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Sequence, Chains, Asymmetric and Biological Units

Title PROTEIN-FOLDING LOCATION CAN REGULATE MN VERSUS CU- OR ZN- BINDING. CRYSTAL STRUCTURE OF MNCA.
Keywords PERIPLASMIC BINDING PROTEIN, METAL-BINDING PROTEIN, MN2+, CUPIN, BI-CUPIN, OXALATE DECARBOXYLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2VQA     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SLL1358 PROTEIN  A 356 2748 0
2  Protein   SLL1358 PROTEIN  B 356 2752 0
3  Protein   SLL1358 PROTEIN  C 354 2736 0
4  Ligand   SLL1358 PROTEIN  A 4 0 10
5  Ligand   SLL1358 PROTEIN  B 5 0 14
6  Ligand   SLL1358 PROTEIN  C 5 0 14
7 Water     32 0 32
total       1112 8236 70
Proteins
Unit 1 TRP39 ARG40 SER41 LEU42 SER43 ASN44 VAL45 VAL46 TRP47 GLY48 LYS49 ASP50 LEU51 PRO52 ALA53 PHE54 THR55 TYR56 ALA57 PHE58 SER59 LYS60 THR61 PRO62 LEU63 VAL64 LEU65 TYR66 ASP67 GLY68 GLY69 THR70 THR71 LYS72 GLN73 VAL74 GLY75 THR76 TYR77 ASN78 PHE79 PRO80 VAL81 SER82 LYS83 GLY84 MET85 ALA86 GLY87 VAL88 TYR89 MET90 SER91 LEU92 GLU93 PRO94 GLY95 ALA96 ILE97 ARG98 GLU99 LEU100 HIS101 TRP102 HIS103 ALA104 ASN105 ALA106 ALA107 GLU108 TRP109 ALA110 TYR111 VAL112 MET113 GLU114 GLY115 ARG116 THR117 ARG118 ILE119 THR120 LEU121 THR122 SER123 PRO124 GLU125 GLY126 LYS127 VAL128 GLU129 ILE130 ALA131 ASP132 VAL133 ASP134 LYS135 GLY136 GLY137 LEU138 TRP139 TYR140 PHE141 PRO142 ARG143 GLY144 TRP145 GLY146 HIS147 SER148 ILE149 GLU150 GLY151 ILE152 GLY153 PRO154 ASP155 THR156 ALA157 LYS158 PHE159 LEU160 LEU161 VAL162 PHE163 ASN164 ASP165 GLY166 THR167 PHE168 SER169 GLU170 GLY171 ALA172 THR173 PHE174 SER175 VAL176 THR177 ASP178 TRP179 LEU180 SER181 HIS182 THR183 PRO184 ILE185 ALA186 TRP187 VAL188 GLU189 GLU190 ASN191 LEU192 GLY193 TRP194 THR195 ALA196 ALA197 GLN198 VAL199 ALA200 GLN201 LEU202 PRO203 LYS204 LYS205 GLN206 VAL207 TYR208 ILE209 SER210 SER211 TYR212 GLY213 PRO214 ALA215 SER216 GLY217 PRO218 LEU219 ALA220 SER221 ALA222 THR223 PRO224 GLN225 GLY226 GLN227 THR228 ALA229 LYS230 ILE231 GLU232 VAL233 PRO234 HIS235 THR236 HIS237 ASN238 LEU239 LEU240 GLY241 GLN242 GLN243 PRO244 LEU245 VAL246 SER247 LEU248 GLY249 GLY250 ASN251 GLU252 LEU253 ARG254 LEU255 ALA256 SER257 ALA258 LYS259 GLU260 PHE261 PRO262 GLY263 SER264 PHE265 ASN266 MET267 THR268 GLY269 ALA270 LEU271 ILE272 HIS273 LEU274 GLU275 PRO276 GLY277 ALA278 MET279 ARG280 GLN281 LEU282 HIS283 TRP284 HIS285 PRO286 ASN287 ALA288 ASP289 GLU290 TRP291 GLN292 TYR293 VAL294 LEU295 ASP296 GLY297 GLU298 MET299 ASP300 LEU301 THR302 VAL303 PHE304 ALA305 SER306 GLU307 GLY308 LYS309 ALA310 SER311 VAL312 SER313 ARG314 LEU315 GLN316 GLN317 GLY318 ASP319 VAL320 GLY321 TYR322 VAL323 PRO324 LYS325 GLY326 TYR327 GLY328 HIS329 ALA330 ILE331 ARG332 ASN333 SER334 SER335 GLN336 LYS337 PRO338 LEU339 ASP340 ILE341 VAL342 VAL343 VAL344 PHE345 ASN346 ASP347 GLY348 ASP349 TYR350 GLN351 SER352 ILE353 ASP354 LEU355 SER356 THR357 TRP358 LEU359 ALA360 SER361 ASN362 PRO363 SER364 SER365 VAL366 LEU367 GLY368 ASN369 THR370 PHE371 GLN372 ILE373 SER374 PRO375 GLU376 LEU377 THR378 LYS379 LYS380 LEU381 PRO382 VAL383 GLN384 ASP385 THR386 ILE387 PHE388 SER389 LEU390 PRO391 THR392 GLN393 PRO394
Unit 2 TRP39 ARG40 SER41 LEU42 SER43 ASN44 VAL45 VAL46 TRP47 GLY48 LYS49 ASP50 LEU51 PRO52 ALA53 PHE54 THR55 TYR56 ALA57 PHE58 SER59 LYS60 THR61 PRO62 LEU63 VAL64 LEU65 TYR66 ASP67 GLY68 GLY69 THR70 THR71 LYS72 GLN73 VAL74 GLY75 THR76 TYR77 ASN78 PHE79 PRO80 VAL81 SER82 LYS83 GLY84 MET85 ALA86 GLY87 VAL88 TYR89 MET90 SER91 LEU92 GLU93 PRO94 GLY95 ALA96 ILE97 ARG98 GLU99 LEU100 HIS101 TRP102 HIS103 ALA104 ASN105 ALA106 ALA107 GLU108 TRP109 ALA110 TYR111 VAL112 MET113 GLU114 GLY115 ARG116 THR117 ARG118 ILE119 THR120 LEU121 THR122 SER123 PRO124 GLU125 GLY126 LYS127 VAL128 GLU129 ILE130 ALA131 ASP132 VAL133 ASP134 LYS135 GLY136 GLY137 LEU138 TRP139 TYR140 PHE141 PRO142 ARG143 GLY144 TRP145 GLY146 HIS147 SER148 ILE149 GLU150 GLY151 ILE152 GLY153 PRO154 ASP155 THR156 ALA157 LYS158 PHE159 LEU160 LEU161 VAL162 PHE163 ASN164 ASP165 GLY166 THR167 PHE168 SER169 GLU170 GLY171 ALA172 THR173 PHE174 SER175 VAL176 THR177 ASP178 TRP179 LEU180 SER181 HIS182 THR183 PRO184 ILE185 ALA186 TRP187 VAL188 GLU189 GLU190 ASN191 LEU192 GLY193 TRP194 THR195 ALA196 ALA197 GLN198 VAL199 ALA200 GLN201 LEU202 PRO203 LYS204 LYS205 GLN206 VAL207 TYR208 ILE209 SER210 SER211 TYR212 GLY213 PRO214 ALA215 SER216 GLY217 PRO218 LEU219 ALA220 SER221 ALA222 THR223 PRO224 GLN225 GLY226 GLN227 THR228 ALA229 LYS230 ILE231 GLU232 VAL233 PRO234 HIS235 THR236 HIS237 ASN238 LEU239 LEU240 GLY241 GLN242 GLN243 PRO244 LEU245 VAL246 SER247 LEU248 GLY249 GLY250 ASN251 GLU252 LEU253 ARG254 LEU255 ALA256 SER257 ALA258 LYS259 GLU260 PHE261 PRO262 GLY263 SER264 PHE265 ASN266 MET267 THR268 GLY269 ALA270 LEU271 ILE272 HIS273 LEU274 GLU275 PRO276 GLY277 ALA278 MET279 ARG280 GLN281 LEU282 HIS283 TRP284 HIS285 PRO286 ASN287 ALA288 ASP289 GLU290 TRP291 GLN292 TYR293 VAL294 LEU295 ASP296 GLY297 GLU298 MET299 ASP300 LEU301 THR302 VAL303 PHE304 ALA305 SER306 GLU307 GLY308 LYS309 ALA310 SER311 VAL312 SER313 ARG314 LEU315 GLN316 GLN317 GLY318 ASP319 VAL320 GLY321 TYR322 VAL323 PRO324 LYS325 GLY326 TYR327 GLY328 HIS329 ALA330 ILE331 ARG332 ASN333 SER334 SER335 GLN336 LYS337 PRO338 LEU339 ASP340 ILE341 VAL342 VAL343 VAL344 PHE345 ASN346 ASP347 GLY348 ASP349 TYR350 GLN351 SER352 ILE353 ASP354 LEU355 SER356 THR357 TRP358 LEU359 ALA360 SER361 ASN362 PRO363 SER364 SER365 VAL366 LEU367 GLY368 ASN369 THR370 PHE371 GLN372 ILE373 SER374 PRO375 GLU376 LEU377 THR378 LYS379 LYS380 LEU381 PRO382 VAL383 GLN384 ASP385 THR386 ILE387 PHE388 SER389 LEU390 PRO391 THR392 GLN393 PRO394
Unit 3 TRP39 ARG40 SER41 LEU42 SER43 ASN44 VAL45 VAL46 TRP47 GLY48 LYS49 ASP50 LEU51 PRO52 ALA53 PHE54 THR55 TYR56 ALA57 PHE58 SER59 LYS60 THR61 PRO62 LEU63 VAL64 LEU65 TYR66 ASP67 GLY68 GLY69 THR70 THR71 LYS72 GLN73 VAL74 GLY75 THR76 TYR77 ASN78 PHE79 PRO80 VAL81 SER82 LYS83 GLY84 MET85 ALA86 GLY87 VAL88 TYR89 MET90 SER91 LEU92 GLU93 PRO94 GLY95 ALA96 ILE97 ARG98 GLU99 LEU100 HIS101 TRP102 HIS103 ALA104 ASN105 ALA106 ALA107 GLU108 TRP109 ALA110 TYR111 VAL112 MET113 GLU114 GLY115 ARG116 THR117 ARG118 ILE119 THR120 LEU121 THR122 SER123 PRO124 GLU125 GLY126 LYS127 VAL128 GLU129 ILE130 ALA131 ASP132 VAL133 ASP134 LYS135 GLY136 GLY137 LEU138 TRP139 TYR140 PHE141 PRO142 ARG143 GLY144 TRP145 GLY146 HIS147 SER148 ILE149 GLU150 GLY151 ILE152 GLY153 PRO154 ASP155 THR156 ALA157 LYS158 PHE159 LEU160 LEU161 VAL162 PHE163 ASN164 ASP165 GLY166 THR167 PHE168 SER169 GLU170 GLY171 ALA172 THR173 PHE174 SER175 VAL176 THR177 ASP178 TRP179 LEU180 SER181 HIS182 THR183 PRO184 ILE185 ALA186 TRP187 VAL188 GLU189 GLU190 ASN191 LEU192 GLY193 TRP194 THR195 ALA196 ALA197 GLN198 VAL199 ALA200 GLN201 LEU202 PRO203 LYS204 LYS205 GLN206 VAL207 TYR208 ILE209 SER210 SER211 TYR212 GLY213 PRO214 ALA215 SER216 GLY217 PRO218 LEU219 ALA220 SER221 ALA222 THR223 PRO224 GLN225 GLY226 GLN227 THR228 ALA229 LYS230 ILE231 GLU232 VAL233 PRO234 HIS235 THR236 HIS237 ASN238 LEU239 LEU240 GLY241 GLN242 GLN243 PRO244 LEU245 VAL246 SER247 LEU248 GLY249 GLY250 ASN251 GLU252 LEU253 ARG254 LEU255 ALA256 SER257 ALA258 LYS259 GLU260 PHE261 PRO262 GLY263 SER264 PHE265 ASN266 MET267 THR268 GLY269 ALA270 LEU271 ILE272 HIS273 LEU274 GLU275 PRO276 GLY277 ALA278 MET279 ARG280 GLN281 LEU282 HIS283 TRP284 HIS285 PRO286 ASN287 ALA288 ASP289 GLU290 TRP291 GLN292 TYR293 VAL294 LEU295 ASP296 GLY297 GLU298 MET299 ASP300 LEU301 THR302 VAL303 PHE304 ALA305 SER306 GLU307 GLY308 LYS309 ALA310 SER311 VAL312 SER313 ARG314 LEU315 GLN316 GLN317 GLY318 ASP319 VAL320 GLY321 TYR322 VAL323 PRO324 LYS325 GLY326 TYR327 GLY328 HIS329 ALA330 ILE331 ARG332 ASN333 SER334 SER335 GLN336 LYS337 PRO338 LEU339 ASP340 ILE341 VAL342 VAL343 VAL344 PHE345 ASN346 ASP347 GLY348 ASP349 TYR350 GLN351 SER352 ILE353 ASP354 LEU355 SER356 THR357 TRP358 LEU359 ALA360 SER361 ASN362 PRO363 SER364 SER365 VAL366 LEU367 GLY368 ASN369 THR370 PHE371 GLN372 ILE373 SER374 PRO375 GLU376 LEU377 THR378 LYS379 LYS380 LEU381 PRO382 VAL383 GLN384 ASP385 THR386 ILE387 PHE388 SER389 LEU390 PRO391 THR392
Ligands
Unit 4 MN1005 MN1006 ACT1395 ACT1396
Unit 5 MN1001 MN1002 ACT1395 ACT1396 ACT1397
Unit 6 MN1003 MN1004 ACT1393 ACT1394 ACT1395
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany