2V8I - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF A FAMILY 2 PECTATE LYASE IN A NATIVE FORM
• Keywords: LYASE, PERIPLASM, PECTATE LYASE, BETA-ELIMINATION, PECTIN DEGRADATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2V8I	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PECTATE LYASE	A	543	4324	0
2	Ligand	PECTATE LYASE	A	51	0	51
3	Water			759	0	759
total				1353	4324	810

Proteins

Unit 1

ASP 4 ARG 5 LEU 6 THR 7 VAL 8 VAL 9 LYS 10 GLN 11 TYR 12 VAL 13 ASP 14 ASN 15 VAL 16 LEU 17 ASN 18 LYS 19 ALA 20 SER 21 ASP 22 THR 23 TYR 24 HIS 25 GLY 26 ASP 27 LYS 28 PRO 29 SER 30 PRO 31 LEU 32 LEU 33 ALA 34 ASP 35 GLY 36 VAL 37 ASP 38 PRO 39 ARG 40 THR 41 GLY 42 GLN 43 GLN 44 LEU 45 GLU 46 TRP 47 ILE 48 PHE 49 PRO 50 ASP 51 GLY 52 ARG 53 ARG 54 ALA 55 VAL 56 LEU 57 SER 58 ASN 59 PHE 60 SER 61 ALA 62 GLN 63 GLN 64 ASN 65 LEU 66 MET 67 ARG 68 VAL 69 MET 70 SER 71 GLY 72 LEU 73 SER 74 GLN 75 LEU 76 SER 77 GLY 78 ASP 79 PRO 80 ARG 81 TYR 82 GLN 83 LYS 84 ARG 85 ALA 86 GLU 87 ASP 88 ILE 89 VAL 90 ARG 91 TYR 92 HIS 93 PHE 94 GLN 95 ASN 96 TYR 97 GLN 98 ASP 99 PRO 100 SER 101 GLY 102 LEU 103 LEU 104 TYR 105 TRP 106 GLY 107 GLY 108 HIS 109 ARG 110 PHE 111 VAL 112 ASP 113 LEU 114 LYS 115 THR 116 LEU 117 GLN 118 PRO 119 GLU 120 GLY 121 PRO 122 SER 123 GLU 124 LYS 125 GLU 126 MET 127 VAL 128 HIS 129 GLU 130 LEU 131 LYS 132 ASN 133 ALA 134 TYR 135 PRO 136 TYR 137 TYR 138 ASP 139 LEU 140 MET 141 PHE 142 SER 143 VAL 144 ASP 145 SER 146 ASP 147 ALA 148 THR 149 ALA 150 ARG 151 PHE 152 ILE 153 ARG 154 GLY 155 PHE 156 TRP 157 ASN 158 ALA 159 HIS 160 VAL 161 TYR 162 ASP 163 TRP 164 ARG 165 ILE 166 LEU 167 GLU 168 THR 169 SER 170 ARG 171 HIS 172 GLY 173 GLU 174 TYR 175 GLY 176 LYS 177 PRO 178 MET 179 GLY 180 ALA 181 LEU 182 TRP 183 GLU 184 SER 185 LYS 186 PHE 187 GLU 188 GLN 189 GLN 190 PRO 191 PRO 192 PHE 193 PHE 194 ALA 195 THR 196 LYS 197 GLY 198 LEU 199 SER 200 PHE 201 LEU 202 ASN 203 ALA 204 GLY 205 ASN 206 ASP 207 LEU 208 ILE 209 TYR 210 SER 211 ALA 212 SER 213 LEU 214 LEU 215 TYR 216 LYS 217 HIS 218 GLN 219 GLN 220 ASP 221 GLN 222 GLY 223 ALA 224 LEU 225 THR 226 TRP 227 ALA 228 LYS 229 ARG 230 LEU 231 ALA 232 ASP 233 GLN 234 TYR 235 VAL 236 LEU 237 PRO 238 ARG 239 ASP 240 ALA 241 LYS 242 THR 243 GLY 244 LEU 245 GLY 246 VAL 247 TYR 248 GLN 249 PHE 250 THR 251 GLN 252 ALA 253 LEU 254 LYS 255 ARG 256 GLU 257 GLU 258 PRO 259 THR 260 ASP 261 ASP 262 ALA 263 ASP 264 THR 265 HIS 266 SER 267 LYS 268 PHE 269 GLY 270 ASP 271 ARG 272 ALA 273 GLN 274 ARG 275 GLN 276 PHE 277 GLY 278 PRO 279 GLU 280 PHE 281 GLY 282 PRO 283 THR 284 ALA 285 LEU 286 GLU 287 GLY 288 ASN 289 MET 290 MET 291 LEU 292 LYS 293 GLY 294 ARG 295 THR 296 SER 297 THR 298 LEU 299 TYR 300 SER 301 GLU 302 ASN 303 ALA 304 LEU 305 MET 306 GLN 307 LEU 308 GLN 309 LEU 310 GLY 311 LYS 312 ASP 313 LEU 314 GLY 315 PRO 316 GLN 317 GLY 318 GLN 319 ASP 320 LEU 321 LEU 322 LYS 323 TRP 324 THR 325 VAL 326 ASP 327 GLY 328 LEU 329 LYS 330 ALA 331 PHE 332 ALA 333 LYS 334 TYR 335 ALA 336 TYR 337 ASN 338 ASP 339 GLN 340 ASP 341 ASN 342 THR 343 PHE 344 ARG 345 PRO 346 MET 347 ILE 348 ALA 349 ASN 350 GLY 351 GLN 352 ASP 353 LEU 354 SER 355 ASN 356 TYR 357 THR 358 LEU 359 PRO 360 ARG 361 ASP 362 GLY 363 TYR 364 TYR 365 GLY 366 LYS 367 LYS 368 GLY 369 THR 370 VAL 371 LEU 372 LYS 373 PRO 374 TYR 375 LYS 376 ALA 377 GLY 378 ASN 379 GLU 380 PHE 381 LEU 382 ILE 383 SER 384 TYR 385 ALA 386 ARG 387 ALA 388 TYR 389 ALA 390 ILE 391 ASP 392 ASN 393 ASP 394 PRO 395 LEU 396 LEU 397 TRP 398 LYS 399 VAL 400 ALA 401 ARG 402 GLY 403 ILE 404 ALA 405 ASN 406 ASP 407 GLN 408 GLY 409 LEU 410 GLY 411 ASP 412 ILE 413 GLY 414 THR 415 ALA 416 PRO 417 GLY 418 LYS 419 GLU 420 VAL 421 LYS 422 VAL 423 ASN 424 MET 425 ASP 426 THR 427 THR 428 ASN 429 SER 430 ASP 431 PRO 432 TYR 433 ALA 434 LEU 435 PHE 436 ALA 437 LEU 438 LEU 439 ASP 440 LEU 441 TYR 442 HIS 443 ALA 444 SER 445 GLN 446 VAL 447 ALA 448 ASP 449 TYR 450 ARG 451 LYS 452 LEU 453 ALA 454 GLU 455 LYS 456 ILE 457 GLY 458 ASP 459 ASN 460 ILE 461 ILE 462 LYS 463 ILE 464 ARG 465 TYR 466 ILE 467 ASP 468 GLY 469 PHE 470 PHE 471 MET 472 ALA 473 SER 474 SER 475 ASP 476 ARG 477 GLN 478 TYR 479 ALA 480 ASP 481 VAL 482 ASP 483 ALA 484 ILE 485 GLU 486 PRO 487 TYR 488 ALA 489 LEU 490 LEU 491 ALA 492 LEU 493 GLU 494 ALA 495 SER 496 LEU 497 ARG 498 ASN 499 LYS 500 PRO 501 GLN 502 ALA 503 VAL 504 ALA 505 PRO 506 PHE 507 LEU 508 ASN 509 GLY 510 ALA 511 GLY 512 PHE 513 THR 514 GLU 515 GLY 516 ALA 517 TYR 518 ARG 519 MET 520 ASP 521 ASP 522 GLY 523 SER 524 ALA 525 ARG 526 VAL 527 SER 528 THR 529 ARG 530 ASP 531 ASN 532 GLU 533 LEU 534 PHE 535 LEU 536 LEU 537 ASN 538 VAL 539 GLY 540 GLU 541 LYS 542 LEU 543 GLN 544 PRO 545 ASN 546

Ligands

Unit 2

IOD 1547 IOD 1548 IOD 1549 IOD 1550 IOD 1551 IOD 1552 IOD 1553 IOD 1554 IOD 1555 IOD 1556 IOD 1557 IOD 1558 IOD 1559 IOD 1560 IOD 1561 IOD 1562 IOD 1563 IOD 1564 IOD 1565 IOD 1566 IOD 1567 IOD 1568 IOD 1569 IOD 1570 IOD 1571 IOD 1572 IOD 1573 IOD 1574 IOD 1575 IOD 1576 IOD 1577 IOD 1578 IOD 1579 IOD 1580 IOD 1581 IOD 1582 IOD 1583 IOD 1584 IOD 1585 IOD 1586 IOD 1587 IOD 1588 IOD 1589 IOD 1590 IOD 1591 IOD 1592 IOD 1593 IOD 1594 IOD 1595 IOD 1596 IOD 1597