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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF E.COLI GAPDH RAT SPERM GAPDH HETEROTETRAMER
Keywords OXIDOREDUCTASE, GAPDH, CONTRACEPTIVE, RAT SPERM, GLYCERALDEH PHOSPHATE, ALPHA CHLOROHYDRIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2VYN     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  A 330 2476 16
2  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  B 330 2476 16
3  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  C 330 2476 16
4  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  D 334 2535 15
5  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  A 4 0 53
6  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  B 5 0 56
7  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  C 3 0 50
8  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  D 6 0 59
9 Water     844 0 844
total       2186 9963 1125
Proteins
Unit 1 THR0 ILE1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 ILE14 VAL15 PHE16 ARG17 ALA18 ALA19 GLN20 LYS21 ARG22 SER23 ASP24 ILE25 GLU26 ILE27 VAL28 ALA29 ILE30 ASN31 ASP32 LEU33 LEU34 ASP35 ALA36 ASP37 TYR38 MET39 ALA40 TYR41 MET42 LEU43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 ARG51 PHE52 ASP53 GLY54 THR55 VAL56 GLU57 VAL58 LYS59 ASP60 GLY61 HIS62 LEU63 ILE64 VAL65 ASN66 GLY67 LYS68 LYS69 ILE70 ARG71 VAL72 THR73 ALA74 GLU75 ARG76 ASP77 PRO78 ALA79 ASN80 LEU81 LYS82 TRP83 ASP84 GLU85 VAL86 GLY87 VAL88 ASP89 VAL90 VAL91 ALA92 GLU93 ALA94 THR95 GLY96 LEU97 PHE98 LEU99 THR100 ASP101 GLU102 THR103 ALA104 ARG105 LYS106 HIS107 ILE108 THR109 ALA110 GLY111 ALA112 LYS113 LYS114 VAL115 VAL116 MET117 THR118 GLY119 PRO120 SER121 LYS122 ASP123 ASN124 THR125 PRO126 MET127 PHE128 VAL129 LYS130 GLY131 ALA132 ASN133 PHE134 ASP135 LYS136 TYR137 ALA138 GLY139 GLN140 ASP141 ILE142 VAL143 SER144 ASN145 ALA146 SER147 CSD148 THR149 THR150 ASN151 CYS152 LEU153 ALA154 PRO155 LEU156 ALA157 LYS158 VAL159 ILE160 ASN161 ASP162 ASN163 PHE164 GLY165 ILE166 ILE167 GLU168 GLY169 LEU170 MET171 THR172 THR173 VAL174 HIS175 ALA176 THR177 THR178 ALA179 THR180 GLN181 LYS182 THR183 VAL184 ASP185 GLY186 PRO187 SER188 HIS189 LYS190 ASP191 TRP192 ARG193 GLY194 GLY195 ARG196 GLY197 ALA198 SER199 GLN200 ASN201 ILE202 ILE203 PRO204 SER205 SER206 THR207 GLY208 ALA209 ALA210 LYS211 ALA212 VAL213 GLY214 LYS215 VAL216 LEU217 PRO218 GLU219 LEU220 ASN221 GLY222 LYS223 LEU224 THR225 GLY226 MET227 ALA228 PHE229 ARG230 VAL231 PRO232 THR233 PRO234 ASN235 VAL236 SER237 VAL238 VAL239 ASP240 LEU241 THR242 VAL243 ARG244 LEU245 GLU246 LYS247 ALA248 ALA249 THR250 TYR251 GLU252 GLN253 ILE254 LYS255 ALA256 ALA257 VAL258 LYS259 ALA260 ALA261 ALA262 GLU263 GLY264 GLU265 MET266 LYS267 GLY268 VAL269 LEU270 GLY271 TYR272 THR273 GLU274 ASP275 ASP276 VAL277 VAL278 SER279 THR280 ASP281 PHE282 ASN283 GLY284 GLU285 VAL286 CSD287 THR288 SER289 VAL290 PHE291 ASP292 ALA293 LYS294 ALA295 GLY296 ILE297 ALA298 LEU299 ASN300 ASP301 ASN302 PHE303 VAL304 LYS305 LEU306 VAL307 SER308 TRP309 TYR310 ASP311 ASN312 GLU313 THR314 GLY315 TYR316 SER317 ASN318 LYS319 VAL320 LEU321 ASP322 LEU323 ILE324 ALA325 HIS326 ILE327 SER328 LYS329
Unit 2 THR0 ILE1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 ILE14 VAL15 PHE16 ARG17 ALA18 ALA19 GLN20 LYS21 ARG22 SER23 ASP24 ILE25 GLU26 ILE27 VAL28 ALA29 ILE30 ASN31 ASP32 LEU33 LEU34 ASP35 ALA36 ASP37 TYR38 MET39 ALA40 TYR41 MET42 LEU43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 ARG51 PHE52 ASP53 GLY54 THR55 VAL56 GLU57 VAL58 LYS59 ASP60 GLY61 HIS62 LEU63 ILE64 VAL65 ASN66 GLY67 LYS68 LYS69 ILE70 ARG71 VAL72 THR73 ALA74 GLU75 ARG76 ASP77 PRO78 ALA79 ASN80 LEU81 LYS82 TRP83 ASP84 GLU85 VAL86 GLY87 VAL88 ASP89 VAL90 VAL91 ALA92 GLU93 ALA94 THR95 GLY96 LEU97 PHE98 LEU99 THR100 ASP101 GLU102 THR103 ALA104 ARG105 LYS106 HIS107 ILE108 THR109 ALA110 GLY111 ALA112 LYS113 LYS114 VAL115 VAL116 MET117 THR118 GLY119 PRO120 SER121 LYS122 ASP123 ASN124 THR125 PRO126 MET127 PHE128 VAL129 LYS130 GLY131 ALA132 ASN133 PHE134 ASP135 LYS136 TYR137 ALA138 GLY139 GLN140 ASP141 ILE142 VAL143 SER144 ASN145 ALA146 SER147 CSD148 THR149 THR150 ASN151 CYS152 LEU153 ALA154 PRO155 LEU156 ALA157 LYS158 VAL159 ILE160 ASN161 ASP162 ASN163 PHE164 GLY165 ILE166 ILE167 GLU168 GLY169 LEU170 MET171 THR172 THR173 VAL174 HIS175 ALA176 THR177 THR178 ALA179 THR180 GLN181 LYS182 THR183 VAL184 ASP185 GLY186 PRO187 SER188 HIS189 LYS190 ASP191 TRP192 ARG193 GLY194 GLY195 ARG196 GLY197 ALA198 SER199 GLN200 ASN201 ILE202 ILE203 PRO204 SER205 SER206 THR207 GLY208 ALA209 ALA210 LYS211 ALA212 VAL213 GLY214 LYS215 VAL216 LEU217 PRO218 GLU219 LEU220 ASN221 GLY222 LYS223 LEU224 THR225 GLY226 MET227 ALA228 PHE229 ARG230 VAL231 PRO232 THR233 PRO234 ASN235 VAL236 SER237 VAL238 VAL239 ASP240 LEU241 THR242 VAL243 ARG244 LEU245 GLU246 LYS247 ALA248 ALA249 THR250 TYR251 GLU252 GLN253 ILE254 LYS255 ALA256 ALA257 VAL258 LYS259 ALA260 ALA261 ALA262 GLU263 GLY264 GLU265 MET266 LYS267 GLY268 VAL269 LEU270 GLY271 TYR272 THR273 GLU274 ASP275 ASP276 VAL277 VAL278 SER279 THR280 ASP281 PHE282 ASN283 GLY284 GLU285 VAL286 CSD287 THR288 SER289 VAL290 PHE291 ASP292 ALA293 LYS294 ALA295 GLY296 ILE297 ALA298 LEU299 ASN300 ASP301 ASN302 PHE303 VAL304 LYS305 LEU306 VAL307 SER308 TRP309 TYR310 ASP311 ASN312 GLU313 THR314 GLY315 TYR316 SER317 ASN318 LYS319 VAL320 LEU321 ASP322 LEU323 ILE324 ALA325 HIS326 ILE327 SER328 LYS329
Unit 3 THR0 ILE1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 ILE14 VAL15 PHE16 ARG17 ALA18 ALA19 GLN20 LYS21 ARG22 SER23 ASP24 ILE25 GLU26 ILE27 VAL28 ALA29 ILE30 ASN31 ASP32 LEU33 LEU34 ASP35 ALA36 ASP37 TYR38 MET39 ALA40 TYR41 MET42 LEU43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 ARG51 PHE52 ASP53 GLY54 THR55 VAL56 GLU57 VAL58 LYS59 ASP60 GLY61 HIS62 LEU63 ILE64 VAL65 ASN66 GLY67 LYS68 LYS69 ILE70 ARG71 VAL72 THR73 ALA74 GLU75 ARG76 ASP77 PRO78 ALA79 ASN80 LEU81 LYS82 TRP83 ASP84 GLU85 VAL86 GLY87 VAL88 ASP89 VAL90 VAL91 ALA92 GLU93 ALA94 THR95 GLY96 LEU97 PHE98 LEU99 THR100 ASP101 GLU102 THR103 ALA104 ARG105 LYS106 HIS107 ILE108 THR109 ALA110 GLY111 ALA112 LYS113 LYS114 VAL115 VAL116 MET117 THR118 GLY119 PRO120 SER121 LYS122 ASP123 ASN124 THR125 PRO126 MET127 PHE128 VAL129 LYS130 GLY131 ALA132 ASN133 PHE134 ASP135 LYS136 TYR137 ALA138 GLY139 GLN140 ASP141 ILE142 VAL143 SER144 ASN145 ALA146 SER147 CSD148 THR149 THR150 ASN151 CYS152 LEU153 ALA154 PRO155 LEU156 ALA157 LYS158 VAL159 ILE160 ASN161 ASP162 ASN163 PHE164 GLY165 ILE166 ILE167 GLU168 GLY169 LEU170 MET171 THR172 THR173 VAL174 HIS175 ALA176 THR177 THR178 ALA179 THR180 GLN181 LYS182 THR183 VAL184 ASP185 GLY186 PRO187 SER188 HIS189 LYS190 ASP191 TRP192 ARG193 GLY194 GLY195 ARG196 GLY197 ALA198 SER199 GLN200 ASN201 ILE202 ILE203 PRO204 SER205 SER206 THR207 GLY208 ALA209 ALA210 LYS211 ALA212 VAL213 GLY214 LYS215 VAL216 LEU217 PRO218 GLU219 LEU220 ASN221 GLY222 LYS223 LEU224 THR225 GLY226 MET227 ALA228 PHE229 ARG230 VAL231 PRO232 THR233 PRO234 ASN235 VAL236 SER237 VAL238 VAL239 ASP240 LEU241 THR242 VAL243 ARG244 LEU245 GLU246 LYS247 ALA248 ALA249 THR250 TYR251 GLU252 GLN253 ILE254 LYS255 ALA256 ALA257 VAL258 LYS259 ALA260 ALA261 ALA262 GLU263 GLY264 GLU265 MET266 LYS267 GLY268 VAL269 LEU270 GLY271 TYR272 THR273 GLU274 ASP275 ASP276 VAL277 VAL278 SER279 THR280 ASP281 PHE282 ASN283 GLY284 GLU285 VAL286 CSD287 THR288 SER289 VAL290 PHE291 ASP292 ALA293 LYS294 ALA295 GLY296 ILE297 ALA298 LEU299 ASN300 ASP301 ASN302 PHE303 VAL304 LYS305 LEU306 VAL307 SER308 TRP309 TYR310 ASP311 ASN312 GLU313 THR314 GLY315 TYR316 SER317 ASN318 LYS319 VAL320 LEU321 ASP322 LEU323 ILE324 ALA325 HIS326 ILE327 SER328 LYS329
Unit 4 MET0 VAL1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 LEU14 VAL15 LEU16 ARG17 VAL18 CYS19 MET20 GLU21 LYS22 GLY23 VAL24 ARG25 VAL26 VAL27 ALA28 VAL29 ASN30 ASP31 PRO32 PHE33 ILE34 ASP35 PRO36 GLU37 TYR38 MET39 VAL40 TYR41 MET42 PHE43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 ARG51 TYR52 LYS53 GLY54 THR55 VAL56 GLU57 HIS58 LYS59 ASN60 GLY61 ARG62 LEU63 VAL64 VAL65 ASP66 ASN67 LEU68 GLU69 ILE70 ASN71 VAL72 PHE73 GLN74 CSX75 LYS76 GLU77 PRO78 LYS79 GLU80 ILE81 PRO82 TRP83 SER84 SER85 VAL86 GLY87 ASN88 PRO89 TYR90 VAL91 VAL92 GLU93 ALA94 THR95 GLY96 VAL97 TYR98 LEU99 SER100 ILE101 GLU102 ALA103 ALA104 SER105 GLY106 HIS107 ILE108 SER109 SER110 GLY111 ALA112 ARG113 ARG114 VAL115 ILE116 VAL117 THR118 ALA119 PRO120 SER121 PRO122 ASP123 ALA124 PRO125 MET126 LEU127 VAL128 MET129 GLY130 VAL131 ASN132 GLU133 LYS134 ASP135 TYR136 ASN137 PRO138 GLY139 SER140 MET141 THR142 VAL143 VAL144 SER145 ASN146 ALA147 SER148 CSD149 THR150 THR151 ASN152 CYS153 LEU154 ALA155 PRO156 LEU157 ALA158 LYS159 VAL160 ILE161 HIS162 GLU163 ARG164 PHE165 GLY166 ILE167 VAL168 GLU169 GLY170 LEU171 MET172 THR173 THR174 VAL175 HIS176 ALA177 TYR178 THR179 ALA180 THR181 GLN182 LYS183 THR184 VAL185 ASP186 GLY187 PRO188 SER189 LYS190 LYS191 ASP192 TRP193 ARG194 GLY195 GLY196 ARG197 GLY198 ALA199 HIS200 GLN201 ASN202 ILE203 ILE204 PRO205 SER206 SER207 THR208 GLY209 ALA210 ALA211 LYS212 ALA213 VAL214 GLY215 LYS216 VAL217 ILE218 PRO219 GLU220 LEU221 ASN222 GLY223 LYS224 LEU225 THR226 GLY227 MET228 ALA229 PHE230 ARG231 VAL232 PRO233 THR234 PRO235 ASN236 VAL237 SER238 VAL239 VAL240 ASP241 LEU242 THR243 CYS244 ARG245 LEU246 ALA247 GLN248 PRO249 ALA250 SER251 TYR252 THR253 ALA254 ILE255 LYS256 GLU257 ALA258 VAL259 LYS260 ALA261 ALA262 ALA263 LYS264 GLY265 PRO266 MET267 ALA268 GLY269 ILE270 LEU271 ALA272 TYR273 THR274 GLU275 ASP276 GLN277 VAL278 VAL279 SER280 THR281 ASP282 PHE283 ASN284 GLY285 ASP286 SER287 HIS288 SER289 SER290 ILE291 PHE292 ASP293 ALA294 LYS295 ALA296 GLY297 ILE298 ALA299 LEU300 ASN301 ASP302 ASN303 PHE304 VAL305 LYS306 LEU307 VAL308 SER309 TRP310 TYR311 ASP312 ASN313 GLU314 TYR315 GLY316 TYR317 SER318 HIS319 ARG320 VAL321 VAL322 ASP323 LEU324 LEU325 ARG326 TYR327 MET328 PHE329 SER330 ARG331 GLU332 LYS333
Ligands
Unit 5 FMT1332 FMT1333 FMT1334 NAD1335
Unit 6 FMT1332 FMT1333 FMT1334 FMT1335 NAD1336
Unit 7 FMT1332 FMT1333 NAD1334
Unit 8 FMT1336 FMT1337 FMT1338 FMT1339 FMT1340 NAD1341
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany