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Title | THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNA | |
Keywords | RIBOSOMAL PROTEIN, RNA-PROTEIN COMPLEX, TRANSLATION REGULATI TRANSLATION, REPRESSOR, RNA-BINDING, TRNA-BINDING, RRNA-BIN | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2VPL | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | 50S RIBOSOMAL PROTEIN L1 | A | 137 | 1070 | 0 |
2 | RNA | B | 48 | 1031 | 0 | |
3 | Protein | 50S RIBOSOMAL PROTEIN L1 | C | 137 | 1070 | 0 |
4 | RNA | D | 46 | 989 | 0 | |
5 | Ligand | 50S RIBOSOMAL PROTEIN L1 | A | 1 | 0 | 1 |
6 | Ligand | 50S RIBOSOMAL PROTEIN L1 | C | 1 | 0 | 1 |
7 | Water | 318 | 0 | 318 | ||
total | 688 | 4160 | 320 |
Unit 1 | PRO1 LYS2 HIS3 GLY4 LYS5 ARG6 TYR7 ARG8 ALA9 LEU10 LEU11 GLU12 LYS13 VAL14 ASP15 PRO16 ASN17 LYS18 ILE19 TYR20 THR21 ILE22 ASP23 GLU24 ALA25 ALA26 HIS27 LEU28 VAL29 LYS30 GLU31 LEU32 ALA33 THR34 ALA35 LYS36 PHE37 ASP38 GLU39 THR40 VAL41 GLU42 VAL43 HIS44 ALA45 LYS46 LEU47 GLY48 ILE49 ASP50 PRO51 ARG52 ARG53 SER54 ASP55 GLN56 ASN57 VAL58 ARG59 GLY60 THR61 VAL62 SER63 LEU64 PRO65 HIS66 GLY67 GLY159 ARG160 ILE161 GLU162 PHE163 ARG164 ASN165 ASP166 LYS167 THR168 GLY169 ALA170 ILE171 HIS172 ALA173 PRO174 VAL175 GLY176 LYS177 ALA178 SER179 PHE180 PRO181 PRO182 GLU183 LYS184 LEU185 ALA186 ASP187 ASN188 ILE189 ARG190 ALA191 PHE192 ILE193 ARG194 ALA195 LEU196 GLU197 ALA198 HIS199 LYS200 PRO201 GLU202 GLY203 ALA204 LYS205 GLY206 THR207 PHE208 LEU209 ARG210 SER211 VAL212 TYR213 VAL214 THR215 THR216 THR217 MET218 GLY219 PRO220 SER221 VAL222 ARG223 ILE224 ASN225 PRO226 HIS227 SER228 |
Unit 3 | PRO1 LYS2 HIS3 GLY4 LYS5 ARG6 TYR7 ARG8 ALA9 LEU10 LEU11 GLU12 LYS13 VAL14 ASP15 PRO16 ASN17 LYS18 ILE19 TYR20 THR21 ILE22 ASP23 GLU24 ALA25 ALA26 HIS27 LEU28 VAL29 LYS30 GLU31 LEU32 ALA33 THR34 ALA35 LYS36 PHE37 ASP38 GLU39 THR40 VAL41 GLU42 VAL43 HIS44 ALA45 LYS46 LEU47 GLY48 ILE49 ASP50 PRO51 ARG52 ARG53 SER54 ASP55 GLN56 ASN57 VAL58 ARG59 GLY60 THR61 VAL62 SER63 LEU64 PRO65 HIS66 GLY67 GLY159 ARG160 ILE161 GLU162 PHE163 ARG164 ASN165 ASP166 LYS167 THR168 GLY169 ALA170 ILE171 HIS172 ALA173 PRO174 VAL175 GLY176 LYS177 ALA178 SER179 PHE180 PRO181 PRO182 GLU183 LYS184 LEU185 ALA186 ASP187 ASN188 ILE189 ARG190 ALA191 PHE192 ILE193 ARG194 ALA195 LEU196 GLU197 ALA198 HIS199 LYS200 PRO201 GLU202 GLY203 ALA204 LYS205 GLY206 THR207 PHE208 LEU209 ARG210 SER211 VAL212 TYR213 VAL214 THR215 THR216 THR217 MET218 GLY219 PRO220 SER221 VAL222 ARG223 ILE224 ASN225 PRO226 HIS227 SER228 |
Unit 2 | G2 G3 A4 G5 U6 G7 A8 A9 G10 G11 A12 G13 G14 C15 U16 C17 G18 C19 G20 A21 A22 C23 U24 C25 G26 C27 G28 A29 A30 G31 C32 C33 G34 A35 G36 A37 A38 A39 C40 U41 U42 C43 A44 C45 U46 C47 C48 C49 |
Unit 4 | G2 G3 A4 G5 U6 G7 A8 A9 G10 G11 A12 G13 G14 C15 U16 C17 G18 C19 G20 A21 U24 C25 G26 C27 G28 A29 A30 G31 C32 C33 G34 A35 G36 A37 A38 A39 C40 U41 U42 C43 A44 C45 U46 C47 C48 C49 |
Unit 5 | K1229 |
Unit 6 | K1229 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |