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Sequence, Chains, Asymmetric and Biological Units

Title QUINONOID INTERMEDIATE OF CITROBACTER FREUNDII TYROSINE PHEN FORMED WITH METHIONINE
Keywords PLP-DEPENDENT ENZYME, QUINONOID INTERMEDIATE, LYASE, PYRIDOX PHOSPHATE, TYROSINE DEGRADATION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2VLH     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TYROSINE PHENOL-LYASE  A 456 3612 0
2  Protein   TYROSINE PHENOL-LYASE  B 456 3612 0
3  Ligand   TYROSINE PHENOL-LYASE  A 4 0 57
4  Ligand   TYROSINE PHENOL-LYASE  B 2 0 16
5 Water     887 0 887
total       1805 7224 960

Proteins
Unit 1 MET1 ASN2 TYR3 PRO4 ALA5 GLU6 PRO7 PHE8 ARG9 ILE10 LYS11 SER12 VAL13 GLU14 THR15 VAL16 SER17 MET18 ILE19 PRO20 ARG21 ASP22 GLU23 ARG24 LEU25 LYS26 LYS27 MET28 GLN29 GLU30 ALA31 GLY32 TYR33 ASN34 THR35 PHE36 LEU37 LEU38 ASN39 SER40 LYS41 ASP42 ILE43 TYR44 ILE45 ASP46 LEU47 LEU48 THR49 ASP50 SER51 GLY52 THR53 ASN54 ALA55 MET56 SER57 ASP58 LYS59 GLN60 TRP61 ALA62 GLY63 MET64 MET65 MET66 GLY67 ASP68 GLU69 ALA70 TYR71 ALA72 GLY73 SER74 GLU75 ASN76 PHE77 TYR78 HIS79 LEU80 GLU81 ARG82 THR83 VAL84 GLN85 GLU86 LEU87 PHE88 GLY89 PHE90 LYS91 HIS92 ILE93 VAL94 PRO95 THR96 HIS97 GLN98 GLY99 ARG100 GLY101 ALA102 GLU103 ASN104 LEU105 LEU106 SER107 GLN108 LEU109 ALA110 ILE111 LYS112 PRO113 GLY114 GLN115 TYR116 VAL117 ALA118 GLY119 ASN120 MET121 TYR122 PHE123 THR124 THR125 THR126 ARG127 TYR128 HIS129 GLN130 GLU131 LYS132 ASN133 GLY134 ALA135 VAL136 PHE137 VAL138 ASP139 ILE140 VAL141 ARG142 ASP143 GLU144 ALA145 HIS146 ASP147 ALA148 GLY149 LEU150 ASN151 ILE152 ALA153 PHE154 LYS155 GLY156 ASP157 ILE158 ASP159 LEU160 LYS161 LYS162 LEU163 GLN164 LYS165 LEU166 ILE167 ASP168 GLU169 LYS170 GLY171 ALA172 GLU173 ASN174 ILE175 ALA176 TYR177 ILE178 CYS179 LEU180 ALA181 VAL182 THR183 VAL184 ASN185 LEU186 ALA187 GLY188 GLY189 GLN190 PRO191 VAL192 SER193 MET194 ALA195 ASN196 MET197 ARG198 ALA199 VAL200 ARG201 GLU202 LEU203 THR204 GLU205 ALA206 HIS207 GLY208 ILE209 LYS210 VAL211 PHE212 TYR213 ASP214 ALA215 THR216 ARG217 CYS218 VAL219 GLU220 ASN221 ALA222 TYR223 PHE224 ILE225 LYS226 GLU227 GLN228 GLU229 GLN230 GLY231 PHE232 GLU233 ASN234 LYS235 SER236 ILE237 ALA238 GLU239 ILE240 VAL241 HIS242 GLU243 MET244 PHE245 SER246 TYR247 ALA248 ASP249 GLY250 CYS251 THR252 MET253 SER254 GLY255 LYS256 LYS257 ASP258 CYS259 LEU260 VAL261 ASN262 ILE263 GLY264 GLY265 PHE266 LEU267 CYS268 MET269 ASN270 ASP271 ASP272 GLU273 MET274 PHE275 SER276 SER277 ALA278 LYS279 GLU280 LEU281 VAL282 VAL283 VAL284 TYR285 GLU286 GLY287 MET288 PRO289 SER290 TYR291 GLY292 GLY293 LEU294 ALA295 GLY296 ARG297 ASP298 MET299 GLU300 ALA301 MET302 ALA303 ILE304 GLY305 LEU306 ARG307 GLU308 ALA309 MET310 GLN311 TYR312 GLU313 TYR314 ILE315 GLU316 HIS317 ARG318 VAL319 LYS320 GLN321 VAL322 ARG323 TYR324 LEU325 GLY326 ASP327 LYS328 LEU329 LYS330 ALA331 ALA332 GLY333 VAL334 PRO335 ILE336 VAL337 GLU338 PRO339 VAL340 GLY341 GLY342 HIS343 ALA344 VAL345 PHE346 LEU347 ASP348 ALA349 ARG350 ARG351 PHE352 CYS353 GLU354 HIS355 LEU356 THR357 GLN358 ASP359 GLU360 PHE361 PRO362 ALA363 GLN364 SER365 LEU366 ALA367 ALA368 SER369 ILE370 TYR371 VAL372 GLU373 THR374 GLY375 VAL376 ARG377 SER378 MET379 GLU380 ARG381 GLY382 ILE383 ILE384 SER385 ALA386 GLY387 ARG388 ASN389 ASN390 VAL391 THR392 GLY393 GLU394 HIS395 HIS396 ARG397 PRO398 LYS399 LEU400 GLU401 THR402 VAL403 ARG404 LEU405 THR406 ILE407 PRO408 ARG409 ARG410 VAL411 TYR412 THR413 TYR414 ALA415 HIS416 MET417 ASP418 VAL419 VAL420 ALA421 ASP422 GLY423 ILE424 ILE425 LYS426 LEU427 TYR428 GLN429 HIS430 LYS431 GLU432 ASP433 ILE434 ARG435 GLY436 LEU437 LYS438 PHE439 ILE440 TYR441 GLU442 PRO443 LYS444 GLN445 LEU446 ARG447 PHE448 PHE449 THR450 ALA451 ARG452 PHE453 ASP454 TYR455 ILE456
Unit 2 MET1 ASN2 TYR3 PRO4 ALA5 GLU6 PRO7 PHE8 ARG9 ILE10 LYS11 SER12 VAL13 GLU14 THR15 VAL16 SER17 MET18 ILE19 PRO20 ARG21 ASP22 GLU23 ARG24 LEU25 LYS26 LYS27 MET28 GLN29 GLU30 ALA31 GLY32 TYR33 ASN34 THR35 PHE36 LEU37 LEU38 ASN39 SER40 LYS41 ASP42 ILE43 TYR44 ILE45 ASP46 LEU47 LEU48 THR49 ASP50 SER51 GLY52 THR53 ASN54 ALA55 MET56 SER57 ASP58 LYS59 GLN60 TRP61 ALA62 GLY63 MET64 MET65 MET66 GLY67 ASP68 GLU69 ALA70 TYR71 ALA72 GLY73 SER74 GLU75 ASN76 PHE77 TYR78 HIS79 LEU80 GLU81 ARG82 THR83 VAL84 GLN85 GLU86 LEU87 PHE88 GLY89 PHE90 LYS91 HIS92 ILE93 VAL94 PRO95 THR96 HIS97 GLN98 GLY99 ARG100 GLY101 ALA102 GLU103 ASN104 LEU105 LEU106 SER107 GLN108 LEU109 ALA110 ILE111 LYS112 PRO113 GLY114 GLN115 TYR116 VAL117 ALA118 GLY119 ASN120 MET121 TYR122 PHE123 THR124 THR125 THR126 ARG127 TYR128 HIS129 GLN130 GLU131 LYS132 ASN133 GLY134 ALA135 VAL136 PHE137 VAL138 ASP139 ILE140 VAL141 ARG142 ASP143 GLU144 ALA145 HIS146 ASP147 ALA148 GLY149 LEU150 ASN151 ILE152 ALA153 PHE154 LYS155 GLY156 ASP157 ILE158 ASP159 LEU160 LYS161 LYS162 LEU163 GLN164 LYS165 LEU166 ILE167 ASP168 GLU169 LYS170 GLY171 ALA172 GLU173 ASN174 ILE175 ALA176 TYR177 ILE178 CYS179 LEU180 ALA181 VAL182 THR183 VAL184 ASN185 LEU186 ALA187 GLY188 GLY189 GLN190 PRO191 VAL192 SER193 MET194 ALA195 ASN196 MET197 ARG198 ALA199 VAL200 ARG201 GLU202 LEU203 THR204 GLU205 ALA206 HIS207 GLY208 ILE209 LYS210 VAL211 PHE212 TYR213 ASP214 ALA215 THR216 ARG217 CYS218 VAL219 GLU220 ASN221 ALA222 TYR223 PHE224 ILE225 LYS226 GLU227 GLN228 GLU229 GLN230 GLY231 PHE232 GLU233 ASN234 LYS235 SER236 ILE237 ALA238 GLU239 ILE240 VAL241 HIS242 GLU243 MET244 PHE245 SER246 TYR247 ALA248 ASP249 GLY250 CYS251 THR252 MET253 SER254 GLY255 LYS256 LYS257 ASP258 CYS259 LEU260 VAL261 ASN262 ILE263 GLY264 GLY265 PHE266 LEU267 CYS268 MET269 ASN270 ASP271 ASP272 GLU273 MET274 PHE275 SER276 SER277 ALA278 LYS279 GLU280 LEU281 VAL282 VAL283 VAL284 TYR285 GLU286 GLY287 MET288 PRO289 SER290 TYR291 GLY292 GLY293 LEU294 ALA295 GLY296 ARG297 ASP298 MET299 GLU300 ALA301 MET302 ALA303 ILE304 GLY305 LEU306 ARG307 GLU308 ALA309 MET310 GLN311 TYR312 GLU313 TYR314 ILE315 GLU316 HIS317 ARG318 VAL319 LYS320 GLN321 VAL322 ARG323 TYR324 LEU325 GLY326 ASP327 LYS328 LEU329 LYS330 ALA331 ALA332 GLY333 VAL334 PRO335 ILE336 VAL337 GLU338 PRO339 VAL340 GLY341 GLY342 HIS343 ALA344 VAL345 PHE346 LEU347 ASP348 ALA349 ARG350 ARG351 PHE352 CYS353 GLU354 HIS355 LEU356 THR357 GLN358 ASP359 GLU360 PHE361 PRO362 ALA363 GLN364 SER365 LEU366 ALA367 ALA368 SER369 ILE370 TYR371 VAL372 GLU373 THR374 GLY375 VAL376 ARG377 SER378 MET379 GLU380 ARG381 GLY382 ILE383 ILE384 SER385 ALA386 GLY387 ARG388 ASN389 ASN390 VAL391 THR392 GLY393 GLU394 HIS395 HIS396 ARG397 PRO398 LYS399 LEU400 GLU401 THR402 VAL403 ARG404 LEU405 THR406 ILE407 PRO408 ARG409 ARG410 VAL411 TYR412 THR413 TYR414 ALA415 HIS416 MET417 ASP418 VAL419 VAL420 ALA421 ASP422 GLY423 ILE424 ILE425 LYS426 LEU427 TYR428 GLN429 HIS430 LYS431 GLU432 ASP433 ILE434 ARG435 GLY436 LEU437 LYS438 PHE439 ILE440 TYR441 GLU442 PRO443 LYS444 GLN445 LEU446 ARG447 PHE448 PHE449 THR450 ALA451 ARG452 PHE453 ASP454 TYR455 ILE456

Ligands
Unit 3 PM91457 K1458 PGE1459 P331460
Unit 4 PLP1257 K1458

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany