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| Title | STRUCTURE OF TRM8-TRM82, THE YEAST TRNA M7G METHYLATION COMPLEX | |
| Keywords | S-ADENOSYL-L-METHIONINE, TRNA PROCESSING, PHOSPHORYLATION, METHYLTRANSFERASE, M7G, TRNA, SPOUT MT, WD REPEAT, TRANSFERASE | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 2VDU | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE- ASSOCIATED WD REPEAT PROTEIN TRM82 | B | 374 | 3013 | 0 |
| 2 | Protein | TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE- ASSOCIATED WD REPEAT PROTEIN TRM82 | D | 376 | 3027 | 0 |
| 3 | Protein | TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE | E | 201 | 1631 | 0 |
| 4 | Protein | TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE | F | 201 | 1631 | 0 |
| 5 | Ligand | TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE | E | 1 | 0 | 5 |
| 6 | Ligand | TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE | F | 1 | 0 | 5 |
| 7 | Water | 259 | 0 | 259 | ||
| total | 1413 | 9302 | 269 |
| Unit 1 | SER2 VAL3 ILE4 HIS5 PRO6 LEU7 GLN8 ASN9 LEU10 LEU11 THR12 SER13 ARG14 ASP15 GLY16 SER17 LEU18 VAL19 PHE20 ALA21 ILE22 ILE23 LYS24 ASN25 CYS26 ILE27 LEU28 SER29 PHE30 LYS31 TYR32 GLN33 SER34 PRO35 ASN36 HIS37 TRP38 GLU39 PHE40 ALA41 GLY42 LYS43 TRP44 SER45 ASP46 ASP47 PHE48 PRO100 ILE101 TYR102 SER103 TYR104 ILE105 ARG106 ASN107 LEU108 ARG109 LEU110 THR111 SER112 ASP113 GLU114 SER115 ARG116 LEU117 ILE118 ALA119 CYS120 ALA121 ASP122 SER123 ASP124 LYS125 SER126 LEU127 LEU128 VAL129 PHE130 ASP131 VAL132 ASP133 LYS134 THR135 SER136 LYS137 ASN138 VAL139 LEU140 LYS141 LEU142 ARG143 LYS144 ARG145 PHE146 CYS147 PHE148 SER149 LYS150 ARG151 PRO152 ASN153 ALA154 ILE155 SER156 ILE157 ALA158 GLU159 ASP160 ASP161 THR162 THR163 VAL164 ILE165 ILE166 ALA167 ASP168 LYS169 PHE170 GLY171 ASP172 VAL173 TYR174 SER175 ILE176 ASP177 ILE178 ASN179 SER180 ILE181 PRO182 GLU183 GLU184 LYS185 PHE186 THR187 GLN188 GLU189 PRO190 ILE191 LEU192 GLY193 HIS194 VAL195 SER196 MET197 LEU198 THR199 ASP200 VAL201 HIS202 LEU203 ILE204 LYS205 ASP206 SER207 ASP208 GLY209 HIS210 GLN211 PHE212 ILE213 ILE214 THR215 SER216 ASP217 ARG218 ASP219 GLU220 HIS221 ILE222 LYS223 ILE224 SER225 HIS226 TYR227 PRO228 GLN229 CYS230 PHE231 ILE232 VAL233 ASP234 LYS235 TRP236 LEU237 PHE238 GLY239 HIS240 LYS241 HIS242 PHE243 VAL244 SER245 SER246 ILE247 CYS248 CYS249 GLY250 LYS251 ASP252 TYR253 LEU254 LEU255 LEU256 SER257 ALA258 GLY259 GLY260 ASP261 ASP262 LYS263 ILE264 PHE265 ALA266 TRP267 ASP268 TRP269 LYS270 THR271 GLY272 LYS273 ASN274 LEU275 SER276 THR277 PHE278 ASP279 TYR280 ASN281 SER282 LEU283 ILE284 LYS285 PRO286 TYR287 LEU288 ASN289 ASP290 GLN291 HIS292 LEU293 ALA294 ILE305 ILE306 GLU307 PHE308 ALA309 VAL310 SER311 LYS312 ILE313 ILE314 LYS315 SER316 LYS317 ASN318 LEU319 PRO320 PHE321 VAL322 ALA323 PHE324 PHE325 VAL326 GLU327 ALA328 THR329 LYS330 CYS331 ILE332 ILE333 ILE334 LEU335 GLU336 MET337 SER338 GLU339 LYS340 GLN341 LYS342 GLY343 ASP344 LEU345 ALA346 LEU347 LYS348 GLN349 ILE350 ILE351 THR352 PHE353 PRO354 TYR355 ASN356 VAL357 ILE358 SER359 LEU360 SER361 ALA362 HIS363 ASN364 ASP365 GLU366 PHE367 GLN368 VAL369 THR370 LEU371 ASP372 ASN373 LYS374 GLU375 SER376 SER377 GLY378 VAL379 GLN380 LYS381 ASN382 PHE383 ALA384 LYS385 PHE386 ILE387 GLU388 TYR389 ASN390 LEU391 ASN392 GLU393 ASN394 SER395 PHE396 VAL397 VAL398 ASN399 ASN400 GLU401 LYS402 SER403 ASN404 GLU405 PHE406 ASP407 SER408 ALA409 ILE410 ILE411 GLN412 SER413 VAL414 GLN415 GLY416 ASP417 SER418 ASN419 LEU420 VAL421 THR422 LYS423 LYS424 GLU425 GLU426 ILE427 TYR428 PRO429 LEU430 TYR431 ASN432 VAL433 SER434 SER435 LEU436 |
| Unit 2 | SER2 VAL3 ILE4 HIS5 PRO6 LEU7 GLN8 ASN9 LEU10 LEU11 THR12 SER13 ARG14 ASP15 GLY16 SER17 LEU18 VAL19 PHE20 ALA21 ILE22 ILE23 LYS24 ASN25 CYS26 ILE27 LEU28 SER29 PHE30 LYS31 TYR32 GLN33 SER34 PRO35 ASN36 HIS37 TRP38 GLU39 PHE40 ALA41 GLY42 LYS43 TRP44 SER45 ASP46 ASP47 PHE48 PRO100 ILE101 TYR102 SER103 TYR104 ILE105 ARG106 ASN107 LEU108 ARG109 LEU110 THR111 SER112 ASP113 GLU114 SER115 ARG116 LEU117 ILE118 ALA119 CYS120 ALA121 ASP122 SER123 ASP124 LYS125 SER126 LEU127 LEU128 VAL129 PHE130 ASP131 VAL132 ASP133 LYS134 THR135 SER136 LYS137 ASN138 VAL139 LEU140 LYS141 LEU142 ARG143 LYS144 ARG145 PHE146 CYS147 PHE148 SER149 LYS150 ARG151 PRO152 ASN153 ALA154 ILE155 SER156 ILE157 ALA158 GLU159 ASP160 ASP161 THR162 THR163 VAL164 ILE165 ILE166 ALA167 ASP168 LYS169 PHE170 GLY171 ASP172 VAL173 TYR174 SER175 ILE176 ASP177 ILE178 ASN179 SER180 ILE181 PRO182 GLU183 GLU184 LYS185 PHE186 THR187 GLN188 GLU189 PRO190 ILE191 LEU192 GLY193 HIS194 VAL195 SER196 MET197 LEU198 THR199 ASP200 VAL201 HIS202 LEU203 ILE204 LYS205 ASP206 SER207 ASP208 GLY209 HIS210 GLN211 PHE212 ILE213 ILE214 THR215 SER216 ASP217 ARG218 ASP219 GLU220 HIS221 ILE222 LYS223 ILE224 SER225 HIS226 TYR227 PRO228 GLN229 CYS230 PHE231 ILE232 VAL233 ASP234 LYS235 TRP236 LEU237 PHE238 GLY239 HIS240 LYS241 HIS242 PHE243 VAL244 SER245 SER246 ILE247 CYS248 CYS249 GLY250 LYS251 ASP252 TYR253 LEU254 LEU255 LEU256 SER257 ALA258 GLY259 GLY260 ASP261 ASP262 LYS263 ILE264 PHE265 ALA266 TRP267 ASP268 TRP269 LYS270 THR271 GLY272 LYS273 ASN274 LEU275 SER276 THR277 PHE278 ASP279 TYR280 ASN281 SER282 LEU283 ILE284 LYS285 PRO286 TYR287 LEU288 ASN289 ASP290 GLN291 HIS292 LEU293 ALA294 PRO295 PRO296 ILE305 ILE306 GLU307 PHE308 ALA309 VAL310 SER311 LYS312 ILE313 ILE314 LYS315 SER316 LYS317 ASN318 LEU319 PRO320 PHE321 VAL322 ALA323 PHE324 PHE325 VAL326 GLU327 ALA328 THR329 LYS330 CYS331 ILE332 ILE333 ILE334 LEU335 GLU336 MET337 SER338 GLU339 LYS340 GLN341 LYS342 GLY343 ASP344 LEU345 ALA346 LEU347 LYS348 GLN349 ILE350 ILE351 THR352 PHE353 PRO354 TYR355 ASN356 VAL357 ILE358 SER359 LEU360 SER361 ALA362 HIS363 ASN364 ASP365 GLU366 PHE367 GLN368 VAL369 THR370 LEU371 ASP372 ASN373 LYS374 GLU375 SER376 SER377 GLY378 VAL379 GLN380 LYS381 ASN382 PHE383 ALA384 LYS385 PHE386 ILE387 GLU388 TYR389 ASN390 LEU391 ASN392 GLU393 ASN394 SER395 PHE396 VAL397 VAL398 ASN399 ASN400 GLU401 LYS402 SER403 ASN404 GLU405 PHE406 ASP407 SER408 ALA409 ILE410 ILE411 GLN412 SER413 VAL414 GLN415 GLY416 ASP417 SER418 ASN419 LEU420 VAL421 THR422 LYS423 LYS424 GLU425 GLU426 ILE427 TYR428 PRO429 LEU430 TYR431 ASN432 VAL433 SER434 SER435 LEU436 |
| Unit 3 | GLN66 LEU67 GLU68 TYR69 PRO70 VAL71 SER72 PRO73 GLN74 ASP75 MET76 ASP77 TRP78 SER79 LYS80 LEU81 TYR82 PRO83 TYR84 TYR85 LYS86 ASN87 ALA88 GLU89 ASN90 GLY91 GLN92 MET93 THR94 LYS95 LYS96 VAL97 THR98 ILE99 ALA100 ASP101 ILE102 GLY103 CYS104 GLY105 PHE106 GLY107 GLY108 LEU109 MET110 ILE111 ASP112 LEU113 SER114 PRO115 ALA116 PHE117 PRO118 GLU119 ASP120 LEU121 ILE122 LEU123 GLY124 MET125 GLU126 ILE127 ARG128 VAL129 GLN130 VAL131 THR132 ASN133 TYR134 VAL135 GLU136 ASP137 ARG138 ILE139 ILE140 ALA141 LEU142 ARG143 ASN144 ASN145 THR146 ALA147 SER148 LYS149 HIS150 GLY151 PHE152 GLN153 ASN154 ILE155 ASN156 VAL157 LEU158 ARG159 GLY160 ASN161 ALA162 MET163 LYS164 PHE165 LEU166 PRO167 ASN168 PHE169 PHE170 GLU171 LYS172 GLY173 GLN174 LEU175 SER176 LYS177 MET178 PHE179 PHE180 CYS181 PHE182 PRO183 ASP184 PRO185 ARG195 ILE196 ILE197 THR198 ASN199 THR200 LEU201 LEU202 SER203 GLU204 TYR205 ALA206 TYR207 VAL208 LEU209 LYS210 GLU211 GLY212 GLY213 VAL214 VAL215 TYR216 THR217 ILE218 THR219 ASP220 VAL221 LYS222 ASP223 LEU224 HIS225 GLU226 TRP227 MET228 VAL229 LYS230 HIS231 LEU232 GLU233 GLU234 HIS235 PRO236 LEU237 PHE238 GLU239 ARG240 LEU241 SER242 LYS243 GLU244 TRP245 GLU246 GLU247 ASN248 ASP249 GLU250 CYS251 VAL252 LYS253 ILE254 MET255 ARG256 ASN257 ALA258 THR259 ASP271 LYS272 PHE273 VAL274 ALA275 CYS276 PHE277 THR278 ARG279 LEU280 PRO281 THR282 PRO283 ALA284 ILE285 LEU286 |
| Unit 4 | GLN66 LEU67 GLU68 TYR69 PRO70 VAL71 SER72 PRO73 GLN74 ASP75 MET76 ASP77 TRP78 SER79 LYS80 LEU81 TYR82 PRO83 TYR84 TYR85 LYS86 ASN87 ALA88 GLU89 ASN90 GLY91 GLN92 MET93 THR94 LYS95 LYS96 VAL97 THR98 ILE99 ALA100 ASP101 ILE102 GLY103 CYS104 GLY105 PHE106 GLY107 GLY108 LEU109 MET110 ILE111 ASP112 LEU113 SER114 PRO115 ALA116 PHE117 PRO118 GLU119 ASP120 LEU121 ILE122 LEU123 GLY124 MET125 GLU126 ILE127 ARG128 VAL129 GLN130 VAL131 THR132 ASN133 TYR134 VAL135 GLU136 ASP137 ARG138 ILE139 ILE140 ALA141 LEU142 ARG143 ASN144 ASN145 THR146 ALA147 SER148 LYS149 HIS150 GLY151 PHE152 GLN153 ASN154 ILE155 ASN156 VAL157 LEU158 ARG159 GLY160 ASN161 ALA162 MET163 LYS164 PHE165 LEU166 PRO167 ASN168 PHE169 PHE170 GLU171 LYS172 GLY173 GLN174 LEU175 SER176 LYS177 MET178 PHE179 PHE180 CYS181 PHE182 PRO183 ASP184 PRO185 ARG195 ILE196 ILE197 THR198 ASN199 THR200 LEU201 LEU202 SER203 GLU204 TYR205 ALA206 TYR207 VAL208 LEU209 LYS210 GLU211 GLY212 GLY213 VAL214 VAL215 TYR216 THR217 ILE218 THR219 ASP220 VAL221 LYS222 ASP223 LEU224 HIS225 GLU226 TRP227 MET228 VAL229 LYS230 HIS231 LEU232 GLU233 GLU234 HIS235 PRO236 LEU237 PHE238 GLU239 ARG240 LEU241 SER242 LYS243 GLU244 TRP245 GLU246 GLU247 ASN248 ASP249 GLU250 CYS251 VAL252 LYS253 ILE254 MET255 ARG256 ASN257 ALA258 THR259 ASP271 LYS272 PHE273 VAL274 ALA275 CYS276 PHE277 THR278 ARG279 LEU280 PRO281 THR282 PRO283 ALA284 ILE285 LEU286 |
| Unit 5 | PO41287 |
| Unit 6 | PO41287 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |