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Title | CRYSTAL STRUCTURE OF YFAU, A METAL ION DEPENDENT CLASS II ALDOLASE FROM ESCHERICHIA COLI K12 | |
Keywords | LYASE, ESCHERICHIA COLI K-12 PROTEIN YFAU, 2-KETO-3-DEOXY SU ALDOLASE, DEGRADATION OF HOMOPROTOCATECHUATE, CLASS II ALDO (BETA/ALPHA)8 BARREL | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2VWS | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE | A | 256 | 1951 | 0 |
2 | Protein | YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE | B | 256 | 1951 | 0 |
3 | Protein | YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE | C | 256 | 1951 | 0 |
4 | Ligand | YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE | A | 2 | 0 | 10 |
5 | Ligand | YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE | B | 1 | 0 | 5 |
6 | Ligand | YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE | C | 3 | 0 | 17 |
7 | Water | 959 | 0 | 959 | ||
total | 1733 | 5853 | 991 |
Unit 1 | MET1 ASN2 ALA3 LEU4 LEU5 SER6 ASN7 PRO8 PHE9 LYS10 GLU11 ARG12 LEU13 ARG14 LYS15 GLY16 GLU17 VAL18 GLN19 ILE20 GLY21 LEU22 TRP23 LEU24 SER25 SER26 THR27 THR28 ALA29 TYR30 MET31 ALA32 GLU33 ILE34 ALA35 ALA36 THR37 SER38 GLY39 TYR40 ASP41 TRP42 LEU43 LEU44 ILE45 ASP46 GLY47 GLU48 HIS49 ALA50 PRO51 ASN52 THR53 ILE54 GLN55 ASP56 LEU57 TYR58 HIS59 GLN60 LEU61 GLN62 ALA63 VAL64 ALA65 PRO66 TYR67 ALA68 SER69 GLN70 PRO71 VAL72 ILE73 ARG74 PRO75 VAL76 GLU77 GLY78 SER79 LYS80 PRO81 LEU82 ILE83 LYS84 GLN85 VAL86 LEU87 ASP88 ILE89 GLY90 ALA91 GLN92 THR93 LEU94 LEU95 ILE96 PRO97 MET98 VAL99 ASP100 THR101 ALA102 GLU103 GLN104 ALA105 ARG106 GLN107 VAL108 VAL109 SER110 ALA111 THR112 ARG113 TYR114 PRO115 PRO116 TYR117 GLY118 GLU119 ARG120 GLY121 VAL122 GLY123 ALA124 SER125 VAL126 ALA127 ARG128 ALA129 ALA130 ARG131 TRP132 GLY133 ARG134 ILE135 GLU136 ASN137 TYR138 MET139 ALA140 GLN141 VAL142 ASN143 ASP144 SER145 LEU146 CYS147 LEU148 LEU149 VAL150 GLN151 VAL152 GLU153 SER154 LYS155 THR156 ALA157 LEU158 ASP159 ASN160 LEU161 ASP162 GLU163 ILE164 LEU165 ASP166 VAL167 GLU168 GLY169 ILE170 ASP171 GLY172 VAL173 PHE174 ILE175 GLY176 PRO177 ALA178 ASP179 LEU180 SER181 ALA182 SER183 LEU184 GLY185 TYR186 PRO187 ASP188 ASN189 ALA190 GLY191 HIS192 PRO193 GLU194 VAL195 GLN196 ARG197 ILE198 ILE199 GLU200 THR201 SER202 ILE203 ARG204 ARG205 ILE206 ARG207 ALA208 ALA209 GLY210 LYS211 ALA212 ALA213 GLY214 PHE215 LEU216 ALA217 VAL218 ALA219 PRO220 ASP221 MET222 ALA223 GLN224 GLN225 CYS226 LEU227 ALA228 TRP229 GLY230 ALA231 ASN232 PHE233 VAL234 ALA235 VAL236 GLY237 VAL238 ASP239 THR240 MET241 LEU242 TYR243 SER244 ASP245 ALA246 LEU247 ASP248 GLN249 ARG250 LEU251 ALA252 MET253 PHE254 LYS255 SER256 |
Unit 2 | MET1 ASN2 ALA3 LEU4 LEU5 SER6 ASN7 PRO8 PHE9 LYS10 GLU11 ARG12 LEU13 ARG14 LYS15 GLY16 GLU17 VAL18 GLN19 ILE20 GLY21 LEU22 TRP23 LEU24 SER25 SER26 THR27 THR28 ALA29 TYR30 MET31 ALA32 GLU33 ILE34 ALA35 ALA36 THR37 SER38 GLY39 TYR40 ASP41 TRP42 LEU43 LEU44 ILE45 ASP46 GLY47 GLU48 HIS49 ALA50 PRO51 ASN52 THR53 ILE54 GLN55 ASP56 LEU57 TYR58 HIS59 GLN60 LEU61 GLN62 ALA63 VAL64 ALA65 PRO66 TYR67 ALA68 SER69 GLN70 PRO71 VAL72 ILE73 ARG74 PRO75 VAL76 GLU77 GLY78 SER79 LYS80 PRO81 LEU82 ILE83 LYS84 GLN85 VAL86 LEU87 ASP88 ILE89 GLY90 ALA91 GLN92 THR93 LEU94 LEU95 ILE96 PRO97 MET98 VAL99 ASP100 THR101 ALA102 GLU103 GLN104 ALA105 ARG106 GLN107 VAL108 VAL109 SER110 ALA111 THR112 ARG113 TYR114 PRO115 PRO116 TYR117 GLY118 GLU119 ARG120 GLY121 VAL122 GLY123 ALA124 SER125 VAL126 ALA127 ARG128 ALA129 ALA130 ARG131 TRP132 GLY133 ARG134 ILE135 GLU136 ASN137 TYR138 MET139 ALA140 GLN141 VAL142 ASN143 ASP144 SER145 LEU146 CYS147 LEU148 LEU149 VAL150 GLN151 VAL152 GLU153 SER154 LYS155 THR156 ALA157 LEU158 ASP159 ASN160 LEU161 ASP162 GLU163 ILE164 LEU165 ASP166 VAL167 GLU168 GLY169 ILE170 ASP171 GLY172 VAL173 PHE174 ILE175 GLY176 PRO177 ALA178 ASP179 LEU180 SER181 ALA182 SER183 LEU184 GLY185 TYR186 PRO187 ASP188 ASN189 ALA190 GLY191 HIS192 PRO193 GLU194 VAL195 GLN196 ARG197 ILE198 ILE199 GLU200 THR201 SER202 ILE203 ARG204 ARG205 ILE206 ARG207 ALA208 ALA209 GLY210 LYS211 ALA212 ALA213 GLY214 PHE215 LEU216 ALA217 VAL218 ALA219 PRO220 ASP221 MET222 ALA223 GLN224 GLN225 CYS226 LEU227 ALA228 TRP229 GLY230 ALA231 ASN232 PHE233 VAL234 ALA235 VAL236 GLY237 VAL238 ASP239 THR240 MET241 LEU242 TYR243 SER244 ASP245 ALA246 LEU247 ASP248 GLN249 ARG250 LEU251 ALA252 MET253 PHE254 LYS255 SER256 |
Unit 3 | MET1 ASN2 ALA3 LEU4 LEU5 SER6 ASN7 PRO8 PHE9 LYS10 GLU11 ARG12 LEU13 ARG14 LYS15 GLY16 GLU17 VAL18 GLN19 ILE20 GLY21 LEU22 TRP23 LEU24 SER25 SER26 THR27 THR28 ALA29 TYR30 MET31 ALA32 GLU33 ILE34 ALA35 ALA36 THR37 SER38 GLY39 TYR40 ASP41 TRP42 LEU43 LEU44 ILE45 ASP46 GLY47 GLU48 HIS49 ALA50 PRO51 ASN52 THR53 ILE54 GLN55 ASP56 LEU57 TYR58 HIS59 GLN60 LEU61 GLN62 ALA63 VAL64 ALA65 PRO66 TYR67 ALA68 SER69 GLN70 PRO71 VAL72 ILE73 ARG74 PRO75 VAL76 GLU77 GLY78 SER79 LYS80 PRO81 LEU82 ILE83 LYS84 GLN85 VAL86 LEU87 ASP88 ILE89 GLY90 ALA91 GLN92 THR93 LEU94 LEU95 ILE96 PRO97 MET98 VAL99 ASP100 THR101 ALA102 GLU103 GLN104 ALA105 ARG106 GLN107 VAL108 VAL109 SER110 ALA111 THR112 ARG113 TYR114 PRO115 PRO116 TYR117 GLY118 GLU119 ARG120 GLY121 VAL122 GLY123 ALA124 SER125 VAL126 ALA127 ARG128 ALA129 ALA130 ARG131 TRP132 GLY133 ARG134 ILE135 GLU136 ASN137 TYR138 MET139 ALA140 GLN141 VAL142 ASN143 ASP144 SER145 LEU146 CYS147 LEU148 LEU149 VAL150 GLN151 VAL152 GLU153 SER154 LYS155 THR156 ALA157 LEU158 ASP159 ASN160 LEU161 ASP162 GLU163 ILE164 LEU165 ASP166 VAL167 GLU168 GLY169 ILE170 ASP171 GLY172 VAL173 PHE174 ILE175 GLY176 PRO177 ALA178 ASP179 LEU180 SER181 ALA182 SER183 LEU184 GLY185 TYR186 PRO187 ASP188 ASN189 ALA190 GLY191 HIS192 PRO193 GLU194 VAL195 GLN196 ARG197 ILE198 ILE199 GLU200 THR201 SER202 ILE203 ARG204 ARG205 ILE206 ARG207 ALA208 ALA209 GLY210 LYS211 ALA212 ALA213 GLY214 PHE215 LEU216 ALA217 VAL218 ALA219 PRO220 ASP221 MET222 ALA223 GLN224 GLN225 CYS226 LEU227 ALA228 TRP229 GLY230 ALA231 ASN232 PHE233 VAL234 ALA235 VAL236 GLY237 VAL238 ASP239 THR240 MET241 LEU242 TYR243 SER244 ASP245 ALA246 LEU247 ASP248 GLN249 ARG250 LEU251 ALA252 MET253 PHE254 LYS255 SER256 |
Unit 4 | PO41257 PO41258 |
Unit 5 | PO41257 |
Unit 6 | PO41257 GOL1258 GOL1259 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |