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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HSDR SUBUNIT OF THE ECOR124I RESTRI ENZYME IN COMPLEX WITH ATP
Keywords ATP-BINDING, DNA-BINDING, RESTRICTION SYSTEM, HELICASE, HYDR R.ECOR124I, NUCLEOTIDE-BINDING, TYPE I RESTRICTION-MODIFICA ENZYME
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2W00     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HSDR  A 842 6721 104
2  Protein   HSDR  B 852 6811 104
3  Ligand   HSDR  A 2 0 32
4  Ligand   HSDR  B 2 0 32
5 Water     582 0 582
total       2280 13532 854
Proteins
Unit 1 ASN13 PHE14 ILE15 VAL16 LEU17 ASP18 LYS19 TYR20 ILE21 LYS22 ALA23 GLU24 PRO25 THR26 GLY27 ASP28 SER29 TYR30 GLN31 SER32 GLU33 SER34 ASP35 LEU36 GLU37 ARG38 GLU39 LEU40 ILE41 GLN42 ASP43 LEU44 ARG45 ASN46 GLN47 GLY48 TYR49 GLU50 PHE51 ILE52 SER53 VAL54 LYS55 SER56 GLN57 SER58 ALA59 MSE60 LEU61 ALA62 ASN63 VAL64 ARG65 GLU66 GLN67 LEU68 GLN69 ASN70 LEU71 ASN72 GLY73 VAL74 VAL75 PHE76 ASN77 ASP78 SER79 GLU80 TRP81 ARG82 ARG83 PHE84 THR85 GLU86 GLN87 TYR88 LEU89 ASP90 ASN91 PRO92 SER93 ASP94 GLY95 ILE96 LEU97 ASP98 LYS99 THR100 ARG101 LYS102 ILE103 HIS104 ILE105 ASP106 TYR107 ILE108 CYS109 ASP110 PHE111 ILE112 PHE113 ASP114 ASP115 GLU116 ARG117 LEU118 GLU119 ASN120 ILE121 TYR122 LEU123 ILE124 ASP125 LYS126 LYS127 ASN128 LEU129 MSE130 ARG131 ASN132 LYS133 VAL134 GLN135 ILE136 ILE137 GLN138 GLN139 PHE140 GLU141 ASN148 ARG149 TYR150 ASP151 VAL152 THR153 ILE154 LEU155 VAL156 ASN157 GLY158 LEU159 PRO160 LEU161 VAL162 GLN163 ILE164 GLU165 LEU166 LYS167 LYS168 ARG169 GLY170 VAL171 ALA172 ILE173 ARG174 GLU175 ALA176 PHE177 ASN178 GLN179 ILE180 HIS181 SER190 GLU191 ASN192 SER193 LEU194 PHE195 LYS196 TYR197 LEU198 GLN199 LEU200 PHE201 VAL202 ILE203 SER204 ASN205 GLY206 THR207 ASP208 THR209 ARG210 TYR211 PHE212 ALA213 ASN214 THR215 THR216 LYS217 ARG218 ASP219 LYS220 ASN221 SER222 PHE223 ASP224 PHE225 THR226 MSE227 ASN228 TRP229 ALA230 LYS231 SER232 ASP233 ASN234 THR235 LEU236 ILE237 LYS238 ASP239 LEU240 LYS241 ASP242 PHE243 THR244 ALA245 THR246 CYS247 PHE248 GLN249 LYS250 HIS251 THR252 LEU253 LEU254 ASN255 VAL256 LEU257 VAL258 ASN259 TYR260 SER261 VAL262 PHE263 ASP264 SER265 SER266 GLN267 THR268 LEU269 LEU270 VAL271 MSE272 ARG273 PRO274 TYR275 GLN276 ILE277 ALA278 ALA279 THR280 GLU281 ARG282 ILE283 LEU284 TRP285 LYS286 ILE287 LYS288 SER289 SER290 PHE291 THR292 ALA293 LYS294 ASN295 TRP296 SER297 LYS298 PRO299 GLU300 SER301 GLY302 GLY303 TYR304 ILE305 TRP306 HIS307 THR308 THR309 GLY310 SER311 GLY312 LYS313 THR314 LEU315 THR316 SER317 PHE318 LYS319 ALA320 ALA321 ARG322 LEU323 ALA324 THR325 GLU326 LEU327 ASP328 PHE329 ILE330 ASP331 LYS332 VAL333 PHE334 PHE335 VAL336 VAL337 ASP338 ARG339 LYS340 ASP341 LEU342 ASP343 TYR344 GLN345 THR346 MSE347 LYS348 GLU349 TYR350 GLN351 ARG352 PHE353 SER354 PRO355 ASP356 SER357 VAL358 ASN359 GLY360 SER361 GLU362 ASN363 THR364 ALA365 GLY366 LEU367 LYS368 ARG369 ASN370 LEU371 ASP372 LYS373 ASP374 ASP375 ASN376 LYS377 ILE378 ILE379 VAL380 THR381 THR382 ILE383 GLN384 LYS385 LEU386 ASN387 ASN388 LEU389 MSE390 LYS391 ALA392 GLU393 SER394 ASP395 LEU396 PRO397 VAL398 TYR399 ASN400 GLN401 GLN402 VAL403 VAL404 PHE405 ILE406 PHE407 ASP408 GLU409 CYS410 HIS411 ARG412 SER413 GLN414 PHE415 GLY416 GLU417 ALA418 GLN419 LYS420 ASN421 LEU422 LYS423 LYS424 LYS425 PHE426 LYS427 ARG428 TYR429 TYR430 GLN431 PHE432 GLY433 PHE434 THR435 GLY436 THR437 PRO438 ILE439 PHE440 PRO441 GLU442 ASN443 ALA444 LEU445 GLY446 SER447 GLU448 THR449 THR450 ALA451 SER452 VAL453 PHE454 GLY455 ARG456 GLU457 LEU458 HIS459 SER460 TYR461 VAL462 ILE463 THR464 ASP465 ALA466 ILE467 ARG468 ASP469 GLU470 LYS471 VAL472 LEU473 LYS474 PHE475 LYS476 VAL477 ASP478 TYR479 ASN480 ASP481 VAL482 ARG483 PRO484 GLN485 PHE486 LYS487 SER488 LEU489 GLU490 THR491 GLU492 THR493 ASP494 GLU495 LYS496 LYS497 LEU498 SER499 ALA500 ALA501 GLU502 ASN503 GLN504 GLN505 ALA506 PHE507 LEU508 HIS509 PRO510 MSE511 ARG512 ILE513 GLN514 GLU515 ILE516 THR517 GLN518 TYR519 ILE520 LEU521 ASN522 ASN523 PHE524 ARG525 GLN526 LYS527 THR528 HIS529 ARG530 THR531 PHE532 PRO533 GLY534 SER535 LYS536 GLY537 PHE538 ASN539 ALA540 MSE541 LEU542 ALA543 VAL544 SER545 SER546 VAL547 ASP548 ALA549 ALA550 LYS551 ALA552 TYR553 TYR554 ALA555 THR556 PHE557 LYS558 ARG559 LEU560 GLN561 GLU562 GLU563 ALA564 ALA565 ASN566 LYS567 SER568 ALA569 THR570 TYR571 LYS572 PRO573 LEU574 ARG575 ILE576 ALA577 THR578 ILE579 PHE580 SER581 PHE582 ALA583 ALA584 ILE591 GLY592 GLU593 ILE594 SER595 ASP596 GLU597 THR598 PHE599 ASP600 THR601 SER602 ALA603 MSE604 ASP605 SER606 SER607 ALA608 LYS609 GLU610 PHE611 LEU612 ASP613 ALA614 ALA615 ILE616 ARG617 GLU618 TYR619 ASN620 SER621 HIS622 PHE623 LYS624 THR625 ASN626 PHE627 SER628 THR629 ASP630 SER631 ASN632 GLY633 PHE634 GLN635 ASN636 TYR637 TYR638 ARG639 ASP640 LEU641 ALA642 GLN643 ARG644 VAL645 LYS646 ASN647 GLN648 ASP649 ILE650 ASP651 LEU652 LEU653 ILE654 VAL655 VAL656 GLY657 MSE658 PHE659 LEU660 THR661 GLY662 PHE663 ASP664 ALA665 PRO666 THR667 LEU668 ASN669 THR670 LEU671 PHE672 VAL673 ASP674 LYS675 ASN676 LEU677 ARG678 TYR679 HIS680 GLY681 LEU682 MSE683 GLN684 ALA685 PHE686 SER687 ARG688 THR689 ASN690 ARG691 ILE692 TYR693 ASP694 ALA695 THR696 LYS697 THR698 PHE699 GLY700 ASN701 ILE702 VAL703 THR704 PHE705 ARG706 ASP707 LEU708 GLU709 ARG710 SER711 THR712 ILE713 ASP714 ALA715 ILE716 THR717 LEU718 PHE719 GLY720 ASP721 LYS722 ASN723 THR724 LYS725 ASN726 VAL727 VAL728 LEU729 GLU730 LYS731 SER732 TYR733 THR734 GLU735 TYR736 MSE737 GLU738 GLY739 PHE740 THR741 ASP742 ALA743 ALA744 THR745 GLY746 GLU747 ALA748 LYS749 ARG750 GLY751 PHE752 MSE753 THR754 VAL755 VAL756 SER757 GLU758 LEU759 GLU760 GLN761 ARG762 PHE763 PRO764 ASP765 PRO766 THR767 SER768 ILE769 GLU770 SER771 GLU772 LYS773 GLU774 LYS775 LYS776 ASP777 PHE778 VAL779 LYS780 LEU781 PHE782 GLY783 GLU784 TYR785 LEU786 ARG787 ALA788 GLU789 ASN790 ILE791 LEU792 GLN793 ASN794 TYR795 ASP796 GLU797 PHE798 ALA799 THR800 LEU801 LYS802 ALA803 LEU804 GLN805 GLN806 ILE807 ASP808 LEU809 SER810 ASP811 PRO812 VAL813 ALA814 VAL815 GLU816 LYS817 PHE818 LYS819 ALA820 GLU821 HIS822 TYR823 VAL824 ASP825 ASP826 GLU827 LYS828 PHE829 ALA830 GLU831 LEU832 GLN833 THR834 ILE835 ARG836 LEU837 PRO838 ALA839 ASP840 ARG841 LYS842 ILE843 GLN844 ASP845 TYR846 ARG847 SER848 ALA849 TYR850 ASN851 ASP852 ILE853 ARG854 ASP855 TRP856 GLN857 ARG858 THR870 THR871 ASP872 TRP873 ASP874 ASP875 VAL876 VAL877 PHE878 GLU879 VAL880 ASP881 LEU882 LEU883 LYS884 SER885
Unit 2 ASN13 PHE14 ILE15 VAL16 LEU17 ASP18 LYS19 TYR20 ILE21 LYS22 ALA23 GLU24 PRO25 THR26 GLY27 ASP28 SER29 TYR30 GLN31 SER32 GLU33 SER34 ASP35 LEU36 GLU37 ARG38 GLU39 LEU40 ILE41 GLN42 ASP43 LEU44 ARG45 ASN46 GLN47 GLY48 TYR49 GLU50 PHE51 ILE52 SER53 VAL54 LYS55 SER56 GLN57 SER58 ALA59 MSE60 LEU61 ALA62 ASN63 VAL64 ARG65 GLU66 GLN67 LEU68 GLN69 ASN70 LEU71 ASN72 GLY73 VAL74 VAL75 PHE76 ASN77 ASP78 SER79 GLU80 TRP81 ARG82 ARG83 PHE84 THR85 GLU86 GLN87 TYR88 LEU89 ASP90 ASN91 PRO92 SER93 ASP94 GLY95 ILE96 LEU97 ASP98 LYS99 THR100 ARG101 LYS102 ILE103 HIS104 ILE105 ASP106 TYR107 ILE108 CYS109 ASP110 PHE111 ILE112 PHE113 ASP114 ASP115 GLU116 ARG117 LEU118 GLU119 ASN120 ILE121 TYR122 LEU123 ILE124 ASP125 LYS126 LYS127 ASN128 LEU129 MSE130 ARG131 ASN132 LYS133 VAL134 GLN135 ILE136 ILE137 GLN138 GLN139 PHE140 GLU141 ASN148 ARG149 TYR150 ASP151 VAL152 THR153 ILE154 LEU155 VAL156 ASN157 GLY158 LEU159 PRO160 LEU161 VAL162 GLN163 ILE164 GLU165 LEU166 LYS167 LYS168 ARG169 GLY170 VAL171 ALA172 ILE173 ARG174 GLU175 ALA176 PHE177 ASN178 GLN179 ILE180 HIS181 GLU191 ASN192 SER193 LEU194 PHE195 LYS196 TYR197 LEU198 GLN199 LEU200 PHE201 VAL202 ILE203 SER204 ASN205 GLY206 THR207 ASP208 THR209 ARG210 TYR211 PHE212 ALA213 ASN214 THR215 THR216 LYS217 ARG218 ASP219 LYS220 ASN221 SER222 PHE223 ASP224 PHE225 THR226 MSE227 ASN228 TRP229 ALA230 LYS231 SER232 ASP233 ASN234 THR235 LEU236 ILE237 LYS238 ASP239 LEU240 LYS241 ASP242 PHE243 THR244 ALA245 THR246 CYS247 PHE248 GLN249 LYS250 HIS251 THR252 LEU253 LEU254 ASN255 VAL256 LEU257 VAL258 ASN259 TYR260 SER261 VAL262 PHE263 ASP264 SER265 SER266 GLN267 THR268 LEU269 LEU270 VAL271 MSE272 ARG273 PRO274 TYR275 GLN276 ILE277 ALA278 ALA279 THR280 GLU281 ARG282 ILE283 LEU284 TRP285 LYS286 ILE287 LYS288 SER289 SER290 PHE291 THR292 ALA293 LYS294 ASN295 TRP296 SER297 LYS298 PRO299 GLU300 SER301 GLY302 GLY303 TYR304 ILE305 TRP306 HIS307 THR308 THR309 GLY310 SER311 GLY312 LYS313 THR314 LEU315 THR316 SER317 PHE318 LYS319 ALA320 ALA321 ARG322 LEU323 ALA324 THR325 GLU326 LEU327 ASP328 PHE329 ILE330 ASP331 LYS332 VAL333 PHE334 PHE335 VAL336 VAL337 ASP338 ARG339 LYS340 ASP341 LEU342 ASP343 TYR344 GLN345 THR346 MSE347 LYS348 GLU349 TYR350 GLN351 ARG352 PHE353 SER354 PRO355 ASP356 SER357 VAL358 ASN359 GLY360 SER361 GLU362 ASN363 THR364 ALA365 GLY366 LEU367 LYS368 ARG369 ASN370 LEU371 ASP372 LYS373 ASP374 ASP375 ASN376 LYS377 ILE378 ILE379 VAL380 THR381 THR382 ILE383 GLN384 LYS385 LEU386 ASN387 ASN388 LEU389 MSE390 LYS391 ALA392 GLU393 SER394 ASP395 LEU396 PRO397 VAL398 TYR399 ASN400 GLN401 GLN402 VAL403 VAL404 PHE405 ILE406 PHE407 ASP408 GLU409 CYS410 HIS411 ARG412 SER413 GLN414 PHE415 GLY416 GLU417 ALA418 GLN419 LYS420 ASN421 LEU422 LYS423 LYS424 LYS425 PHE426 LYS427 ARG428 TYR429 TYR430 GLN431 PHE432 GLY433 PHE434 THR435 GLY436 THR437 PRO438 ILE439 PHE440 PRO441 GLU442 ASN443 ALA444 LEU445 GLY446 SER447 GLU448 THR449 THR450 ALA451 SER452 VAL453 PHE454 GLY455 ARG456 GLU457 LEU458 HIS459 SER460 TYR461 VAL462 ILE463 THR464 ASP465 ALA466 ILE467 ARG468 ASP469 GLU470 LYS471 VAL472 LEU473 LYS474 PHE475 LYS476 VAL477 ASP478 TYR479 ASN480 ASP481 VAL482 ARG483 PRO484 GLN485 PHE486 LYS487 SER488 LEU489 GLU490 THR491 GLU492 THR493 ASP494 GLU495 LYS496 LYS497 LEU498 SER499 ALA500 ALA501 GLU502 ASN503 GLN504 GLN505 ALA506 PHE507 LEU508 HIS509 PRO510 MSE511 ARG512 ILE513 GLN514 GLU515 ILE516 THR517 GLN518 TYR519 ILE520 LEU521 ASN522 ASN523 PHE524 ARG525 GLN526 LYS527 THR528 HIS529 ARG530 THR531 PHE532 PRO533 GLY534 SER535 LYS536 GLY537 PHE538 ASN539 ALA540 MSE541 LEU542 ALA543 VAL544 SER545 SER546 VAL547 ASP548 ALA549 ALA550 LYS551 ALA552 TYR553 TYR554 ALA555 THR556 PHE557 LYS558 ARG559 LEU560 GLN561 GLU562 GLU563 ALA564 ALA565 ASN566 LYS567 SER568 ALA569 THR570 TYR571 LYS572 PRO573 LEU574 ARG575 ILE576 ALA577 THR578 ILE579 PHE580 SER581 PHE582 ALA583 ALA584 ILE591 GLY592 GLU593 ILE594 SER595 ASP596 GLU597 THR598 PHE599 ASP600 THR601 SER602 ALA603 MSE604 ASP605 SER606 SER607 ALA608 LYS609 GLU610 PHE611 LEU612 ASP613 ALA614 ALA615 ILE616 ARG617 GLU618 TYR619 ASN620 SER621 HIS622 PHE623 LYS624 THR625 ASN626 PHE627 SER628 THR629 ASP630 SER631 ASN632 GLY633 PHE634 GLN635 ASN636 TYR637 TYR638 ARG639 ASP640 LEU641 ALA642 GLN643 ARG644 VAL645 LYS646 ASN647 GLN648 ASP649 ILE650 ASP651 LEU652 LEU653 ILE654 VAL655 VAL656 GLY657 MSE658 PHE659 LEU660 THR661 GLY662 PHE663 ASP664 ALA665 PRO666 THR667 LEU668 ASN669 THR670 LEU671 PHE672 VAL673 ASP674 LYS675 ASN676 LEU677 ARG678 TYR679 HIS680 GLY681 LEU682 MSE683 GLN684 ALA685 PHE686 SER687 ARG688 THR689 ASN690 ARG691 ILE692 TYR693 ASP694 ALA695 THR696 LYS697 THR698 PHE699 GLY700 ASN701 ILE702 VAL703 THR704 PHE705 ARG706 ASP707 LEU708 GLU709 ARG710 SER711 THR712 ILE713 ASP714 ALA715 ILE716 THR717 LEU718 PHE719 GLY720 ASP721 LYS722 ASN723 THR724 LYS725 ASN726 VAL727 VAL728 LEU729 GLU730 LYS731 SER732 TYR733 THR734 GLU735 TYR736 MSE737 GLU738 GLY739 PHE740 THR741 ASP742 ALA743 ALA744 THR745 GLY746 GLU747 ALA748 LYS749 ARG750 GLY751 PHE752 MSE753 THR754 VAL755 VAL756 SER757 GLU758 LEU759 GLU760 GLN761 ARG762 PHE763 PRO764 ASP765 PRO766 THR767 SER768 ILE769 GLU770 SER771 GLU772 LYS773 GLU774 LYS775 LYS776 ASP777 PHE778 VAL779 LYS780 LEU781 PHE782 GLY783 GLU784 TYR785 LEU786 ARG787 ALA788 GLU789 ASN790 ILE791 LEU792 GLN793 ASN794 TYR795 ASP796 GLU797 PHE798 ALA799 THR800 LEU801 LYS802 ALA803 LEU804 GLN805 GLN806 ILE807 ASP808 LEU809 SER810 ASP811 PRO812 VAL813 ALA814 VAL815 GLU816 LYS817 PHE818 LYS819 ALA820 GLU821 HIS822 TYR823 VAL824 ASP825 ASP826 GLU827 LYS828 PHE829 ALA830 GLU831 LEU832 GLN833 THR834 ILE835 ARG836 LEU837 PRO838 ALA839 ASP840 ARG841 LYS842 ILE843 GLN844 ASP845 TYR846 ARG847 SER848 ALA849 TYR850 ASN851 ASP852 ILE853 ARG854 ASP855 TRP856 GLN857 ARG858 ARG859 GLU860 LYS861 GLU862 THR870 THR871 ASP872 TRP873 ASP874 ASP875 VAL876 VAL877 PHE878 GLU879 VAL880 ASP881 LEU882 LEU883 LYS884 SER885 GLN886 GLU887 ILE888 ASN889 LEU890 ASP891 TYR892
Ligands
Unit 3 ATP1886 MG1887
Unit 4 ATP1893 MG1894
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany