GLY114 ILE115 PRO116 PHE117 TRP118 GLY119 GLY120 SER121 THR122 ILE123 ASP124 THR125 GLU126 LEU127 LYS128 VAL129 ILE130 ASP131 THR132 ASN133 CYS134 ILE135 ASN136 VAL137 ILE138 GLN139 PRO140 ASP141 GLY142 SER143 TYR144 ARG145 SER146 GLU147 GLU148 LEU149 ASN150 LEU151 VAL152 ILE153 ILE154 GLY155 PRO156 SER157 ALA158 ASP159 ILE160 ILE161 GLN162 PHE163 GLU164 CYS165 LYS166 SER167 PHE168 GLY169 HIS170 GLU171 VAL172 LEU173 ASN174 LEU175 THR176 ARG177 ASN178 GLY179 TYR180 GLY181 SER182 THR183 GLN184 TYR185 ILE186 ARG187 PHE188 SER189 PRO190 ASP191 PHE192 THR193 PHE194 GLY195 PHE196 GLU197 GLU198 SER199 LEU200 GLU201 VAL202 ASP203 THR204 ASN205 PRO206 LEU207 LEU208 GLY209 ALA210 GLY211 LYS212 PHE213 ALA214 THR215 ASP216 PRO217 ALA218 VAL219 THR220 LEU221 ALA222 HIS223 GLU224 LEU225 ILE226 HIS227 ALA228 GLY229 HIS230 ARG231 LEU232 TYR233 GLY234 ILE235 ALA236 ILE237 ASN238 PRO239 ASN240 ARG241 VAL242 PHE243 LYS244 VAL245 ASN246 THR247 ASN248 ALA249 TYR250 TYR251 GLU252 MET253 SER254 GLY255 LEU256 GLU257 VAL258 SER259 PHE260 GLU261 GLU262 LEU263 ARG264 THR265 PHE266 GLY267 GLY268 HIS269 ASP270 ALA271 LYS272 PHE273 ILE274 ASP275 SER276 LEU277 GLN278 GLU279 ASN280 GLU281 PHE282 ARG283 LEU284 TYR285 TYR286 TYR287 ASN288 LYS289 PHE290 LYS291 ASP292 ILE293 ALA294 SER295 THR296 LEU297 ASN298 LYS299 ALA300 LYS301 SER302 ILE303 VAL304 GLY305 THR306 THR307 ALA308 SER309 LEU310 GLN311 TYR312 MET313 LYS314 ASN315 VAL316 PHE317 LYS318 GLU319 LYS320 TYR321 LEU322 LEU323 SER324 GLU325 ASP326 THR327 SER328 GLY329 LYS330 PHE331 SER332 VAL333 ASP334 LYS335 LEU336 LYS337 PHE338 ASP339 LYS340 LEU341 TYR342 LYS343 MET344 LEU345 THR346 GLU347 ILE348 TYR349 THR350 GLU351 ASP352 ASN353 PHE354 VAL355 LYS356 PHE357 PHE358 LYS359 VAL360 LEU361 ASN362 ARG363 LYS364 THR365 TYR366 LEU367 ASN368 PHE369 ASP370 LYS371 ALA372 VAL373 PHE374 LYS375 ILE376 ASN377 ILE378 VAL379 PRO380 LYS381 VAL382 ASN383 TYR384 THR385 ILE386 TYR387 ASP388 GLY389 PHE390 ASN391 LEU392 ARG393 ASN394 THR395 ASN396 LEU397 ALA398 ALA399 ASN400 PHE401 ASN402 GLY403 GLN404 ASN405 THR406 GLU407 ILE408 ASN409 ASN410 MET411 ASN412 PHE413 THR414 LYS415 LEU416 LYS417 ASN418 PHE419 THR420 GLY421 LEU422 PHE423 GLU424 PHE425 TYR426 LYS427 LEU428 LEU429 CYS430 VAL431 ASP432 GLY433
Unit 2 ALA449 LEU450 ASN451 LEU452 GLN453 CYS454 ILE455 LYS456 VAL457 ASN458 ASN459 TRP460 ASP461 LEU462 PHE463 PHE464 SER465 PRO466 SER467 GLU468 ASP469 ASN470 PHE471 THR472 ASN473 ASP474 LEU475 ASN476 LYS477 GLY478 GLU479 GLU480 ILE481 THR482 SER483 ASP484 THR485 ASN486 ILE487 GLU488 ALA489 ALA490 GLU491 GLU492 ASN493 ILE494 SER495 LEU496 ASP497 LEU498 ILE499 GLN500 GLN501 TYR502 TYR503 LEU504 THR505 PHE506 ASN507 PHE508 ASP509 ASN510 GLU511 PRO512 GLU513 ASN514 ILE515 SER516 ILE517 GLU518 ASN519 LEU520 SER521 SER522 ASP523 ILE524 ILE525 GLY526 GLN527 LEU528 GLU529 LEU530 MET531 PRO532 ASN533 ILE534 GLU535 ARG536 PHE537 PRO538 ASN539 GLY540 LYS541 LYS542 TYR543 GLU544 LEU545 ASP546 LYS547 TYR548 THR549 MET550 PHE551 HIS552 TYR553 LEU554 ARG555 ALA556 GLN557 GLU558 PHE559 GLU560 HIS561 GLY562 LYS563 SER564 ARG565 ILE566 ALA567 LEU568 THR569 ASN570 SER571 VAL572 ASN573 GLU574 ALA575 LEU576 LEU577 ASN578 PRO579 SER580 ARG581 VAL582 TYR583 THR584 PHE585 PHE586 SER587 SER588 ASP589 TYR590 VAL591 LYS592 LYS593 VAL594 ASN595 LYS596 ALA597 THR598 GLU599 ALA600 ALA601 MET602 PHE603 LEU604 GLY605 TRP606 VAL607 GLU608 GLN609 LEU610 VAL611 TYR612 ASP613 PHE614 THR615 ASP616 GLU617 THR618 SER619 GLU620 VAL621 SER622 THR623 THR624 ASP625 LYS626 ILE627 ALA628 ASP629 ILE630 THR631 ILE632 ILE633 ILE634 PRO635 TYR636 ILE637 GLY638 PRO639 ALA640 LEU641 ASN642 ILE643 GLY644 ASN645 MET646 LEU647 TYR648 LYS649 ASP650 ASP651 PHE652 VAL653 GLY654 ALA655 LEU656 ILE657 PHE658 SER659 GLY660 ALA661 VAL662 ILE663 LEU664 LEU665 GLU666 PHE667 ILE668 PRO669 GLU670 ILE671 ALA672 ILE673 PRO674 VAL675 LEU676 GLY677 THR678 PHE679 ALA680 LEU681 VAL682 SER683 TYR684 ILE685 ALA686 ASN687 LYS688 VAL689 LEU690 THR691 VAL692 GLN693 THR694 ILE695 ASP696 ASN697 ALA698 LEU699 SER700 LYS701 ARG702 ASN703 GLU704 LYS705 TRP706 ASP707 GLU708 VAL709 TYR710 LYS711 TYR712 ILE713 VAL714 THR715 ASN716 TRP717 LEU718 ALA719 LYS720 VAL721 ASN722 THR723 GLN724 ILE725 ASP726 LEU727 ILE728 ARG729 LYS730 LYS731 MET732 LYS733 GLU734 ALA735 LEU736 GLU737 ASN738 GLN739 ALA740 GLU741 ALA742 THR743 LYS744 ALA745 ILE746 ILE747 ASN748 TYR749 GLN750 TYR751 ASN752 GLN753 TYR754 THR755 GLU756 GLU757 GLU758 LYS759 ASN760 ASN761 ILE762 ASN763 PHE764 ASN765 ILE766 ASP767 ASP768 LEU769 SER770 SER771 LYS772 LEU773 ASN774 GLU775 SER776 ILE777 ASN778 LYS779 ALA780 MET781 ILE782 ASN783 ILE784 ASN785 LYS786 PHE787 LEU788 ASN789 GLN790 CYS791 SER792 VAL793 SER794 TYR795 LEU796 MET797 ASN798 SER799 MET800 ILE801 PRO802 TYR803 GLY804 VAL805 LYS806 ARG807 LEU808 GLU809 ASP810 PHE811 ASP812 ALA813 SER814 LEU815 LYS816 ASP817 ALA818 LEU819 LEU820 LYS821 TYR822 ILE823 TYR824 ASP825 ASN826 ARG827 GLY828 THR829 LEU830 ILE831 GLY832 GLN833 VAL834 ASP835 ARG836 LEU837 LYS838 ASP839 LYS840 VAL841 ASN842 ASN843 THR844 LEU845 SER846 THR847 ASP848 ILE849 PRO850 PHE851 GLN852 LEU853 SER854 LYS855 TYR856 VAL857 ASP858 ASN859 GLN860 ARG861 LEU862 LEU863 SER864 THR865 PHE866 THR867 GLU868 TYR869 ILE870 LYS871 ASN872
Unit 3 SER0 MET1 GLU2 PHE3 VAL4 ASN5 LYS6 GLN7 PHE8 ASN9 TYR10 LYS11 ASP12 PRO13 VAL14 ASN15 GLY16 VAL17 ASP18 ILE19 ALA20 TYR21 ILE22 LYS23 ILE24 PRO25 ASN26 ALA27 GLY28 GLN29 MET30 GLN31 PRO32 VAL33 LYS34 ALA35 PHE36 LYS37 ILE38 HIS39 ASN40 LYS41 ILE42 TRP43 VAL44 ILE45 PRO46 GLU47 ARG48 ASP49 THR50 PHE51 THR52 ASN53 PRO54 GLU55 GLU56 GLY57 ASP58 LEU59 ASN60 PRO61 PRO62 PRO63 GLU64 ALA65 LYS66 GLN67 VAL68 PRO69 VAL70 SER71 TYR72 TYR73 ASP74 SER75 THR76 TYR77 LEU78 SER79 THR80 ASP81 ASN82 GLU83 LYS84 ASP85 ASN86 TYR87 LEU88 LYS89 GLY90 VAL91 THR92 LYS93 LEU94 PHE95 GLU96 ARG97 ILE98 TYR99 SER100 THR101 ASP102 LEU103 GLY104 ARG105 MET106 LEU107 LEU108 THR109 SER110 ILE111 VAL112 ARG113 GLY114 ILE115 PRO116 PHE117 TRP118 GLY119 GLY120 SER121 THR122 ILE123 ASP124 THR125 GLU126 LEU127 LYS128 VAL129 ILE130 ASP131 THR132 ASN133 CYS134 ILE135 ASN136 VAL137 ILE138 GLN139 PRO140 ASP141 GLY142 SER143 TYR144 ARG145 SER146 GLU147 GLU148 LEU149 ASN150 LEU151 VAL152 ILE153 ILE154 GLY155 PRO156 SER157 ALA158 ASP159 ILE160 ILE161 GLN162 PHE163 GLU164 CYS165 LYS166 SER167 PHE168 GLY169 HIS170 GLU171 VAL172 LEU173 ASN174 LEU175 THR176 ARG177 ASN178 GLY179 TYR180 GLY181 SER182 THR183 GLN184 TYR185 ILE186 ARG187 PHE188 SER189 PRO190 ASP191 PHE192 THR193 PHE194 GLY195 PHE196 GLU197 GLU198 SER199 LEU200 GLU201 VAL202 ASP203 THR204 ASN205 PRO206 LEU207 LEU208 GLY209 ALA210 GLY211 LYS212 PHE213 ALA214 THR215 ASP216 PRO217 ALA218 VAL219 THR220 LEU221 ALA222 HIS223 GLU224 LEU225 ILE226 HIS227 ALA228 GLY229 HIS230 ARG231 LEU232 TYR233 GLY234 ILE235 ALA236 ILE237 ASN238 PRO239 ASN240 ARG241 VAL242 PHE243 LYS244 VAL245 ASN246 THR247 ASN248 ALA249 TYR250 TYR251 GLU252 MET253 SER254 GLY255 LEU256 GLU257 VAL258 SER259 PHE260 GLU261 GLU262 LEU263 ARG264 THR265 PHE266 GLY267 GLY268 HIS269 ASP270 ALA271 LYS272 PHE273 ILE274 ASP275 SER276 LEU277 GLN278 GLU279 ASN280 GLU281 PHE282 ARG283 LEU284 TYR285 TYR286 TYR287 ASN288 LYS289 PHE290 LYS291 ASP292 ILE293 ALA294 SER295 THR296 LEU297 ASN298 LYS299 ALA300 LYS301 SER302 ILE303 VAL304 GLY305 THR306 THR307 ALA308 SER309 LEU310 GLN311 TYR312 MET313 LYS314 ASN315 VAL316 PHE317 LYS318 GLU319 LYS320 TYR321 LEU322 LEU323 SER324 GLU325 ASP326 THR327 SER328 GLY329 LYS330 PHE331 SER332 VAL333 ASP334 LYS335 LEU336 LYS337 PHE338 ASP339 LYS340 LEU341 TYR342 LYS343 MET344 LEU345 THR346 GLU347 ILE348 TYR349 THR350 GLU351 ASP352 ASN353 PHE354 VAL355 LYS356 PHE357 PHE358 LYS359 VAL360 LEU361 ASN362 ARG363 LYS364 THR365 TYR366 LEU367 ASN368 PHE369 ASP370 LYS371 ALA372 VAL373 PHE374 LYS375 ILE376 ASN377 ILE378 VAL379 PRO380 LYS381 VAL382 ASN383 TYR384 THR385 ILE386 TYR387 ASP388 GLY389 PHE390 ASN391 LEU392 ARG393 ASN394 THR395 ASN396 LEU397 ALA398 ALA399 ASN400 PHE401 ASN402 GLY403 GLN404 ASN405 THR406 GLU407 ILE408 ASN409 ASN410 MET411 ASN412 PHE413 THR414 LYS415 LEU416 LYS417 ASN418 PHE419 THR420 GLY421 LEU422 PHE423 GLU424 PHE425 TYR426 LYS427 LEU428 LEU429 CYS430 VAL431 ASP432 GLY433 ILE434 ILE435
Unit 4 ALA449 LEU450 ASN451 LEU452 GLN453 CYS454 ILE455 LYS456 VAL457 ASN458 ASN459 TRP460 ASP461 LEU462 PHE463 PHE464 SER465 PRO466 SER467 GLU468 ASP469 ASN470 PHE471 THR472 ASN473 ASP474 LEU475 ASN476 LYS477 GLY478 GLU479 GLU480 ILE481 THR482 SER483 ASP484 THR485 ASN486 ILE487 GLU488 ALA489 ALA490 GLU491 GLU492 ASN493 ILE494 SER495 LEU496 ASP497 LEU498 ILE499 GLN500 GLN501 TYR502 TYR503 LEU504 THR505 PHE506 ASN507 PHE508 ASP509 ASN510 GLU511 PRO512 GLU513 ASN514 ILE515 SER516 ILE517 GLU518 ASN519 LEU520 SER521 SER522 ASP523 ILE524 ILE525 GLY526 GLN527 LEU528 GLU529 LEU530 MET531 PRO532 ASN533 ILE534 GLU535 ARG536 PHE537 PRO538 ASN539 GLY540 LYS541 LYS542 TYR543 GLU544 LEU545 ASP546 LYS547 TYR548 THR549 MET550 PHE551 HIS552 TYR553 LEU554 ARG555 ALA556 GLN557 GLU558 PHE559 GLU560 HIS561 ARG565 ILE566 ALA567 LEU568 THR569 ASN570 SER571 VAL572 ASN573 GLU574 ALA575 LEU576 PRO579 SER580 ARG581 VAL582 TYR583 THR584 PHE585 PHE586 SER587 SER588 ASP589 TYR590 VAL591 LYS592 LYS593 VAL594 GLU599 ALA600 ALA601 MET602 PHE603 LEU604 GLY605 TRP606 VAL607 GLU608 GLN609 LEU610 VAL611 TYR612 ASP613 PHE614 THR615 ASP616 GLU617 THR618 SER619 GLU620 VAL621 SER622 THR623 ASP629 ILE630 THR631 ILE632 ILE633 ILE634 PRO635 TYR636 ILE637 GLY638 PRO639 ALA640 LEU641 ASN642 ILE643 GLY644 ASN645 MET646 LEU647 LYS649 ASP650 ASP651 PHE652 VAL653 GLY654 ALA655 LEU656 ILE657 PHE658 SER659 GLY660 ALA661 VAL662 ILE663 LEU664 LEU665 GLU666 PHE667 ILE668 PRO669 GLU670 ILE671 ALA672 ILE673 PRO674 VAL675 LEU676 GLY677 THR678 PHE679 ALA680 LEU681 VAL682 SER683 TYR684 ILE685 ALA686 ASN687 LYS688 VAL689 LEU690 THR691 VAL692 GLN693 THR694 ILE695 ASP696 ASN697 ALA698 LEU699 SER700 LYS701 ARG702 ASN703 GLU704 LYS705 TRP706 ASP707 GLU708 VAL709 TYR710 LYS711 TYR712 ILE713 VAL714 THR715 ASN716 TRP717 LEU718 ALA719 LYS720 VAL721 ASN722 THR723 GLN724 ILE725 ASP726 LEU727 ILE728 ARG729 LYS730 LYS731 MET732 LYS733 GLU734 ALA735 LEU736 GLU737 ASN738 GLN739 ALA740 GLU741 ALA742 THR743 LYS744 ALA745 ILE746 ILE747 ASN748 TYR749 GLN750 TYR751 ASN752 GLN753 TYR754 THR755 GLU756 GLU757 GLU758 LYS759 ASN760 ASN761 PHE764 ASN765 ILE766 ASP767 ASP768 LEU769 SER770 SER771 LYS772 LEU773 ASN774 GLU775 SER776 ILE777 ASN778 LYS779 ALA780 MET781 ILE782 ASN783 ILE784 ASN785 LYS786 PHE787 LEU788 ASN789 GLN790 CYS791 SER792 VAL793 SER794 TYR795 LEU796 MET797 ASN798 SER799 MET800 ILE801 PRO802 TYR803 GLY804 VAL805 LYS806 ARG807 LEU808 GLU809 ASP810 PHE811 ASP812 ALA813 SER814 LEU815 LYS816 ASP817 ALA818 LEU819 LEU820 LYS821 TYR822 ILE823 TYR824 ASP825 ASN826 ARG827 GLY828 THR829 LEU830 ILE831 GLY832 GLN833 VAL834 ASP835 ARG836 LEU837 LYS838 ASP839 LYS840 VAL841 ASN842 ASN843 THR844 LEU845 SER846 THR847 ASP848 ILE849 PRO850 PHE851 GLN852 LEU853 SER854 LYS855 TYR856 VAL857 ASP858 ASN859 GLN860 ARG861 LEU862 LEU863 SER864 THR865 PHE866 THR867 GLU868 TYR869 ILE870 LYS871 ASN872 ILE873
Ligands
Unit 5 SO41433 ZN1434 CL1435 GOL1436 GOL1437 GOL1438 CL1439
Unit 6 SO41872 GOL1873 GOL1874
Unit 7 ACT1435 SO41436 SO41437 ZN1438
Unit 8 CL1872
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany