2VD8 - Sequence, Chains, Asymmetric and Biological Units

• Title: THE CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM BACILLUS ANTHRACIS (BA0252)
• Keywords: PYRIDOXAL 5'-PHOSPHATE, PEPTIDOGLYCAN SYNTHESIS, PLP, OPPF, L-ALANINE, ISOMERASE, D- ALANINE, PYRIDOXAL PHOSPHATE, STRU GENOMICS, ALANINE RACEMASE, SPORE GERMINATION, OXFORD PROTE PRODUCTION FACILITY, STRUCTURAL PROTEOMICS IN EUROPE (SPINE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2VD8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ALANINE RACEMASE	A	387	2909	198
2	Protein	ALANINE RACEMASE	B	386	2900	198
3	Ligand	ALANINE RACEMASE	A	4	0	18
4	Ligand	ALANINE RACEMASE	B	5	0	19
5	Water			1020	0	1020
total				1802	5809	1453

Proteins

Unit 1

GLU 3 ALA 4 PRO 5 PHE 6 TYR 7 ARG 8 ASP 9 THR 10 TRP 11 VAL 12 GLU 13 VAL 14 ASP 15 LEU 16 ASP 17 ALA 18 ILE 19 TYR 20 ASN 21 ASN 22 VAL 23 THR 24 HIS 25 ILE 26 MLY 27 GLU 28 PHE 29 ILE 30 PRO 31 SER 32 ASP 33 VAL 34 GLU 35 ILE 36 PHE 37 ALA 38 VAL 39 VAL 40 LYS 41 GLY 42 ASN 43 ALA 44 TYR 45 GLY 46 HIS 47 ASP 48 TYR 49 VAL 50 PRO 51 VAL 52 ALA 53 MLY 54 ILE 55 ALA 56 LEU 57 GLU 58 ALA 59 GLY 60 ALA 61 THR 62 ARG 63 LEU 64 ALA 65 VAL 66 ALA 67 PHE 68 LEU 69 ASP 70 GLU 71 ALA 72 LEU 73 VAL 74 LEU 75 ARG 76 ARG 77 ALA 78 GLY 79 ILE 80 THR 81 ALA 82 PRO 83 ILE 84 LEU 85 VAL 86 LEU 87 GLY 88 PRO 89 SER 90 PRO 91 PRO 92 ARG 93 ASP 94 ILE 95 ASN 96 VAL 97 ALA 98 ALA 99 GLU 100 ASN 101 ASP 102 VAL 103 ALA 104 LEU 105 THR 106 VAL 107 PHE 108 GLN 109 MLY 110 GLU 111 TRP 112 VAL 113 ASP 114 GLU 115 ALA 116 ILE 117 MLY 118 LEU 119 TRP 120 ASP 121 GLY 122 SER 123 SER 124 THR 125 MET 126 MLY 127 TYR 128 HIS 129 ILE 130 ASN 131 PHE 132 ASP 133 SER 134 GLY 135 MET 136 GLY 137 ARG 138 ILE 139 GLY 140 ILE 141 ARG 142 GLU 143 ARG 144 MLY 145 GLU 146 LEU 147 MLY 148 GLY 149 PHE 150 LEU 151 MLY 152 SER 153 LEU 154 GLU 155 GLY 156 ALA 157 PRO 158 PHE 159 LEU 160 GLU 161 LEU 162 GLU 163 GLY 164 VAL 165 TYR 166 THR 167 HIS 168 PHE 169 ALA 170 THR 171 ALA 172 ASP 173 GLU 174 VAL 175 GLU 176 THR 177 SER 178 TYR 179 PHE 180 ASP 181 MLY 182 GLN 183 TYR 184 ASN 185 THR 186 PHE 187 LEU 188 GLU 189 GLN 190 LEU 191 SER 192 TRP 193 LEU 194 MLY 195 GLU 196 PHE 197 GLY 198 VAL 199 ASP 200 PRO 201 MLY 202 PHE 203 VAL 204 HIS 205 THR 206 ALA 207 ASN 208 SER 209 ALA 210 ALA 211 THR 212 LEU 213 ARG 214 PHE 215 GLN 216 GLY 217 ILE 218 THR 219 PHE 220 ASN 221 ALA 222 VAL 223 ARG 224 ILE 225 GLY 226 ILE 227 ALA 228 MET 229 TYR 230 GLY 231 LEU 232 SER 233 PRO 234 SER 235 VAL 236 GLU 237 ILE 238 ARG 239 PRO 240 PHE 241 LEU 242 PRO 243 PHE 244 MLY 245 LEU 246 GLU 247 PRO 248 ALA 249 LEU 250 SER 251 LEU 252 HIS 253 THR 254 MLY 255 VAL 256 ALA 257 HIS 258 ILE 259 LYS 260 GLN 261 VAL 262 ILE 263 MLY 264 GLY 265 ASP 266 GLY 267 ILE 268 SER 269 TYR 270 ASN 271 VAL 272 THR 273 TYR 274 ARG 275 THR 276 MLY 277 THR 278 GLU 279 GLU 280 TRP 281 ILE 282 ALA 283 THR 284 VAL 285 ALA 286 ILE 287 GLY 288 TYR 289 ALA 290 ASP 291 GLY 292 TRP 293 LEU 294 ARG 295 ARG 296 LEU 297 GLN 298 GLY 299 PHE 300 GLU 301 VAL 302 LEU 303 VAL 304 ASN 305 GLY 306 MLY 307 ARG 308 VAL 309 PRO 310 ILE 311 VAL 312 GLY 313 ARG 314 VAL 315 THR 316 MET 317 ASP 318 GLN 319 PHE 320 MET 321 ILE 322 HIS 323 LEU 324 PRO 325 CYS 326 GLU 327 VAL 328 PRO 329 LEU 330 GLY 331 THR 332 MLY 333 VAL 334 THR 335 LEU 336 ILE 337 GLY 338 ARG 339 GLN 340 GLY 341 ASP 342 GLU 343 TYR 344 ILE 345 SER 346 ALA 347 THR 348 GLU 349 VAL 350 ALA 351 GLU 352 TYR 353 SER 354 GLY 355 THR 356 ILE 357 ASN 358 TYR 359 GLU 360 ILE 361 ILE 362 THR 363 THR 364 ILE 365 SER 366 PHE 367 ARG 368 VAL 369 PRO 370 ARG 371 ILE 372 PHE 373 ILE 374 ARG 375 ASN 376 GLY 377 MLY 378 VAL 379 VAL 380 GLU 381 VAL 382 ILE 383 ASN 384 TYR 385 LEU 386 ASN 387 ASP 388 ILE 389

Unit 2

ALA 4 PRO 5 PHE 6 TYR 7 ARG 8 ASP 9 THR 10 TRP 11 VAL 12 GLU 13 VAL 14 ASP 15 LEU 16 ASP 17 ALA 18 ILE 19 TYR 20 ASN 21 ASN 22 VAL 23 THR 24 HIS 25 ILE 26 MLY 27 GLU 28 PHE 29 ILE 30 PRO 31 SER 32 ASP 33 VAL 34 GLU 35 ILE 36 PHE 37 ALA 38 VAL 39 VAL 40 LYS 41 GLY 42 ASN 43 ALA 44 TYR 45 GLY 46 HIS 47 ASP 48 TYR 49 VAL 50 PRO 51 VAL 52 ALA 53 MLY 54 ILE 55 ALA 56 LEU 57 GLU 58 ALA 59 GLY 60 ALA 61 THR 62 ARG 63 LEU 64 ALA 65 VAL 66 ALA 67 PHE 68 LEU 69 ASP 70 GLU 71 ALA 72 LEU 73 VAL 74 LEU 75 ARG 76 ARG 77 ALA 78 GLY 79 ILE 80 THR 81 ALA 82 PRO 83 ILE 84 LEU 85 VAL 86 LEU 87 GLY 88 PRO 89 SER 90 PRO 91 PRO 92 ARG 93 ASP 94 ILE 95 ASN 96 VAL 97 ALA 98 ALA 99 GLU 100 ASN 101 ASP 102 VAL 103 ALA 104 LEU 105 THR 106 VAL 107 PHE 108 GLN 109 MLY 110 GLU 111 TRP 112 VAL 113 ASP 114 GLU 115 ALA 116 ILE 117 MLY 118 LEU 119 TRP 120 ASP 121 GLY 122 SER 123 SER 124 THR 125 MET 126 MLY 127 TYR 128 HIS 129 ILE 130 ASN 131 PHE 132 ASP 133 SER 134 GLY 135 MET 136 GLY 137 ARG 138 ILE 139 GLY 140 ILE 141 ARG 142 GLU 143 ARG 144 MLY 145 GLU 146 LEU 147 MLY 148 GLY 149 PHE 150 LEU 151 MLY 152 SER 153 LEU 154 GLU 155 GLY 156 ALA 157 PRO 158 PHE 159 LEU 160 GLU 161 LEU 162 GLU 163 GLY 164 VAL 165 TYR 166 THR 167 HIS 168 PHE 169 ALA 170 THR 171 ALA 172 ASP 173 GLU 174 VAL 175 GLU 176 THR 177 SER 178 TYR 179 PHE 180 ASP 181 MLY 182 GLN 183 TYR 184 ASN 185 THR 186 PHE 187 LEU 188 GLU 189 GLN 190 LEU 191 SER 192 TRP 193 LEU 194 MLY 195 GLU 196 PHE 197 GLY 198 VAL 199 ASP 200 PRO 201 MLY 202 PHE 203 VAL 204 HIS 205 THR 206 ALA 207 ASN 208 SER 209 ALA 210 ALA 211 THR 212 LEU 213 ARG 214 PHE 215 GLN 216 GLY 217 ILE 218 THR 219 PHE 220 ASN 221 ALA 222 VAL 223 ARG 224 ILE 225 GLY 226 ILE 227 ALA 228 MET 229 TYR 230 GLY 231 LEU 232 SER 233 PRO 234 SER 235 VAL 236 GLU 237 ILE 238 ARG 239 PRO 240 PHE 241 LEU 242 PRO 243 PHE 244 MLY 245 LEU 246 GLU 247 PRO 248 ALA 249 LEU 250 SER 251 LEU 252 HIS 253 THR 254 MLY 255 VAL 256 ALA 257 HIS 258 ILE 259 LYS 260 GLN 261 VAL 262 ILE 263 MLY 264 GLY 265 ASP 266 GLY 267 ILE 268 SER 269 TYR 270 ASN 271 VAL 272 THR 273 TYR 274 ARG 275 THR 276 MLY 277 THR 278 GLU 279 GLU 280 TRP 281 ILE 282 ALA 283 THR 284 VAL 285 ALA 286 ILE 287 GLY 288 TYR 289 ALA 290 ASP 291 GLY 292 TRP 293 LEU 294 ARG 295 ARG 296 LEU 297 GLN 298 GLY 299 PHE 300 GLU 301 VAL 302 LEU 303 VAL 304 ASN 305 GLY 306 MLY 307 ARG 308 VAL 309 PRO 310 ILE 311 VAL 312 GLY 313 ARG 314 VAL 315 THR 316 MET 317 ASP 318 GLN 319 PHE 320 MET 321 ILE 322 HIS 323 LEU 324 PRO 325 CYS 326 GLU 327 VAL 328 PRO 329 LEU 330 GLY 331 THR 332 MLY 333 VAL 334 THR 335 LEU 336 ILE 337 GLY 338 ARG 339 GLN 340 GLY 341 ASP 342 GLU 343 TYR 344 ILE 345 SER 346 ALA 347 THR 348 GLU 349 VAL 350 ALA 351 GLU 352 TYR 353 SER 354 GLY 355 THR 356 ILE 357 ASN 358 TYR 359 GLU 360 ILE 361 ILE 362 THR 363 THR 364 ILE 365 SER 366 PHE 367 ARG 368 VAL 369 PRO 370 ARG 371 ILE 372 PHE 373 ILE 374 ARG 375 ASN 376 GLY 377 MLY 378 VAL 379 VAL 380 GLU 381 VAL 382 ILE 383 ASN 384 TYR 385 LEU 386 ASN 387 ASP 388 ILE 389

Ligands

Unit 3	PLP 1041 MG 1390 CL 1391 CL 1392
Unit 4	MG 1001 MG 1002 MG 1003 PLP 1041 CL 1390