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Sequence, Chains, Asymmetric and Biological Units

Title COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4- DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
Keywords DNA-DIRECTED DNA POLYMERASE, P2 DNA POLYMERASE IV, NUCLEOTIDYLTRANSFERASE, MUTATOR PROTEIN, DNA REPLICATION, 4-DIFLUOROTOLUENE, DNA REPAIR, DNA-BINDING, TRANSFERASE, METAL-BINDING, TRANSLESION DNA POLYMERASE, DDCTP, CYTOPLASM, MAGNESIUM, DNA DAMAGE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2V9W     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE IV  A 344 2758 0
2  Protein   DNA POLYMERASE IV  B 343 2753 0
3  Other macromolecule   5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3'  C 13 275 0
4  Other macromolecule   5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP  *TP*TP*CP*CP*CP*CP*C)-3'  D 18 335 20
5  Other macromolecule   5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3'  E 13 275 0
6  Other macromolecule   5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP  *TP*TP*CP*CP*CP*CP*C)-3'  F 16 299 20
7  Ligand   DNA POLYMERASE IV  A 3 0 29
8  Ligand   DNA POLYMERASE IV  B 3 0 29
9 Water     157 0 157
total       910 6695 255

Proteins
Unit 1 MET1 ILE2 VAL3 LEU4 PHE5 VAL6 ASP7 PHE8 ASP9 TYR10 PHE11 TYR12 ALA13 GLN14 VAL15 GLU16 GLU17 VAL18 LEU19 ASN20 PRO21 SER22 LEU23 LYS24 GLY25 LYS26 PRO27 VAL28 VAL29 VAL30 CYS31 VAL32 PHE33 SER34 GLY35 ARG36 PHE37 GLU38 ASP39 SER40 GLY41 ALA42 VAL43 ALA44 THR45 ALA46 ASN47 TYR48 GLU49 ALA50 ARG51 LYS52 PHE53 GLY54 VAL55 LYS56 ALA57 GLY58 ILE59 PRO60 ILE61 VAL62 GLU63 ALA64 LYS65 LYS66 ILE67 LEU68 PRO69 ASN70 ALA71 VAL72 TYR73 LEU74 PRO75 MET76 ARG77 LYS78 GLU79 VAL80 TYR81 GLN82 GLN83 VAL84 SER85 SER86 ARG87 ILE88 MET89 ASN90 LEU91 LEU92 ARG93 GLU94 TYR95 SER96 GLU97 LYS98 ILE99 GLU100 ILE101 ALA102 SER103 ILE104 ASP105 GLU106 ALA107 TYR108 LEU109 ASP110 ILE111 SER112 ASP113 LYS114 VAL115 ARG116 ASP117 TYR118 ARG119 GLU120 ALA121 TYR122 ASN123 LEU124 GLY125 LEU126 GLU127 ILE128 LYS129 ASN130 LYS131 ILE132 LEU133 GLU134 LYS135 GLU136 LYS137 ILE138 THR139 VAL140 THR141 VAL142 GLY143 ILE144 SER145 LYS146 ASN147 LYS148 VAL149 PHE150 ALA151 LYS152 ILE153 ALA154 ALA155 ASP156 MET157 ALA158 LYS159 PRO160 ASN161 GLY162 ILE163 LYS164 VAL165 ILE166 ASP167 ASP168 GLU169 GLU170 VAL171 LYS172 ARG173 LEU174 ILE175 ARG176 GLU177 LEU178 ASP179 ILE180 ALA181 ASP182 VAL183 PRO184 GLY185 ILE186 GLY187 ASN188 ILE189 THR190 ALA191 GLU192 LYS193 LEU194 LYS195 LYS196 LEU197 GLY198 ILE199 ASN200 LYS201 LEU202 VAL203 ASP204 THR205 LEU206 SER207 ILE208 GLU209 PHE210 ASP211 LYS212 LEU213 LYS214 GLY215 MET216 ILE217 GLY218 GLU219 ALA220 LYS221 ALA222 LYS223 TYR224 LEU225 ILE226 SER227 LEU228 ALA229 ARG230 ASP231 GLU232 TYR233 ASN234 GLU235 PRO236 ILE237 ARG238 THR239 ARG240 VAL241 ARG242 LYS243 SER244 ILE245 GLY246 ARG247 ILE248 VAL249 THR250 MET251 LYS252 ARG253 ASN254 SER255 ARG256 ASN257 LEU258 GLU259 GLU260 ILE261 LYS262 PRO263 TYR264 LEU265 PHE266 ARG267 ALA268 ILE269 GLU270 GLU271 SER272 TYR273 TYR274 LYS275 LEU276 ASP277 LYS278 ARG279 ILE280 PRO281 LYS282 ALA283 ILE284 HIS285 VAL286 VAL287 ALA288 VAL289 THR290 GLU291 ASP292 LEU293 ASP294 ILE295 VAL296 SER297 ARG298 GLY299 ARG300 THR301 PHE302 PRO303 HIS304 GLY305 ILE306 SER307 LYS308 GLU309 THR310 ALA311 TYR312 SER313 GLU314 SER315 VAL316 LYS317 LEU318 LEU319 GLN320 LYS321 ILE322 LEU323 GLU324 GLU325 ASP326 GLU327 ARG328 LYS329 ILE330 ARG331 ARG332 ILE333 GLY334 VAL335 ARG336 PHE337 SER338 LYS339 PHE340 ILE341 GLU342 ALA343 ILE344
Unit 2 MET1 ILE2 VAL3 LEU4 PHE5 VAL6 ASP7 PHE8 ASP9 TYR10 PHE11 TYR12 ALA13 GLN14 VAL15 GLU16 GLU17 VAL18 LEU19 ASN20 PRO21 SER22 LEU23 LYS24 GLY25 LYS26 PRO27 VAL28 VAL29 VAL30 CYS31 VAL32 PHE33 SER34 GLY35 ARG36 PHE37 GLU38 ASP39 SER40 GLY41 ALA42 VAL43 ALA44 THR45 ALA46 ASN47 TYR48 GLU49 ALA50 ARG51 LYS52 PHE53 GLY54 VAL55 LYS56 ALA57 GLY58 ILE59 PRO60 ILE61 VAL62 GLU63 ALA64 LYS65 LYS66 ILE67 LEU68 PRO69 ASN70 ALA71 VAL72 TYR73 LEU74 PRO75 MET76 ARG77 LYS78 GLU79 VAL80 TYR81 GLN82 GLN83 VAL84 SER85 SER86 ARG87 ILE88 MET89 ASN90 LEU91 LEU92 ARG93 GLU94 TYR95 SER96 GLU97 LYS98 ILE99 GLU100 ILE101 ALA102 SER103 ILE104 ASP105 GLU106 ALA107 TYR108 LEU109 ASP110 ILE111 SER112 ASP113 LYS114 VAL115 ARG116 ASP117 TYR118 ARG119 GLU120 ALA121 TYR122 ASN123 LEU124 GLY125 LEU126 GLU127 ILE128 LYS129 ASN130 LYS131 ILE132 LEU133 GLU134 LYS135 GLU136 LYS137 ILE138 THR139 VAL140 THR141 VAL142 GLY143 ILE144 SER145 LYS146 ASN147 LYS148 VAL149 PHE150 ALA151 LYS152 ILE153 ALA154 ALA155 ASP156 MET157 ALA158 LYS159 PRO160 ASN161 GLY162 ILE163 LYS164 VAL165 ILE166 ASP167 ASP168 GLU169 GLU170 VAL171 LYS172 ARG173 LEU174 ILE175 ARG176 GLU177 LEU178 ASP179 ILE180 ALA181 ASP182 VAL183 PRO184 GLY185 ILE186 GLY187 ASN188 ILE189 THR190 ALA191 GLU192 LYS193 LEU194 LYS195 LYS196 LEU197 GLY198 ILE199 ASN200 LYS201 LEU202 VAL203 ASP204 THR205 LEU206 SER207 ILE208 GLU209 PHE210 ASP211 LYS212 LEU213 LYS214 GLY215 MET216 ILE217 GLY218 GLU219 ALA220 LYS221 ALA222 LYS223 TYR224 LEU225 ILE226 SER227 LEU228 ALA229 ARG230 ASP231 GLU232 TYR233 ASN234 GLU235 PRO236 ILE237 ARG238 THR239 ARG240 VAL241 ARG242 LYS243 SER244 ILE245 GLY246 ARG247 ILE248 VAL249 THR250 MET251 LYS252 ARG253 ASN254 SER255 ARG256 ASN257 LEU258 GLU259 GLU260 ILE261 LYS262 PRO263 TYR264 LEU265 PHE266 ARG267 ALA268 ILE269 GLU270 GLU271 SER272 TYR273 TYR274 LYS275 LEU276 ASP277 LYS278 ARG279 ILE280 PRO281 LYS282 ALA283 ILE284 HIS285 VAL286 VAL287 ALA288 VAL289 THR290 GLU291 ASP292 LEU293 ASP294 ILE295 VAL296 SER297 ARG298 GLY299 ARG300 THR301 PHE302 PRO303 HIS304 GLY305 ILE306 SER307 LYS308 GLU309 THR310 ALA311 TYR312 SER313 GLU314 SER315 VAL316 LYS317 LEU318 LEU319 GLN320 LYS321 ILE322 LEU323 GLU324 GLU325 ASP326 GLU327 ARG328 LYS329 ILE330 ARG331 ARG332 ILE333 GLY334 VAL335 ARG336 PHE337 SER338 LYS339 PHE340 ILE341 GLU342 ALA343

Other macromolecules
Unit 3 DG1 DG2 DG3 DG4 DG5 DA6 DA7 DG8 DG9 DA10 DC11 DT12 DG13
Unit 4 DT1 DT2 DC3 DA4 DG5 DFT6 DA7 DG8 DT9 DC10 DC11 DT12 DT13 DC14 DC15 DC16 DC17 DC18
Unit 5 DG1 DG2 DG3 DG4 DG5 DA6 DA7 DG8 DG9 DA10 DC11 DT12 DG13
Unit 6 DC3 DA4 DG5 DFT6 DA7 DG8 DT9 DC10 DC11 DT12 DT13 DC14 DC15 DC16 DC17 DC18

Ligands
Unit 7 CA1345 CA1346 DCT1347
Unit 8 CA1344 CA1345 DCT1346

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany