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Sequence, Chains, Asymmetric and Biological Units

Title THE COMPLEX STRUCTURE OF THE BRANCHED-CHAIN KETO ACID DECARBOXYLASE (KDCA) FROM LACTOCOCCUS LACTIS WITH 2R-1- HYDROXYETHYL-DEAZATHDP
Keywords KDCA, FLAVOPROTEIN, THDP-DEPENDENT ENZYMES, THIAMINE PYROPHOSPHATE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2VBG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BRANCHED-CHAIN ALPHA-KETOACID DECARBOXYLASE  A 546 4282 0
2  Protein   BRANCHED-CHAIN ALPHA-KETOACID DECARBOXYLASE  B 544 4261 0
3  Ligand   BRANCHED-CHAIN ALPHA-KETOACID DECARBOXYLASE  A 2 0 30
4  Ligand   BRANCHED-CHAIN ALPHA-KETOACID DECARBOXYLASE  B 2 0 30
5 Water     950 0 950
total       2044 8543 1010
Proteins
Unit 1 HIS-14 SER-13 SER-12 GLY-11 LEU-10 MET1 TYR2 THR3 VAL4 GLY5 ASP6 TYR7 LEU8 LEU9 ASP10 ARG11 LEU12 HIS13 GLU14 LEU15 GLY16 ILE17 GLU18 GLU19 ILE20 PHE21 GLY22 VAL23 PRO24 GLY25 ASP26 TYR27 ASN28 LEU29 GLN30 PHE31 LEU32 ASP33 GLN34 ILE35 ILE36 SER37 ARG38 GLU39 ASP40 MET41 LYS42 TRP43 ILE44 GLY45 ASN46 ALA47 ASN48 GLU49 LEU50 ASN51 ALA52 SER53 TYR54 MET55 ALA56 ASP57 GLY58 TYR59 ALA60 ARG61 THR62 LYS63 LYS64 ALA65 ALA66 ALA67 PHE68 LEU69 THR70 THR71 PHE72 GLY73 VAL74 GLY75 GLU76 LEU77 SER78 ALA79 ILE80 ASN81 GLY82 LEU83 ALA84 GLY85 SER86 TYR87 ALA88 GLU89 ASN90 LEU91 PRO92 VAL93 VAL94 GLU95 ILE96 VAL97 GLY98 SER99 PRO100 THR101 SER102 LYS103 VAL104 GLN105 ASN106 ASP107 GLY108 LYS109 PHE110 VAL111 HIS112 HIS113 THR114 LEU115 ALA116 ASP117 GLY118 ASP119 PHE120 LYS121 HIS122 PHE123 MET124 LYS125 MET126 HIS127 GLU128 PRO129 VAL130 THR131 ALA132 ALA133 ARG134 THR135 LEU136 LEU137 THR138 ALA139 GLU140 ASN141 ALA142 THR143 TYR144 GLU145 ILE146 ASP147 ARG148 VAL149 LEU150 SER151 GLN152 LEU153 LEU154 LYS155 GLU156 ARG157 LYS158 PRO159 VAL160 TYR161 ILE162 ASN163 LEU164 PRO165 VAL166 ASP167 VAL168 ALA169 ALA170 ALA171 LYS172 ALA173 GLU174 LYS175 PRO176 ALA177 LEU178 SER179 LEU180 GLU181 ASN188 THR189 THR190 GLU191 GLN192 VAL193 ILE194 LEU195 SER196 LYS197 ILE198 GLU199 GLU200 SER201 LEU202 LYS203 ASN204 ALA205 GLN206 LYS207 PRO208 VAL209 VAL210 ILE211 ALA212 GLY213 HIS214 GLU215 VAL216 ILE217 SER218 PHE219 GLY220 LEU221 GLU222 LYS223 THR224 VAL225 THR226 GLN227 PHE228 VAL229 SER230 GLU231 THR232 LYS233 LEU234 PRO235 ILE236 THR237 THR238 LEU239 ASN240 PHE241 GLY242 LYS243 SER244 ALA245 VAL246 ASP247 GLU248 SER249 LEU250 PRO251 SER252 PHE253 LEU254 GLY255 ILE256 TYR257 ASN258 GLY259 LYS260 LEU261 SER262 GLU263 ILE264 SER265 LEU266 LYS267 ASN268 PHE269 VAL270 GLU271 SER272 ALA273 ASP274 PHE275 ILE276 LEU277 MET278 LEU279 GLY280 VAL281 LYS282 LEU283 THR284 ASP285 SER286 SER287 THR288 GLY289 ALA290 PHE291 THR292 HIS293 HIS294 LEU295 ASP296 GLU297 ASN298 LYS299 MET300 ILE301 SER302 LEU303 ASN304 ILE305 ASP306 GLU307 GLY308 ILE309 ILE310 PHE311 ASN312 LYS313 VAL314 VAL315 GLU316 ASP317 PHE318 ASP319 PHE320 ARG321 ALA322 VAL323 VAL324 SER325 SER326 LEU327 SER328 GLU329 LEU330 LYS331 GLY332 ILE333 GLU334 TYR335 GLU336 GLY337 GLN338 TYR339 ILE340 ASP341 LYS342 GLN343 TYR344 GLU345 GLU346 PHE347 ILE348 PRO349 SER350 SER351 ALA352 PRO353 LEU354 SER355 GLN356 ASP357 ARG358 LEU359 TRP360 GLN361 ALA362 VAL363 GLU364 SER365 LEU366 THR367 GLN368 SER369 ASN370 GLU371 THR372 ILE373 VAL374 ALA375 GLU376 GLN377 GLY378 THR379 SER380 PHE381 PHE382 GLY383 ALA384 SER385 THR386 ILE387 PHE388 LEU389 LYS390 SER391 ASN392 SER393 ARG394 PHE395 ILE396 GLY397 GLN398 PRO399 LEU400 TRP401 GLY402 SER403 ILE404 GLY405 TYR406 THR407 PHE408 PRO409 ALA410 ALA411 LEU412 GLY413 SER414 GLN415 ILE416 ALA417 ASP418 LYS419 GLU420 SER421 ARG422 HIS423 LEU424 LEU425 PHE426 ILE427 GLY428 ASP429 GLY430 SER431 LEU432 GLN433 LEU434 THR435 VAL436 GLN437 GLU438 LEU439 GLY440 LEU441 SER442 ILE443 ARG444 GLU445 LYS446 LEU447 ASN448 PRO449 ILE450 CYS451 PHE452 ILE453 ILE454 ASN455 ASN456 ASP457 GLY458 TYR459 THR460 VAL461 GLU462 ARG463 GLU464 ILE465 HIS466 GLY467 PRO468 THR469 GLN470 SER471 TYR472 ASN473 ASP474 ILE475 PRO476 MET477 TRP478 ASN479 TYR480 SER481 LYS482 LEU483 PRO484 GLU485 THR486 PHE487 GLY488 ALA489 THR490 GLU491 ASP492 ARG493 VAL494 VAL495 SER496 LYS497 ILE498 VAL499 ARG500 THR501 GLU502 ASN503 GLU504 PHE505 VAL506 SER507 VAL508 MET509 LYS510 GLU511 ALA512 GLN513 ALA514 ASP515 VAL516 ASN517 ARG518 MET519 TYR520 TRP521 ILE522 GLU523 LEU524 VAL525 LEU526 GLU527 LYS528 GLU529 ASP530 ALA531 PRO532 LYS533 LEU534 LEU535 LYS536 LYS537 MET538 GLY539 LYS540 LEU541 PHE542 ALA543 GLU544 GLN545 ASN546 LYS547
Unit 2 HIS-14 SER-13 SER-12 GLY-11 LEU-10 MET1 TYR2 THR3 VAL4 GLY5 ASP6 TYR7 LEU8 LEU9 ASP10 ARG11 LEU12 HIS13 GLU14 LEU15 GLY16 ILE17 GLU18 GLU19 ILE20 PHE21 GLY22 VAL23 PRO24 GLY25 ASP26 TYR27 ASN28 LEU29 GLN30 PHE31 LEU32 ASP33 GLN34 ILE35 ILE36 SER37 ARG38 GLU39 ASP40 MET41 LYS42 TRP43 ILE44 GLY45 ASN46 ALA47 ASN48 GLU49 LEU50 ASN51 ALA52 SER53 TYR54 MET55 ALA56 ASP57 GLY58 TYR59 ALA60 ARG61 THR62 LYS63 LYS64 ALA65 ALA66 ALA67 PHE68 LEU69 THR70 THR71 PHE72 GLY73 VAL74 GLY75 GLU76 LEU77 SER78 ALA79 ILE80 ASN81 GLY82 LEU83 ALA84 GLY85 SER86 TYR87 ALA88 GLU89 ASN90 LEU91 PRO92 VAL93 VAL94 GLU95 ILE96 VAL97 GLY98 SER99 PRO100 THR101 SER102 LYS103 VAL104 GLN105 ASN106 ASP107 GLY108 LYS109 PHE110 VAL111 HIS112 HIS113 THR114 LEU115 ALA116 ASP117 GLY118 ASP119 PHE120 LYS121 HIS122 PHE123 MET124 LYS125 MET126 HIS127 GLU128 PRO129 VAL130 THR131 ALA132 ALA133 ARG134 THR135 LEU136 LEU137 THR138 ALA139 GLU140 ASN141 ALA142 THR143 TYR144 GLU145 ILE146 ASP147 ARG148 VAL149 LEU150 SER151 GLN152 LEU153 LEU154 LYS155 GLU156 ARG157 LYS158 PRO159 VAL160 TYR161 ILE162 ASN163 LEU164 PRO165 VAL166 ASP167 VAL168 ALA169 ALA170 ALA171 LYS172 ALA173 GLU174 LYS175 PRO176 ALA177 LEU178 SER179 LEU180 GLU181 ASN188 THR189 THR190 GLU191 GLN192 VAL193 ILE194 LEU195 SER196 LYS197 ILE198 GLU199 GLU200 SER201 LEU202 LYS203 ASN204 ALA205 GLN206 LYS207 PRO208 VAL209 VAL210 ILE211 ALA212 GLY213 HIS214 GLU215 VAL216 ILE217 SER218 PHE219 GLY220 LEU221 GLU222 LYS223 THR224 VAL225 THR226 GLN227 PHE228 VAL229 SER230 GLU231 THR232 LYS233 LEU234 PRO235 ILE236 THR237 THR238 LEU239 ASN240 PHE241 GLY242 LYS243 SER244 ALA245 VAL246 ASP247 GLU248 SER249 LEU250 PRO251 SER252 PHE253 LEU254 GLY255 ILE256 TYR257 ASN258 GLY259 LYS260 LEU261 SER262 GLU263 ILE264 SER265 LEU266 LYS267 ASN268 PHE269 VAL270 GLU271 SER272 ALA273 ASP274 PHE275 ILE276 LEU277 MET278 LEU279 GLY280 VAL281 LYS282 LEU283 THR284 ASP285 SER286 SER287 THR288 GLY289 ALA290 PHE291 THR292 HIS293 HIS294 LEU295 ASP296 GLU297 ASN298 LYS299 MET300 ILE301 SER302 LEU303 ASN304 ILE305 ASP306 GLU307 GLY308 ILE309 ILE310 PHE311 ASN312 LYS313 VAL314 VAL315 GLU316 ASP317 PHE318 ASP319 PHE320 ARG321 ALA322 VAL323 VAL324 SER325 SER326 LEU327 SER328 GLU329 LEU330 LYS331 GLY332 ILE333 GLU334 TYR335 GLU336 GLY337 GLN338 TYR339 ILE340 ASP341 LYS342 GLU345 GLU346 PHE347 ILE348 PRO349 SER350 SER351 ALA352 PRO353 LEU354 SER355 GLN356 ASP357 ARG358 LEU359 TRP360 GLN361 ALA362 VAL363 GLU364 SER365 LEU366 THR367 GLN368 SER369 ASN370 GLU371 THR372 ILE373 VAL374 ALA375 GLU376 GLN377 GLY378 THR379 SER380 PHE381 PHE382 GLY383 ALA384 SER385 THR386 ILE387 PHE388 LEU389 LYS390 SER391 ASN392 SER393 ARG394 PHE395 ILE396 GLY397 GLN398 PRO399 LEU400 TRP401 GLY402 SER403 ILE404 GLY405 TYR406 THR407 PHE408 PRO409 ALA410 ALA411 LEU412 GLY413 SER414 GLN415 ILE416 ALA417 ASP418 LYS419 GLU420 SER421 ARG422 HIS423 LEU424 LEU425 PHE426 ILE427 GLY428 ASP429 GLY430 SER431 LEU432 GLN433 LEU434 THR435 VAL436 GLN437 GLU438 LEU439 GLY440 LEU441 SER442 ILE443 ARG444 GLU445 LYS446 LEU447 ASN448 PRO449 ILE450 CYS451 PHE452 ILE453 ILE454 ASN455 ASN456 ASP457 GLY458 TYR459 THR460 VAL461 GLU462 ARG463 GLU464 ILE465 HIS466 GLY467 PRO468 THR469 GLN470 SER471 TYR472 ASN473 ASP474 ILE475 PRO476 MET477 TRP478 ASN479 TYR480 SER481 LYS482 LEU483 PRO484 GLU485 THR486 PHE487 GLY488 ALA489 THR490 GLU491 ASP492 ARG493 VAL494 VAL495 SER496 LYS497 ILE498 VAL499 ARG500 THR501 GLU502 ASN503 GLU504 PHE505 VAL506 SER507 VAL508 MET509 LYS510 GLU511 ALA512 GLN513 ALA514 ASP515 VAL516 ASN517 ARG518 MET519 TYR520 TRP521 ILE522 GLU523 LEU524 VAL525 LEU526 GLU527 LYS528 GLU529 ASP530 ALA531 PRO532 LYS533 LEU534 LEU535 LYS536 LYS537 MET538 GLY539 LYS540 LEU541 PHE542 ALA543 GLU544 GLN545 ASN546 LYS547
Ligands
Unit 3 MG1548 R1T1549
Unit 4 MG1548 R1T1549
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany