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Sequence, Chains, Asymmetric and Biological Units

Title H. HALOPHILA DODECIN IN COMPLEX WITH RIBOFLAVIN
Keywords FLAVOPROTEIN, DODECIN, FLAVIN, RIBOFLAVIN, LUMICHROME, ARCHA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2VXA     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DODECIN  A 67 522 0
2  Protein   DODECIN  B 67 522 0
3  Protein   DODECIN  C 67 522 0
4  Protein   DODECIN  D 67 522 0
5  Protein   DODECIN  E 67 522 0
6  Protein   DODECIN  F 67 522 0
7  Protein   DODECIN  G 67 522 0
8  Protein   DODECIN  H 67 522 0
9  Protein   DODECIN  I 67 525 0
10  Protein   DODECIN  J 67 522 0
11  Protein   DODECIN  K 67 522 0
12  Protein   DODECIN  L 67 522 0
13  Ligand   DODECIN  A 3 0 29
14  Ligand   DODECIN  B 3 0 29
15  Ligand   DODECIN  C 3 0 29
16  Ligand   DODECIN  D 4 0 30
17  Ligand   DODECIN  E 4 0 30
18  Ligand   DODECIN  F 2 0 28
19  Ligand   DODECIN  G 5 0 31
20  Ligand   DODECIN  H 2 0 28
21  Ligand   DODECIN  I 3 0 29
22  Ligand   DODECIN  J 3 0 29
23  Ligand   DODECIN  K 3 0 29
24  Ligand   DODECIN  L 1 0 27
total       840 6267 348

Proteins
Unit 1 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 2 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 3 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 4 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 5 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 6 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 7 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 8 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 9 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 10 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 11 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69
Unit 12 ASP3 HIS4 VAL5 TYR6 LYS7 ILE8 VAL9 GLU10 LEU11 THR12 GLY13 SER14 SER15 PRO16 ASN17 GLY18 ILE19 GLU20 GLU21 ALA22 VAL23 ASN24 ASN25 ALA26 ILE27 ALA28 ARG29 ALA30 GLY31 GLU32 THR33 LEU34 ARG35 HIS36 LEU37 ARG38 TRP39 PHE40 GLU41 VAL42 VAL43 ASP44 THR45 ARG46 GLY47 HIS48 ILE49 GLU50 GLY51 GLY52 ARG53 VAL54 ASN55 HIS56 TRP57 GLN58 VAL59 THR60 VAL61 LYS62 VAL63 GLY64 PHE65 THR66 LEU67 GLU68 GLY69

Ligands
Unit 13 RBF200 CL1069 CL1070
Unit 14 RBF200 CL1069 CL1070
Unit 15 RBF200 CL1069 CL1070
Unit 16 RBF200 CL1069 CL1070 CL1071
Unit 17 RBF200 CL1069 CL1070 CL1071
Unit 18 RBF200 CL1069
Unit 19 RBF200 CL1069 CL1070 CL1071 CL1072
Unit 20 RBF200 CL1069
Unit 21 RBF200 CL1069 CL1070
Unit 22 RBF200 CL1069 CL1070
Unit 23 RBF200 CL1069 CL1070
Unit 24 RBF200

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany