2VJV - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END 26-MER DNA HAIRPIN AND A 6-MER DNA REPRESENTING THE LEFT END CLEAVAGE SITE
• Keywords: DNA-BINDING PROTEIN, PROTEIN-DNA COMPLEX, HUH MOTIF, DNA STEM LOOP, TRANSPOSITION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2VJV	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRANSPOSASE ORFA	A	125	1023	0
2	Protein	TRANSPOSASE ORFA	B	125	1023	0
3	Other macromolecule	5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT  *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3'	C	26	531	0
4	Other macromolecule	5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT  *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3'	D	26	531	0
5	Other macromolecule	5'-D(*DT*DA*DT*DT*DA*DCP)-3'	E	6	118	0
6	Other macromolecule	5'-D(*DT*DA*DT*DT*DA*DCP)-3'	F	6	118	0
7	Ligand	5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT  *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3'	C	1	0	1
8	Ligand	5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT  *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3'	D	1	0	1
9	Ligand	5'-D(*DT*DA*DT*DT*DA*DCP)-3'	E	1	0	1
10	Water			275	0	275
total				592	3344	278

Proteins

Unit 1

LEU 6 TYR 7 LYS 8 SER 9 ASN 10 HIS 11 ASN 12 VAL 13 VAL 14 TYR 15 SER 16 CYS 17 LYS 18 TYR 19 HIS 20 ILE 21 VAL 22 TRP 23 CYS 24 PRO 25 LYS 26 TYR 27 ARG 28 ARG 29 LYS 30 VAL 31 LEU 32 VAL 33 GLY 34 ALA 35 VAL 36 GLU 37 MET 38 ARG 39 LEU 40 LYS 41 GLU 42 ILE 43 ILE 44 GLN 45 GLU 46 VAL 47 ALA 48 LYS 49 GLU 50 LEU 51 ARG 52 VAL 53 GLU 54 ILE 55 ILE 56 GLU 57 MET 58 GLN 59 THR 60 ASP 61 LYS 62 ASP 63 HIS 64 ILE 65 HIS 66 ILE 67 LEU 68 ALA 69 ASP 70 ILE 71 ASP 72 PRO 73 SER 74 PHE 75 GLY 76 VAL 77 MET 78 LYS 79 PHE 80 ILE 81 LYS 82 THR 83 ALA 84 LYS 85 GLY 86 ARG 87 SER 88 SER 89 ARG 90 ILE 91 LEU 92 ARG 93 GLN 94 GLU 95 PHE 96 ASN 97 HIS 98 LEU 99 LYS 100 THR 101 LYS 102 LEU 103 PRO 104 THR 105 LEU 106 TRP 107 THR 108 ASN 109 SER 110 CYS 111 PHE 112 ILE 113 SER 114 THR 115 VAL 116 GLY 117 GLY 118 ALA 119 PRO 120 LEU 121 ASN 122 VAL 123 VAL 124 LYS 125 GLN 126 TYR 127 ILE 128 GLU 129 ASN 130

Unit 2

LEU 6 TYR 7 LYS 8 SER 9 ASN 10 HIS 11 ASN 12 VAL 13 VAL 14 TYR 15 SER 16 CYS 17 LYS 18 TYR 19 HIS 20 ILE 21 VAL 22 TRP 23 CYS 24 PRO 25 LYS 26 TYR 27 ARG 28 ARG 29 LYS 30 VAL 31 LEU 32 VAL 33 GLY 34 ALA 35 VAL 36 GLU 37 MET 38 ARG 39 LEU 40 LYS 41 GLU 42 ILE 43 ILE 44 GLN 45 GLU 46 VAL 47 ALA 48 LYS 49 GLU 50 LEU 51 ARG 52 VAL 53 GLU 54 ILE 55 ILE 56 GLU 57 MET 58 GLN 59 THR 60 ASP 61 LYS 62 ASP 63 HIS 64 ILE 65 HIS 66 ILE 67 LEU 68 ALA 69 ASP 70 ILE 71 ASP 72 PRO 73 SER 74 PHE 75 GLY 76 VAL 77 MET 78 LYS 79 PHE 80 ILE 81 LYS 82 THR 83 ALA 84 LYS 85 GLY 86 ARG 87 SER 88 SER 89 ARG 90 ILE 91 LEU 92 ARG 93 GLN 94 GLU 95 PHE 96 ASN 97 HIS 98 LEU 99 LYS 100 THR 101 LYS 102 LEU 103 PRO 104 THR 105 LEU 106 TRP 107 THR 108 ASN 109 SER 110 CYS 111 PHE 112 ILE 113 SER 114 THR 115 VAL 116 GLY 117 GLY 118 ALA 119 PRO 120 LEU 121 ASN 122 VAL 123 VAL 124 LYS 125 GLN 126 TYR 127 ILE 128 GLU 129 ASN 130

Other macromolecules

Unit 3	DA 16 DA 17 DA 18 DG 19 DC 20 DC 21 DC 22 DC 23 DT 24 DA 25 DG 26 DC 27 DT 28 DT 29 DT 30 DT 31 DA 32 DG 33 DC 34 DT 35 DA 36 DT 37 DG 38 DG 39 DG 40 DG 41
Unit 4	DA 16 DA 17 DA 18 DG 19 DC 20 DC 21 DC 22 DC 23 DT 24 DA 25 DG 26 DC 27 DT 28 DT 29 DT 30 DT 31 DA 32 DG 33 DC 34 DT 35 DA 36 DT 37 DG 38 DG 39 DG 40 DG 41
Unit 5	DT -6 DA -5 DT -4 DT -3 DA -2 DC -1
Unit 6	DT -6 DA -5 DT -4 DT -3 DA -2 DC -1

Ligands

Unit 7	MG 1042
Unit 8	MG 1042
Unit 9	MG 1042