2VUG - Sequence, Chains, Asymmetric and Biological Units

• Title: THE STRUCTURE OF AN ARCHAEAL HOMODIMERIC RNA LIGASE
• Keywords: RNA, LIGASE, AMPPNP, PAB1020, PYROCOCCUS ABYSSI, NUCLEOTIDYL TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2VUG	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PAB1020	A	373	3047	0
2	Protein	PAB1020	B	373	3047	0
3	Ligand	PAB1020	A	3	0	47
4	Ligand	PAB1020	B	6	0	71
5	Water			10	0	10
total				765	6094	128

Proteins

Unit 1

LYS 10 GLU 11 ILE 12 LEU 13 VAL 14 LYS 15 LEU 16 GLY 17 LEU 18 THR 19 GLU 20 ASP 21 ARG 22 ILE 23 GLU 24 THR 25 LEU 26 GLU 27 MET 28 LYS 29 GLY 30 GLY 31 ILE 32 ILE 33 GLU 34 ASP 35 GLU 36 PHE 37 ASP 38 GLY 39 ILE 40 ARG 41 TYR 42 VAL 43 ARG 44 PHE 45 LYS 46 ASP 47 SER 48 ALA 49 GLY 50 LYS 51 LEU 52 ARG 53 ARG 54 GLY 55 THR 56 VAL 57 VAL 58 ILE 59 ASP 60 GLU 61 GLU 62 TYR 63 VAL 64 ILE 65 PRO 66 GLY 67 PHE 68 PRO 69 HIS 70 ILE 71 LYS 72 ARG 73 ILE 74 ILE 75 ASN 76 LEU 77 ARG 78 SER 79 GLY 80 ILE 81 ARG 82 ARG 83 ILE 84 PHE 85 LYS 86 ARG 87 GLY 88 GLU 89 PHE 90 TYR 91 VAL 92 GLU 93 GLU 94 LYS 95 VAL 96 ASP 97 GLY 98 TYR 99 ASN 100 VAL 101 ARG 102 VAL 103 VAL 104 MET 105 TYR 106 LYS 107 GLY 108 LYS 109 MET 110 LEU 111 GLY 112 ILE 113 THR 114 ARG 115 GLY 116 GLY 117 PHE 118 ILE 119 CYS 120 PRO 121 PHE 122 THR 123 THR 124 GLU 125 ARG 126 ILE 127 PRO 128 ASP 129 PHE 130 VAL 131 PRO 132 GLN 133 GLU 134 PHE 135 PHE 136 LYS 137 ASP 138 ASN 139 PRO 140 ASN 141 LEU 142 ILE 143 LEU 144 VAL 145 GLY 146 GLU 147 MET 148 ALA 149 GLY 150 PRO 151 GLU 152 SER 153 PRO 154 TYR 155 LEU 156 VAL 157 GLU 158 GLY 159 PRO 160 PRO 161 TYR 162 VAL 163 LYS 164 GLU 165 ASP 166 ILE 167 GLN 168 PHE 169 PHE 170 LEU 171 PHE 172 ASP 173 VAL 174 GLN 175 GLU 176 ILE 177 LYS 178 THR 179 GLY 180 ARG 181 SER 182 LEU 183 PRO 184 VAL 185 GLU 186 GLU 187 ARG 188 LEU 189 LYS 190 ILE 191 ALA 192 GLU 193 GLU 194 TYR 195 GLY 196 ILE 197 ASN 198 HIS 199 VAL 200 GLU 201 VAL 202 PHE 203 GLY 204 LYS 205 TYR 206 THR 207 LYS 208 ASP 209 ASP 210 VAL 211 ASP 212 GLU 213 LEU 214 TYR 215 GLN 216 LEU 217 ILE 218 GLU 219 ARG 220 LEU 221 SER 222 LYS 223 GLU 224 GLY 225 ARG 226 GLU 227 GLY 228 ILE 229 ILE 230 MET 231 LYS 232 SER 233 PRO 234 ASP 235 MET 236 LYS 237 LYS 238 ILE 239 VAL 240 LYS 241 TYR 242 VAL 243 THR 244 PRO 245 TYR 246 ALA 247 ASN 248 ILE 249 ASN 250 ASP 251 ILE 252 LYS 253 ILE 254 GLY 255 ALA 256 ARG 257 VAL 258 PHE 259 TYR 260 GLU 261 LEU 262 PRO 263 PRO 264 GLY 265 TYR 266 PHE 267 THR 268 SER 269 ARG 270 ILE 271 SER 272 ARG 273 LEU 274 ALA 275 PHE 276 TYR 277 LEU 278 ALA 279 GLU 280 LYS 281 ARG 282 ILE 283 LYS 284 GLY 285 GLU 286 GLU 287 PHE 288 GLU 289 ARG 290 VAL 291 ALA 292 LYS 293 GLU 294 LEU 295 GLY 296 SER 297 ALA 298 LEU 299 LEU 300 GLN 301 PRO 302 PHE 303 VAL 304 GLU 305 SER 306 ILE 307 PHE 308 ASP 309 VAL 310 GLU 311 GLN 312 GLU 313 GLU 314 ASP 315 ILE 316 HIS 317 GLU 318 LEU 319 PHE 320 LYS 321 VAL 322 ARG 323 VAL 324 LYS 325 ARG 326 ILE 327 GLU 328 THR 329 ALA 330 TYR 331 LYS 332 MET 333 VAL 334 THR 335 HIS 336 PHE 337 GLU 338 LYS 339 LEU 340 GLY 341 LEU 342 LYS 343 ILE 344 GLU 345 ILE 346 VAL 347 ASP 348 ILE 349 GLU 350 GLU 351 ILE 352 LYS 353 ASP 354 GLY 355 TRP 356 ARG 357 ILE 358 THR 359 PHE 360 LYS 361 ARG 362 LEU 363 TYR 364 PRO 365 ASP 366 ALA 367 THR 368 ASN 369 GLU 370 ILE 371 ARG 372 GLU 373 LEU 374 ILE 375 GLY 376 GLY 377 LYS 378 ALA 379 PHE 380 VAL 381 ASP 382

Unit 2

LYS 10 GLU 11 ILE 12 LEU 13 VAL 14 LYS 15 LEU 16 GLY 17 LEU 18 THR 19 GLU 20 ASP 21 ARG 22 ILE 23 GLU 24 THR 25 LEU 26 GLU 27 MET 28 LYS 29 GLY 30 GLY 31 ILE 32 ILE 33 GLU 34 ASP 35 GLU 36 PHE 37 ASP 38 GLY 39 ILE 40 ARG 41 TYR 42 VAL 43 ARG 44 PHE 45 LYS 46 ASP 47 SER 48 ALA 49 GLY 50 LYS 51 LEU 52 ARG 53 ARG 54 GLY 55 THR 56 VAL 57 VAL 58 ILE 59 ASP 60 GLU 61 GLU 62 TYR 63 VAL 64 ILE 65 PRO 66 GLY 67 PHE 68 PRO 69 HIS 70 ILE 71 LYS 72 ARG 73 ILE 74 ILE 75 ASN 76 LEU 77 ARG 78 SER 79 GLY 80 ILE 81 ARG 82 ARG 83 ILE 84 PHE 85 LYS 86 ARG 87 GLY 88 GLU 89 PHE 90 TYR 91 VAL 92 GLU 93 GLU 94 LYS 95 VAL 96 ASP 97 GLY 98 TYR 99 ASN 100 VAL 101 ARG 102 VAL 103 VAL 104 MET 105 TYR 106 LYS 107 GLY 108 LYS 109 MET 110 LEU 111 GLY 112 ILE 113 THR 114 ARG 115 GLY 116 GLY 117 PHE 118 ILE 119 CYS 120 PRO 121 PHE 122 THR 123 THR 124 GLU 125 ARG 126 ILE 127 PRO 128 ASP 129 PHE 130 VAL 131 PRO 132 GLN 133 GLU 134 PHE 135 PHE 136 LYS 137 ASP 138 ASN 139 PRO 140 ASN 141 LEU 142 ILE 143 LEU 144 VAL 145 GLY 146 GLU 147 MET 148 ALA 149 GLY 150 PRO 151 GLU 152 SER 153 PRO 154 TYR 155 LEU 156 VAL 157 GLU 158 GLY 159 PRO 160 PRO 161 TYR 162 VAL 163 LYS 164 GLU 165 ASP 166 ILE 167 GLN 168 PHE 169 PHE 170 LEU 171 PHE 172 ASP 173 VAL 174 GLN 175 GLU 176 ILE 177 LYS 178 THR 179 GLY 180 ARG 181 SER 182 LEU 183 PRO 184 VAL 185 GLU 186 GLU 187 ARG 188 LEU 189 LYS 190 ILE 191 ALA 192 GLU 193 GLU 194 TYR 195 GLY 196 ILE 197 ASN 198 HIS 199 VAL 200 GLU 201 VAL 202 PHE 203 GLY 204 LYS 205 TYR 206 THR 207 LYS 208 ASP 209 ASP 210 VAL 211 ASP 212 GLU 213 LEU 214 TYR 215 GLN 216 LEU 217 ILE 218 GLU 219 ARG 220 LEU 221 SER 222 LYS 223 GLU 224 GLY 225 ARG 226 GLU 227 GLY 228 ILE 229 ILE 230 MET 231 LYS 232 SER 233 PRO 234 ASP 235 MET 236 LYS 237 LYS 238 ILE 239 VAL 240 LYS 241 TYR 242 VAL 243 THR 244 PRO 245 TYR 246 ALA 247 ASN 248 ILE 249 ASN 250 ASP 251 ILE 252 LYS 253 ILE 254 GLY 255 ALA 256 ARG 257 VAL 258 PHE 259 TYR 260 GLU 261 LEU 262 PRO 263 PRO 264 GLY 265 TYR 266 PHE 267 THR 268 SER 269 ARG 270 ILE 271 SER 272 ARG 273 LEU 274 ALA 275 PHE 276 TYR 277 LEU 278 ALA 279 GLU 280 LYS 281 ARG 282 ILE 283 LYS 284 GLY 285 GLU 286 GLU 287 PHE 288 GLU 289 ARG 290 VAL 291 ALA 292 LYS 293 GLU 294 LEU 295 GLY 296 SER 297 ALA 298 LEU 299 LEU 300 GLN 301 PRO 302 PHE 303 VAL 304 GLU 305 SER 306 ILE 307 PHE 308 ASP 309 VAL 310 GLU 311 GLN 312 GLU 313 GLU 314 ASP 315 ILE 316 HIS 317 GLU 318 LEU 319 PHE 320 LYS 321 VAL 322 ARG 323 VAL 324 LYS 325 ARG 326 ILE 327 GLU 328 THR 329 ALA 330 TYR 331 LYS 332 MET 333 VAL 334 THR 335 HIS 336 PHE 337 GLU 338 LYS 339 LEU 340 GLY 341 LEU 342 LYS 343 ILE 344 GLU 345 ILE 346 VAL 347 ASP 348 ILE 349 GLU 350 GLU 351 ILE 352 LYS 353 ASP 354 GLY 355 TRP 356 ARG 357 ILE 358 THR 359 PHE 360 LYS 361 ARG 362 LEU 363 TYR 364 PRO 365 ASP 366 ALA 367 THR 368 ASN 369 GLU 370 ILE 371 ARG 372 GLU 373 LEU 374 ILE 375 GLY 376 GLY 377 LYS 378 ALA 379 PHE 380 VAL 381 ASP 382

Ligands

Unit 3	ANP 401 MPD 501 MPD 502
Unit 4	ANP 401 MPD 501 MPD 502 MPD 503 MRD 504 MRD 505