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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE WILD-TYPE DISCOIDIN II FROM DICTYOSTELIUM DISCOIDEUM
Keywords LECTIN, AGGREGATION, DDR, CELL ADHESION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2VME     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DISCOIDIN-2  A 257 2003 14
2  Protein   DISCOIDIN-2  B 257 2003 14
3  Protein   DISCOIDIN-2  C 256 1994 14
4  Protein   DISCOIDIN-2  D 257 2003 14
5  Protein   DISCOIDIN-2  E 257 2003 14
6  Protein   DISCOIDIN-2  F 256 1994 14
7  Ligand   DISCOIDIN-2  A 5 0 15
8  Ligand   DISCOIDIN-2  B 4 0 19
9  Ligand   DISCOIDIN-2  C 4 0 26
10  Ligand   DISCOIDIN-2  D 5 0 15
11  Ligand   DISCOIDIN-2  E 4 0 19
12  Ligand   DISCOIDIN-2  F 4 0 19
13 Water     543 0 543
total       2109 12000 740
Proteins
Unit 1 MET1 SER2 VAL3 PRO4 ALA5 GLY6 SER7 VAL8 SER9 CYS10 LEU11 ALA12 ASN13 ALA14 LEU15 LEU16 ASN17 LEU18 ARG19 SER20 SER21 THR22 ASP23 TYR24 ASN25 ALA26 ASP27 HIS28 GLY29 VAL30 LYS31 ASN32 SER33 ILE34 LEU35 ASN36 PHE37 SER38 ASN39 SER40 LYS41 ASP42 ALA43 SER44 ARG45 PHE46 ASP47 GLY48 SER49 GLU50 SER51 TRP52 SER53 SER54 SER55 VAL56 LEU57 ASP58 LYS59 ASN60 GLN61 PHE62 ILE63 VAL64 ALA65 GLY66 SER67 ASP68 SER69 VAL70 LYS71 HIS72 PHE73 VAL74 ALA75 ILE76 SER77 THR78 GLN79 GLY80 ARG81 GLY82 ASP83 HIP84 ASP85 GLN86 TRP87 VAL88 THR89 SER90 TYR91 LYS92 LEU93 ARG94 TYR95 THR96 LEU97 ASP98 ASN99 VAL100 ASN101 TRP102 VAL103 GLU104 TYR105 ASN106 ASN107 GLY108 GLU109 ILE110 ILE111 ASN112 ALA113 ASN114 LYS115 ASP116 ARG117 ASN118 SER119 ILE120 VAL121 THR122 ILE123 ASN124 PHE125 ASN126 PRO127 PRO128 ILE129 LYS130 ALA131 ARG132 SER133 ILE134 ALA135 ILE136 HIS137 PRO138 GLN139 THR140 TYR141 ASN142 ASN143 HIS144 ILE145 SER146 LEU147 ARG148 TRP149 GLU150 LEU151 TYR152 ALA153 LEU154 PRO155 VAL156 LYS157 SER158 TYR159 SER160 ASN161 PRO162 SER163 VAL164 GLN165 VAL166 GLY167 GLU168 VAL169 SER170 ILE171 GLY172 ASP173 ARG174 SER175 LEU176 ASN177 SER178 GLY179 THR180 GLY181 SER182 ARG183 THR184 ILE185 VAL186 ARG187 HIS188 VAL189 LYS190 PHE191 PRO192 VAL193 GLU194 PHE195 LEU196 SER197 VAL198 PRO199 ILE200 VAL201 SER202 ILE203 GLY204 CYS205 LYS206 LYS207 VAL208 ASP209 ALA210 HIS211 THR212 ASP213 ASN214 GLY215 GLN216 MET217 ARG218 TRP219 GLU220 GLY221 LYS222 SER223 GLU224 ASN225 ILE226 THR227 THR228 LYS229 GLY230 PHE231 ASP232 LEU233 THR234 PHE235 ILE236 THR237 TRP238 GLY239 ASN240 ASN241 ALA242 VAL243 TYR244 ASP245 LEU246 THR247 PHE248 ASP249 TYR250 VAL251 ALA252 VAL253 GLU254 PHE255 ASN256 ASN257
Unit 2 MET1 SER2 VAL3 PRO4 ALA5 GLY6 SER7 VAL8 SER9 CYS10 LEU11 ALA12 ASN13 ALA14 LEU15 LEU16 ASN17 LEU18 ARG19 SER20 SER21 THR22 ASP23 TYR24 ASN25 ALA26 ASP27 HIS28 GLY29 VAL30 LYS31 ASN32 SER33 ILE34 LEU35 ASN36 PHE37 SER38 ASN39 SER40 LYS41 ASP42 ALA43 SER44 ARG45 PHE46 ASP47 GLY48 SER49 GLU50 SER51 TRP52 SER53 SER54 SER55 VAL56 LEU57 ASP58 LYS59 ASN60 GLN61 PHE62 ILE63 VAL64 ALA65 GLY66 SER67 ASP68 SER69 VAL70 LYS71 HIS72 PHE73 VAL74 ALA75 ILE76 SER77 THR78 GLN79 GLY80 ARG81 GLY82 ASP83 HIP84 ASP85 GLN86 TRP87 VAL88 THR89 SER90 TYR91 LYS92 LEU93 ARG94 TYR95 THR96 LEU97 ASP98 ASN99 VAL100 ASN101 TRP102 VAL103 GLU104 TYR105 ASN106 ASN107 GLY108 GLU109 ILE110 ILE111 ASN112 ALA113 ASN114 LYS115 ASP116 ARG117 ASN118 SER119 ILE120 VAL121 THR122 ILE123 ASN124 PHE125 ASN126 PRO127 PRO128 ILE129 LYS130 ALA131 ARG132 SER133 ILE134 ALA135 ILE136 HIS137 PRO138 GLN139 THR140 TYR141 ASN142 ASN143 HIS144 ILE145 SER146 LEU147 ARG148 TRP149 GLU150 LEU151 TYR152 ALA153 LEU154 PRO155 VAL156 LYS157 SER158 TYR159 SER160 ASN161 PRO162 SER163 VAL164 GLN165 VAL166 GLY167 GLU168 VAL169 SER170 ILE171 GLY172 ASP173 ARG174 SER175 LEU176 ASN177 SER178 GLY179 THR180 GLY181 SER182 ARG183 THR184 ILE185 VAL186 ARG187 HIS188 VAL189 LYS190 PHE191 PRO192 VAL193 GLU194 PHE195 LEU196 SER197 VAL198 PRO199 ILE200 VAL201 SER202 ILE203 GLY204 CYS205 LYS206 LYS207 VAL208 ASP209 ALA210 HIS211 THR212 ASP213 ASN214 GLY215 GLN216 MET217 ARG218 TRP219 GLU220 GLY221 LYS222 SER223 GLU224 ASN225 ILE226 THR227 THR228 LYS229 GLY230 PHE231 ASP232 LEU233 THR234 PHE235 ILE236 THR237 TRP238 GLY239 ASN240 ASN241 ALA242 VAL243 TYR244 ASP245 LEU246 THR247 PHE248 ASP249 TYR250 VAL251 ALA252 VAL253 GLU254 PHE255 ASN256 ASN257
Unit 3 MET1 SER2 VAL3 PRO4 ALA5 GLY6 SER7 VAL8 SER9 CYS10 LEU11 ALA12 ASN13 ALA14 LEU15 LEU16 ASN17 LEU18 ARG19 SER20 SER21 THR22 ASP23 TYR24 ASN25 ALA26 ASP27 HIS28 GLY29 VAL30 LYS31 ASN32 SER33 ILE34 LEU35 ASN36 PHE37 SER38 ASN39 SER40 LYS41 ASP42 ALA43 SER44 ARG45 PHE46 ASP47 GLY48 SER49 GLU50 SER51 TRP52 SER53 SER54 SER55 VAL56 LEU57 ASP58 LYS59 ASN60 GLN61 PHE62 ILE63 VAL64 ALA65 GLY66 SER67 ASP68 SER69 VAL70 LYS71 HIS72 PHE73 VAL74 ALA75 ILE76 SER77 THR78 GLN79 GLY80 ARG81 GLY82 ASP83 HIP84 ASP85 GLN86 TRP87 VAL88 THR89 SER90 TYR91 LYS92 LEU93 ARG94 TYR95 THR96 LEU97 ASP98 ASN99 VAL100 ASN101 TRP102 VAL103 GLU104 TYR105 ASN106 ASN107 GLY108 GLU109 ILE110 ILE111 ASN112 ALA113 ASN114 LYS115 ASP116 ARG117 ASN118 SER119 ILE120 VAL121 THR122 ILE123 ASN124 PHE125 ASN126 PRO127 PRO128 ILE129 LYS130 ALA131 ARG132 SER133 ILE134 ALA135 ILE136 HIS137 PRO138 GLN139 THR140 TYR141 ASN142 ASN143 HIS144 ILE145 SER146 LEU147 ARG148 TRP149 GLU150 LEU151 TYR152 ALA153 LEU154 PRO155 VAL156 LYS157 SER158 TYR159 SER160 ASN161 PRO162 SER163 VAL164 GLN165 VAL166 GLY167 GLU168 VAL169 SER170 ILE171 GLY172 ASP173 ARG174 SER175 LEU176 ASN177 SER178 GLY179 THR180 GLY181 SER182 ARG183 THR184 ILE185 VAL186 ARG187 HIS188 VAL189 LYS190 PHE191 PRO192 VAL193 GLU194 PHE195 LEU196 SER197 VAL198 PRO199 ILE200 VAL201 SER202 ILE203 GLY204 CYS205 LYS206 LYS207 VAL208 ASP209 ALA210 HIS211 THR212 ASP213 ASN214 GLY215 GLN216 MET217 ARG218 TRP219 GLU220 GLY221 LYS222 SER223 GLU224 ASN225 ILE226 THR227 THR228 LYS229 GLY230 PHE231 ASP232 LEU233 THR234 PHE235 ILE236 THR237 TRP238 GLY239 ASN240 ASN241 ALA242 VAL243 TYR244 ASP245 LEU246 THR247 PHE248 ASP249 TYR250 VAL251 ALA252 VAL253 GLU254 PHE255 ASN256
Unit 4 MET1 SER2 VAL3 PRO4 ALA5 GLY6 SER7 VAL8 SER9 CYS10 LEU11 ALA12 ASN13 ALA14 LEU15 LEU16 ASN17 LEU18 ARG19 SER20 SER21 THR22 ASP23 TYR24 ASN25 ALA26 ASP27 HIS28 GLY29 VAL30 LYS31 ASN32 SER33 ILE34 LEU35 ASN36 PHE37 SER38 ASN39 SER40 LYS41 ASP42 ALA43 SER44 ARG45 PHE46 ASP47 GLY48 SER49 GLU50 SER51 TRP52 SER53 SER54 SER55 VAL56 LEU57 ASP58 LYS59 ASN60 GLN61 PHE62 ILE63 VAL64 ALA65 GLY66 SER67 ASP68 SER69 VAL70 LYS71 HIS72 PHE73 VAL74 ALA75 ILE76 SER77 THR78 GLN79 GLY80 ARG81 GLY82 ASP83 HIP84 ASP85 GLN86 TRP87 VAL88 THR89 SER90 TYR91 LYS92 LEU93 ARG94 TYR95 THR96 LEU97 ASP98 ASN99 VAL100 ASN101 TRP102 VAL103 GLU104 TYR105 ASN106 ASN107 GLY108 GLU109 ILE110 ILE111 ASN112 ALA113 ASN114 LYS115 ASP116 ARG117 ASN118 SER119 ILE120 VAL121 THR122 ILE123 ASN124 PHE125 ASN126 PRO127 PRO128 ILE129 LYS130 ALA131 ARG132 SER133 ILE134 ALA135 ILE136 HIS137 PRO138 GLN139 THR140 TYR141 ASN142 ASN143 HIS144 ILE145 SER146 LEU147 ARG148 TRP149 GLU150 LEU151 TYR152 ALA153 LEU154 PRO155 VAL156 LYS157 SER158 TYR159 SER160 ASN161 PRO162 SER163 VAL164 GLN165 VAL166 GLY167 GLU168 VAL169 SER170 ILE171 GLY172 ASP173 ARG174 SER175 LEU176 ASN177 SER178 GLY179 THR180 GLY181 SER182 ARG183 THR184 ILE185 VAL186 ARG187 HIS188 VAL189 LYS190 PHE191 PRO192 VAL193 GLU194 PHE195 LEU196 SER197 VAL198 PRO199 ILE200 VAL201 SER202 ILE203 GLY204 CYS205 LYS206 LYS207 VAL208 ASP209 ALA210 HIS211 THR212 ASP213 ASN214 GLY215 GLN216 MET217 ARG218 TRP219 GLU220 GLY221 LYS222 SER223 GLU224 ASN225 ILE226 THR227 THR228 LYS229 GLY230 PHE231 ASP232 LEU233 THR234 PHE235 ILE236 THR237 TRP238 GLY239 ASN240 ASN241 ALA242 VAL243 TYR244 ASP245 LEU246 THR247 PHE248 ASP249 TYR250 VAL251 ALA252 VAL253 GLU254 PHE255 ASN256 ASN257
Unit 5 MET1 SER2 VAL3 PRO4 ALA5 GLY6 SER7 VAL8 SER9 CYS10 LEU11 ALA12 ASN13 ALA14 LEU15 LEU16 ASN17 LEU18 ARG19 SER20 SER21 THR22 ASP23 TYR24 ASN25 ALA26 ASP27 HIS28 GLY29 VAL30 LYS31 ASN32 SER33 ILE34 LEU35 ASN36 PHE37 SER38 ASN39 SER40 LYS41 ASP42 ALA43 SER44 ARG45 PHE46 ASP47 GLY48 SER49 GLU50 SER51 TRP52 SER53 SER54 SER55 VAL56 LEU57 ASP58 LYS59 ASN60 GLN61 PHE62 ILE63 VAL64 ALA65 GLY66 SER67 ASP68 SER69 VAL70 LYS71 HIS72 PHE73 VAL74 ALA75 ILE76 SER77 THR78 GLN79 GLY80 ARG81 GLY82 ASP83 HIP84 ASP85 GLN86 TRP87 VAL88 THR89 SER90 TYR91 LYS92 LEU93 ARG94 TYR95 THR96 LEU97 ASP98 ASN99 VAL100 ASN101 TRP102 VAL103 GLU104 TYR105 ASN106 ASN107 GLY108 GLU109 ILE110 ILE111 ASN112 ALA113 ASN114 LYS115 ASP116 ARG117 ASN118 SER119 ILE120 VAL121 THR122 ILE123 ASN124 PHE125 ASN126 PRO127 PRO128 ILE129 LYS130 ALA131 ARG132 SER133 ILE134 ALA135 ILE136 HIS137 PRO138 GLN139 THR140 TYR141 ASN142 ASN143 HIS144 ILE145 SER146 LEU147 ARG148 TRP149 GLU150 LEU151 TYR152 ALA153 LEU154 PRO155 VAL156 LYS157 SER158 TYR159 SER160 ASN161 PRO162 SER163 VAL164 GLN165 VAL166 GLY167 GLU168 VAL169 SER170 ILE171 GLY172 ASP173 ARG174 SER175 LEU176 ASN177 SER178 GLY179 THR180 GLY181 SER182 ARG183 THR184 ILE185 VAL186 ARG187 HIS188 VAL189 LYS190 PHE191 PRO192 VAL193 GLU194 PHE195 LEU196 SER197 VAL198 PRO199 ILE200 VAL201 SER202 ILE203 GLY204 CYS205 LYS206 LYS207 VAL208 ASP209 ALA210 HIS211 THR212 ASP213 ASN214 GLY215 GLN216 MET217 ARG218 TRP219 GLU220 GLY221 LYS222 SER223 GLU224 ASN225 ILE226 THR227 THR228 LYS229 GLY230 PHE231 ASP232 LEU233 THR234 PHE235 ILE236 THR237 TRP238 GLY239 ASN240 ASN241 ALA242 VAL243 TYR244 ASP245 LEU246 THR247 PHE248 ASP249 TYR250 VAL251 ALA252 VAL253 GLU254 PHE255 ASN256 ASN257
Unit 6 MET1 SER2 VAL3 PRO4 ALA5 GLY6 SER7 VAL8 SER9 CYS10 LEU11 ALA12 ASN13 ALA14 LEU15 LEU16 ASN17 LEU18 ARG19 SER20 SER21 THR22 ASP23 TYR24 ASN25 ALA26 ASP27 HIS28 GLY29 VAL30 LYS31 ASN32 SER33 ILE34 LEU35 ASN36 PHE37 SER38 ASN39 SER40 LYS41 ASP42 ALA43 SER44 ARG45 PHE46 ASP47 GLY48 SER49 GLU50 SER51 TRP52 SER53 SER54 SER55 VAL56 LEU57 ASP58 LYS59 ASN60 GLN61 PHE62 ILE63 VAL64 ALA65 GLY66 SER67 ASP68 SER69 VAL70 LYS71 HIS72 PHE73 VAL74 ALA75 ILE76 SER77 THR78 GLN79 GLY80 ARG81 GLY82 ASP83 HIP84 ASP85 GLN86 TRP87 VAL88 THR89 SER90 TYR91 LYS92 LEU93 ARG94 TYR95 THR96 LEU97 ASP98 ASN99 VAL100 ASN101 TRP102 VAL103 GLU104 TYR105 ASN106 ASN107 GLY108 GLU109 ILE110 ILE111 ASN112 ALA113 ASN114 LYS115 ASP116 ARG117 ASN118 SER119 ILE120 VAL121 THR122 ILE123 ASN124 PHE125 ASN126 PRO127 PRO128 ILE129 LYS130 ALA131 ARG132 SER133 ILE134 ALA135 ILE136 HIS137 PRO138 GLN139 THR140 TYR141 ASN142 ASN143 HIS144 ILE145 SER146 LEU147 ARG148 TRP149 GLU150 LEU151 TYR152 ALA153 LEU154 PRO155 VAL156 LYS157 SER158 TYR159 SER160 ASN161 PRO162 SER163 VAL164 GLN165 VAL166 GLY167 GLU168 VAL169 SER170 ILE171 GLY172 ASP173 ARG174 SER175 LEU176 ASN177 SER178 GLY179 THR180 GLY181 SER182 ARG183 THR184 ILE185 VAL186 ARG187 HIS188 VAL189 LYS190 PHE191 PRO192 VAL193 GLU194 PHE195 LEU196 SER197 VAL198 PRO199 ILE200 VAL201 SER202 ILE203 GLY204 CYS205 LYS206 LYS207 VAL208 ASP209 ALA210 HIS211 THR212 ASP213 ASN214 GLY215 GLN216 MET217 ARG218 TRP219 GLU220 GLY221 LYS222 SER223 GLU224 ASN225 ILE226 THR227 THR228 LYS229 GLY230 PHE231 ASP232 LEU233 THR234 PHE235 ILE236 THR237 TRP238 GLY239 ASN240 ASN241 ALA242 VAL243 TYR244 ASP245 LEU246 THR247 PHE248 ASP249 TYR250 VAL251 ALA252 VAL253 GLU254 PHE255 ASN256
Ligands
Unit 7 CA500 ZN501 CL502 GOL503 GOL504
Unit 8 CA500 GOL503 GOL504 GOL506
Unit 9 CA500 GOL504 PG4505 GOL506
Unit 10 CA500 ZN501 CL502 GOL504 GOL506
Unit 11 CA500 GOL504 GOL506 GOL507
Unit 12 CA500 GOL503 GOL504 GOL506
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany