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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SC RRP44
Keywords HYDROLASE-RNA COMPLEX, RNA DEGRADATION, RNA-BINDING, RNA PRO
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2VNU     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA    B 10 199 0
2  Protein   EXOSOME COMPLEX EXONUCLEASE RRP44  D 694 5236 144
3  Ligand   EXOSOME COMPLEX EXONUCLEASE RRP44  D 3 0 18
4 Water     450 0 450
total       1157 5435 612

Proteins
Unit 2 ASP252 PHE253 THR254 PHE255 PRO256 GLU257 TYR258 TYR259 SER260 THR261 ALA262 ARG263 VAL264 MSE265 GLY266 GLY267 LEU268 LYS269 ASN270 GLY271 VAL272 LEU273 TYR274 GLN275 GLY276 ASN277 ILE278 GLN279 ILE280 SER281 GLU282 TYR283 ASN284 PHE285 LEU286 GLU287 GLY288 SER289 VAL290 SER291 LEU292 PRO293 ARG294 PHE295 SER296 LYS297 PRO298 VAL299 LEU300 ILE301 VAL302 GLY303 GLN304 LYS305 ASN306 LEU307 ASN308 ARG309 ALA310 PHE311 ASN312 GLY313 ASP314 GLN315 VAL316 ILE317 VAL318 GLU319 LEU320 LEU321 PRO322 GLN323 SER324 GLU325 TRP326 LYS327 ALA328 PRO329 SER330 SER331 ILE332 VAL333 LEU334 ASP335 SER336 GLU337 HIS338 PHE339 ASP340 ILE386 GLN387 PRO388 THR389 ALA390 LYS391 VAL392 VAL393 TYR394 ILE395 GLN396 ARG397 ARG398 SER399 TRP400 ARG401 GLN402 TYR403 VAL404 GLY405 GLN406 LEU407 ALA408 PRO409 SER410 SER411 VAL412 ASP413 PRO414 GLN415 SER416 SER417 SER418 THR419 GLN420 ASN421 VAL422 PHE423 VAL424 ILE425 LEU426 MSE427 ASP428 LYS429 CYS430 LEU431 PRO432 LYS433 VAL434 ARG435 ILE436 ARG437 THR438 ARG439 ARG440 ALA441 ALA442 GLU443 LEU444 LEU445 ASP446 LYS447 ARG448 ILE449 VAL450 ILE451 SER452 ILE453 ASP454 SER455 TRP456 PRO457 THR458 THR459 HIS460 LYS461 TYR462 PRO463 LEU464 GLY465 HIS466 PHE467 VAL468 ARG469 ASP470 LEU471 GLY472 THR473 ILE474 GLU475 SER476 ALA477 GLN478 ALA479 GLU480 THR481 GLU482 ALA483 LEU484 LEU485 LEU486 GLU487 HIS488 ASP489 VAL490 GLU491 TYR492 ARG493 PRO494 PHE495 SER496 LYS497 LYS498 VAL499 LEU500 GLU501 CYS502 LEU503 PRO504 ALA505 GLU506 GLY507 HIS508 ASP509 TRP510 LYS511 ALA512 PRO513 THR514 LYS515 LEU516 ASP517 ASP518 PRO519 GLU520 ALA521 VAL522 SER523 LYS524 ASP525 PRO526 LEU527 LEU528 THR529 LYS530 ARG531 LYS532 ASP533 LEU534 ARG535 ASP536 LYS537 LEU538 ILE539 CYS540 SER541 ILE542 ASP543 PRO544 PRO545 GLY546 CYS547 VAL548 ASP549 ILE550 ASN551 ASP552 ALA553 LEU554 HIS555 ALA556 LYS557 LYS558 LEU559 PRO560 ASN561 GLY562 ASN563 TRP564 GLU565 VAL566 GLY567 VAL568 HIS569 ILE570 ALA571 ASP572 VAL573 THR574 HIS575 PHE576 VAL577 LYS578 PRO579 GLY580 THR581 ALA582 LEU583 ASP584 ALA585 GLU586 GLY587 ALA588 ALA589 ARG590 GLY591 THR592 SER593 VAL594 TYR595 LEU596 VAL597 ASP598 LYS599 ARG600 ILE601 ASP602 MSE603 LEU604 PRO605 MSE606 LEU607 LEU608 GLY609 THR610 ASP611 LEU612 CYS613 SER614 LEU615 LYS616 PRO617 TYR618 VAL619 ASP620 ARG621 PHE622 ALA623 PHE624 SER625 VAL626 ILE627 TRP628 GLU629 LEU630 ASP631 ASP632 SER633 ALA634 ASN635 ILE636 VAL637 ASN638 VAL639 ASN640 PHE641 MSE642 LYS643 SER644 VAL645 ILE646 ARG647 SER648 ARG649 GLU650 ALA651 PHE652 SER653 TYR654 GLU655 GLN656 ALA657 GLN658 LEU659 ARG660 ILE661 ASP662 ASP663 LYS664 THR665 GLN666 ASN667 ASP668 GLU669 LEU670 THR671 MSE672 GLY673 MSE674 ARG675 ALA676 LEU677 LEU678 LYS679 LEU680 SER681 VAL682 LYS683 LEU684 LYS685 GLN686 LYS687 ARG688 LEU689 GLU690 ALA691 GLY692 ALA693 LEU694 ASN695 LEU696 ALA697 SER698 PRO699 GLU700 VAL701 LYS702 VAL703 HIS704 MSE705 ASP706 SER707 GLU708 THR709 SER710 ASP711 PRO712 ASN713 GLU714 VAL715 GLU716 ILE717 LYS718 LYS719 LEU720 LEU721 ALA722 THR723 ASN724 SER725 LEU726 VAL727 GLU728 GLU729 PHE730 MSE731 LEU732 LEU733 ALA734 ASN735 ILE736 SER737 VAL738 ALA739 ARG740 LYS741 ILE742 TYR743 ASP744 ALA745 PHE746 PRO747 GLN748 THR749 ALA750 MSE751 LEU752 ARG753 ARG754 HIS755 ALA756 ALA757 PRO758 PRO759 SER760 THR761 ASN762 PHE763 GLU764 ILE765 LEU766 ASN767 GLU768 MSE769 LEU770 ASN771 THR772 ARG773 LYS774 ASN775 MSE776 SER777 ILE778 SER779 LEU780 GLU781 SER782 SER783 LYS784 ALA785 LEU786 ALA787 ASP788 SER789 LEU790 ASP791 ARG792 CYS793 VAL794 ASP795 PRO796 GLU797 ASP798 PRO799 TYR800 PHE801 ASN802 THR803 LEU804 VAL805 ARG806 ILE807 MSE808 SER809 THR810 ARG811 CYS812 MSE813 MSE814 ALA815 ALA816 GLN817 TYR818 PHE819 TYR820 SER821 GLY822 ALA823 TYR824 SER825 TYR826 PRO827 ASP828 PHE829 ARG830 HIS831 TYR832 GLY833 LEU834 ALA835 VAL836 ASP837 ILE838 TYR839 THR840 HIS841 PHE842 THR843 SER844 PRO845 ILE846 ARG847 ARG848 TYR849 CYS850 ASP851 VAL852 VAL853 ALA854 HIS855 ARG856 GLN857 LEU858 ALA859 GLY860 ALA861 ILE862 GLY863 TYR864 GLU865 PRO866 LEU867 SER868 LEU869 THR870 HIS871 ARG872 ASP873 LYS874 ASN875 LYS876 MSE877 ASP878 MSE879 ILE880 CYS881 ARG882 ASN883 ILE884 ASN885 ARG886 LYS887 HIS888 ARG889 ASN890 ALA891 GLN892 PHE893 ALA894 GLY895 ARG896 ALA897 SER898 ILE899 GLU900 TYR901 TYR902 VAL903 GLY904 GLN905 VAL906 MSE907 ARG908 ASN909 ASN910 GLU911 SER912 THR913 GLU914 THR915 GLY916 TYR917 VAL918 ILE919 LYS920 VAL921 PHE922 ASN923 ASN924 GLY925 ILE926 VAL927 VAL928 LEU929 VAL930 PRO931 LYS932 PHE933 GLY934 VAL935 GLU936 GLY937 LEU938 ILE939 ARG940 LEU941 ASP942 ASN943 LEU944 THR945 GLU946 ASP947 PRO948 ASN949 SER950 ALA951 ALA952 PHE953 ASP954 GLU955 VAL956 GLU957 TYR958 LYS959 LEU960 THR961 PHE962 VAL963 PRO964 THR965 ASN966 SER967 ASP968 LYS969 PRO970 ARG971 ASP972 VAL973 TYR974 VAL975 PHE976 ASP977 LYS978 VAL979 GLU980 VAL981 GLN982 VAL983 ARG984 LYS993 ARG994 LYS995 ALA996 GLU997 LEU998

Nucleic acids
Unit 1 A-10 A-9 A-8 A-7 A-6 A-5 A-4 A-3 A-2 A-1

Ligands
Unit 3 MG1500 NA1501 1PE1502

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany