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Sequence, Chains, Asymmetric and Biological Units

Title INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO A CHIMERIC FIBRINO CHAIN PEPTIDE, LGGAKQRGDV
Keywords CELL ADHESION-IMMUNE SYSTEM COMPLEX, FIBRINOGEN BINDING, PLA INTEGRIN ALPHAIIBBETA3, GLYCOPROTEIN, CELL ADHESION, MEMBRA INTEGRIN, RECEPTOR, ANTAGONIST, HOST-VIRUS INTERACTION, PYR CARBOXYLIC ACID, TRANSMEMBRANE, PHOSPHORYLATION, DISEASE MU CLEAVAGE ON PAIR OF BASIC RESIDUES
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2VDR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTEGRIN ALPHA-IIB  A 452 3467 0
2  Protein   INTEGRIN BETA-3  B 455 3521 0
3  Protein   FIBRINOGEN  C 7 54 0
4  Protein   MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN  H 219 1660 0
5  Protein   MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN  L 214 1637 0
6  Ligand    D 5 0 61
7  Ligand    E 7 0 83
8  Ligand   INTEGRIN ALPHA-IIB  A 7 0 38
9  Ligand   INTEGRIN BETA-3  B 5 0 23
10 Water     1142 0 1142
total       2513 10339 1347

Proteins
Unit 1 LEU1 ASN2 LEU3 ASP4 PRO5 VAL6 GLN7 LEU8 THR9 PHE10 TYR11 ALA12 GLY13 PRO14 ASN15 GLY16 SER17 GLN18 PHE19 GLY20 PHE21 SER22 LEU23 ASP24 PHE25 HIS26 LYS27 ASP28 SER29 HIS30 GLY31 ARG32 VAL33 ALA34 ILE35 VAL36 VAL37 GLY38 ALA39 PRO40 ARG41 THR42 LEU43 GLY44 PRO45 SER46 GLN47 GLU48 GLU49 THR50 GLY51 GLY52 VAL53 PHE54 LEU55 CYS56 PRO57 TRP58 ARG59 ALA60 GLU61 GLY62 GLY63 GLN64 CYS65 PRO66 SER67 LEU68 LEU69 PHE70 ASP71 LEU72 ARG73 ASP74 GLU75 THR76 ARG77 ASN78 VAL79 GLY80 SER81 GLN82 THR83 LEU84 GLN85 THR86 PHE87 LYS88 ALA89 ARG90 GLN91 GLY92 LEU93 GLY94 ALA95 SER96 VAL97 VAL98 SER99 TRP100 SER101 ASP102 VAL103 ILE104 VAL105 ALA106 CYS107 ALA108 PRO109 TRP110 GLN111 HIS112 TRP113 ASN114 VAL115 LEU116 GLU117 LYS118 THR119 GLU120 GLU121 ALA122 GLU123 LYS124 THR125 PRO126 VAL127 GLY128 SER129 CYS130 PHE131 LEU132 ALA133 GLN134 PRO135 GLU136 SER137 GLY138 ARG139 ARG140 ALA141 GLU142 TYR143 SER144 PRO145 CYS146 ARG147 GLY148 ASN149 THR150 LEU151 SER152 ARG153 ILE154 TYR155 VAL156 GLU157 ASN158 ASP159 PHE160 SER161 TRP162 ASP163 LYS164 ARG165 TYR166 CYS167 GLU168 ALA169 GLY170 PHE171 SER172 SER173 VAL174 VAL175 THR176 GLN177 ALA178 GLY179 GLU180 LEU181 VAL182 LEU183 GLY184 ALA185 PRO186 GLY187 GLY188 TYR189 TYR190 PHE191 LEU192 GLY193 LEU194 LEU195 ALA196 GLN197 ALA198 PRO199 VAL200 ALA201 ASP202 ILE203 PHE204 SER205 SER206 TYR207 ARG208 PRO209 GLY210 ILE211 LEU212 LEU213 TRP214 HIS215 VAL216 SER217 SER218 GLN219 SER220 LEU221 SER222 PHE223 ASP224 SER225 SER226 ASN227 PRO228 GLU229 TYR230 PHE231 ASP232 GLY233 TYR234 TRP235 GLY236 TYR237 SER238 VAL239 ALA240 VAL241 GLY242 GLU243 PHE244 ASP245 GLY246 ASP247 LEU248 ASN249 THR250 THR251 GLU252 TYR253 VAL254 VAL255 GLY256 ALA257 PRO258 THR259 TRP260 SER261 TRP262 THR263 LEU264 GLY265 ALA266 VAL267 GLU268 ILE269 LEU270 ASP271 SER272 TYR273 TYR274 GLN275 ARG276 LEU277 HIS278 ARG279 LEU280 ARG281 GLY282 GLU283 GLN284 MET285 ALA286 SER287 TYR288 PHE289 GLY290 HIS291 SER292 VAL293 ALA294 VAL295 THR296 ASP297 VAL298 ASN299 GLY300 ASP301 GLY302 ARG303 HIS304 ASP305 LEU306 LEU307 VAL308 GLY309 ALA310 PRO311 LEU312 TYR313 MET314 GLU315 SER316 ARG317 ALA318 ASP319 ARG320 LYS321 LEU322 ALA323 GLU324 VAL325 GLY326 ARG327 VAL328 TYR329 LEU330 PHE331 LEU332 GLN333 PRO334 ARG335 GLY336 PRO337 HIS338 ALA339 LEU340 GLY341 ALA342 PRO343 SER344 LEU345 LEU346 LEU347 THR348 GLY349 THR350 GLN351 LEU352 TYR353 GLY354 ARG355 PHE356 GLY357 SER358 ALA359 ILE360 ALA361 PRO362 LEU363 GLY364 ASP365 LEU366 ASP367 ARG368 ASP369 GLY370 TYR371 ASN372 ASP373 ILE374 ALA375 VAL376 ALA377 ALA378 PRO379 TYR380 GLY381 GLY382 PRO383 SER384 GLY385 ARG386 GLY387 GLN388 VAL389 LEU390 VAL391 PHE392 LEU393 GLY394 GLN395 SER396 GLU397 GLY398 LEU399 ARG400 SER401 ARG402 PRO403 SER404 GLN405 VAL406 LEU407 ASP408 SER409 PRO410 PHE411 PRO412 THR413 GLY414 SER415 ALA416 PHE417 GLY418 PHE419 SER420 LEU421 ARG422 GLY423 ALA424 VAL425 ASP426 ILE427 ASP428 ASP429 ASN430 GLY431 TYR432 PRO433 ASP434 LEU435 ILE436 VAL437 GLY438 ALA439 TYR440 GLY441 ALA442 ASN443 GLN444 VAL445 ALA446 VAL447 TYR448 ARG449 ALA450 GLN451 PRO452
Unit 2 GLY1 PRO2 ASN3 ILE4 CYS5 THR6 THR7 ARG8 GLY9 VAL10 SER11 SER12 CYS13 GLN14 GLN15 CYS16 LEU17 ALA18 VAL19 SER20 PRO21 MET22 CYS23 ALA24 TRP25 CYS26 SER27 ASP28 GLU29 ALA30 LEU31 PRO32 LEU33 GLY34 SER35 PRO36 ARG37 CYS38 ASP39 LEU40 LYS41 GLU42 ASN43 LEU44 LEU45 LYS46 ASP47 ASN48 CYS49 ALA50 PRO51 GLU52 SER53 ILE54 GLU55 PHE56 PRO57 VAL58 SER59 GLU60 ALA61 ARG62 VAL63 LEU64 GLU65 ASP66 ARG67 PRO68 LEU69 SER70 ASP71 LYS72 GLN79 VAL80 THR81 GLN82 VAL83 SER84 PRO85 GLN86 ARG87 ILE88 ALA89 LEU90 ARG91 LEU92 ARG93 PRO94 ASP95 ASP96 SER97 LYS98 ASN99 PHE100 SER101 ILE102 GLN103 VAL104 ARG105 GLN106 VAL107 GLU108 ASP109 TYR110 PRO111 VAL112 ASP113 ILE114 TYR115 TYR116 LEU117 MET118 ASP119 LEU120 SER121 TYR122 SER123 MET124 LYS125 ASP126 ASP127 LEU128 TRP129 SER130 ILE131 GLN132 ASN133 LEU134 GLY135 THR136 LYS137 LEU138 ALA139 THR140 GLN141 MET142 ARG143 LYS144 LEU145 THR146 SER147 ASN148 LEU149 ARG150 ILE151 GLY152 PHE153 GLY154 ALA155 PHE156 VAL157 ASP158 LYS159 PRO160 VAL161 SER162 PRO163 TYR164 MET165 TYR166 ILE167 SER168 PRO169 PRO170 GLU171 ALA172 LEU173 GLU174 ASN175 PRO176 CYS177 TYR178 ASP179 MET180 LYS181 THR182 THR183 CYS184 LEU185 PRO186 MET187 PHE188 GLY189 TYR190 LYS191 HIS192 VAL193 LEU194 THR195 LEU196 THR197 ASP198 GLN199 VAL200 THR201 ARG202 PHE203 ASN204 GLU205 GLU206 VAL207 LYS208 LYS209 GLN210 SER211 VAL212 SER213 ARG214 ASN215 ARG216 ASP217 ALA218 PRO219 GLU220 GLY221 GLY222 PHE223 ASP224 ALA225 ILE226 MET227 GLN228 ALA229 THR230 VAL231 CYS232 ASP233 GLU234 LYS235 ILE236 GLY237 TRP238 ARG239 ASN240 ASP241 ALA242 SER243 HIS244 LEU245 LEU246 VAL247 PHE248 THR249 THR250 ASP251 ALA252 LYS253 THR254 HIS255 ILE256 ALA257 LEU258 ASP259 GLY260 ARG261 LEU262 ALA263 GLY264 ILE265 VAL266 GLN267 PRO268 ASN269 ASP270 GLY271 GLN272 CYS273 HIS274 VAL275 GLY276 SER277 ASP278 ASN279 HIS280 TYR281 SER282 ALA283 SER284 THR285 THR286 MET287 ASP288 TYR289 PRO290 SER291 LEU292 GLY293 LEU294 MET295 THR296 GLU297 LYS298 LEU299 SER300 GLN301 LYS302 ASN303 ILE304 ASN305 LEU306 ILE307 PHE308 ALA309 VAL310 THR311 GLU312 ASN313 VAL314 VAL315 ASN316 LEU317 TYR318 GLN319 ASN320 TYR321 SER322 GLU323 LEU324 ILE325 PRO326 GLY327 THR328 THR329 VAL330 GLY331 VAL332 LEU333 SER334 MET335 ASP336 SER337 SER338 ASN339 VAL340 LEU341 GLN342 LEU343 ILE344 VAL345 ASP346 ALA347 TYR348 GLY349 LYS350 ILE351 ARG352 SER353 LYS354 VAL355 GLU356 LEU357 GLU358 VAL359 ARG360 ASP361 LEU362 PRO363 GLU364 GLU365 LEU366 SER367 LEU368 SER369 PHE370 ASN371 ALA372 THR373 CYS374 LEU375 ASN376 ASN377 GLU378 VAL379 ILE380 PRO381 GLY382 LEU383 LYS384 SER385 CYS386 MET387 GLY388 LEU389 LYS390 ILE391 GLY392 ASP393 THR394 VAL395 SER396 PHE397 SER398 ILE399 GLU400 ALA401 LYS402 VAL403 ARG404 GLY405 CYS406 PRO407 GLN408 GLU409 LYS410 GLU411 LYS412 SER413 PHE414 THR415 ILE416 LYS417 PRO418 VAL419 GLY420 PHE421 LYS422 ASP423 SER424 LEU425 ILE426 VAL427 GLN428 VAL429 THR430 PHE431 ASP432 CYS433 ASP434 CYS435 ALA436 CYS437 GLN438 ALA439 GLN440 ALA441 GLU442 PRO443 ASN444 SER445 HIS446 ARG447 CYS448 ASN449 ASN450 GLY451 ASN452 GLY453 THR454 PHE455 GLU456 CYS457 GLY458 VAL459 CYS460 ARG461
Unit 3 ALA405 LYS406 GLN407 ARG408 GLY409 ASP410 VAL411
Unit 4 GLU1 VAL2 GLN3 LEU4 GLN5 GLN6 SER7 GLY8 ALA9 GLU10 LEU11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 THR23 ALA24 SER25 GLY26 PHE27 ASN28 ILE29 LYS30 ASP31 THR32 TYR33 VAL34 HIS35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 GLU42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ARG50 ILE51 ASP52 PRO53 ALA54 ASN55 GLY56 TYR57 THR58 LYS59 TYR60 ASP61 PRO62 LYS63 PHE64 GLN65 GLY66 LYS67 ALA68 THR69 ILE70 THR71 ALA72 ASP73 THR74 SER75 SER76 ASN77 THR78 ALA79 TYR80 LEU81 GLN82 LEU83 SER84 SER85 LEU86 THR87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 VAL97 ARG98 PRO99 LEU100 TYR101 ASP102 TYR103 TYR104 ALA105 MET106 ASP107 TYR108 TRP109 GLY110 GLN111 GLY112 THR113 SER114 VAL115 THR116 VAL117 SER118 SER119 ALA120 LYS121 THR122 THR123 ALA124 PRO125 SER126 VAL127 TYR128 PRO129 LEU130 ALA131 PRO132 VAL133 CYS134 THR137 THR138 GLY139 SER140 SER141 VAL142 THR143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 GLY150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 LEU158 THR159 TRP160 ASN161 SER162 GLY163 SER164 LEU165 SER166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 ASP179 LEU180 TYR181 THR182 LEU183 SER184 SER185 SER186 VAL187 THR188 VAL189 THR190 SER191 SER192 THR193 TRP194 PRO195 SER196 GLN197 SER198 ILE199 THR200 CYS201 ASN202 VAL203 ALA204 HIS205 PRO206 ALA207 SER208 SER209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 ILE216 GLU217 PRO218 ARG219 GLY220 PRO221
Unit 5 ASP1 ILE2 LEU3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 MET11 SER12 VAL13 SER14 LEU15 GLY16 ASP17 THR18 VAL19 SER20 ILE21 THR22 CYS23 HIS24 ALA25 SER26 GLN27 GLY28 ILE29 SER30 SER31 ASN32 ILE33 GLY34 TRP35 LEU36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 SER43 PHE44 MET45 GLY46 LEU47 ILE48 TYR49 TYR50 GLY51 THR52 ASN53 LEU54 VAL55 ASP56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 ALA69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 SER77 LEU78 ASP79 SER80 GLU81 ASP82 PHE83 ALA84 ASP85 TYR86 TYR87 CYS88 VAL89 GLN90 TYR91 ALA92 GLN93 LEU94 PRO95 TYR96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213 CYS214

Ligands
Unit 6 NAG1 NAG2 MAN3 MAN4 MAN5
Unit 7 NAG1 NAG2 MAN3 MAN4 MAN5 MAN6 MAN7
Unit 8 GOL1453 CA2004 CA2005 CA2006 CA2007 NAG3015 NAG3249
Unit 9 GOL1462 MG2001 CA2002 CA2003 NAG3099

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany