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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A MONOCLONAL ANTIBODY DIRECTED AGAINST AN ANTIGENIC DETERMINANT COMMON TO OGAWA AND INABA SEROTYPES OF VIBRIO CHOLERAE O1
Keywords FAB FRAGMENT, MONOCLONAL ANTIBODY, IMMUNE SYSTEM, IMMUNOGLOB DOMAIN, IMMUNOGLOBULIN C REGION, ANTI-LPS VIBRIO CHOLERAE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2UYL     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MONOCLONAL ANTIBODY F-22-30  A 218 1676 0
2  Protein   MONOCLONAL ANTIBODY F-22-30  B 213 1596 0
3  Protein   MONOCLONAL ANTIBODY F-22-30  M 216 1659 0
4  Protein   MONOCLONAL ANTIBODY F-22-30  N 213 1596 0
5  Protein   MONOCLONAL ANTIBODY F-22-30  V 216 1669 0
6  Protein   MONOCLONAL ANTIBODY F-22-30  W 213 1596 0
7  Protein   MONOCLONAL ANTIBODY F-22-30  X 216 1669 0
8  Protein   MONOCLONAL ANTIBODY F-22-30  Y 213 1596 0
total       1718 13057 0

Proteins
Unit 1 GLU1 LEU2 VAL3 MET4 THR5 GLN6 THR7 PRO8 PRO9 SER10 LEU11 PRO12 VAL13 SER14 LEU15 GLY16 ASP17 GLN18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER28 ILE29 VAL30 HIS31 SER32 ASN33 GLY34 ASP35 THR36 TYR37 LEU38 GLU39 TRP40 TYR41 LEU42 GLN43 LYS44 PRO45 GLY46 GLN47 SER48 PRO49 LYS50 LEU51 LEU52 ILE53 TYR54 LYS55 VAL56 SER57 ASN58 ARG59 PHE60 SER61 GLY62 VAL63 PRO64 ASP65 ARG66 PHE67 SER68 GLY69 SER70 GLY71 SER72 GLY73 THR74 ASP75 PHE76 THR77 LEU78 GLU79 ILE80 SER81 ARG82 VAL83 GLU84 ALA85 GLU86 ASP87 LEU88 GLY89 VAL90 TYR91 TYR92 CYS93 PHE94 GLN95 GLY96 SER97 HIS98 VAL99 PRO100 ARG101 THR102 PHE103 GLY104 GLY105 GLY106 THR107 LYS108 LEU109 GLU110 ILE111 LYS112 ARG113 ALA114 ASP115 ALA116 ALA117 PRO118 THR119 VAL120 SER121 ILE122 PHE123 PRO124 PRO125 SER126 SER127 GLU128 GLN129 LEU130 THR131 SER132 GLY133 GLY134 ALA135 SER136 VAL137 VAL138 CYS139 PHE140 LEU141 ASN142 ASN143 PHE144 TYR145 PRO146 LYS147 ASP148 ILE149 ASN150 VAL151 LYS152 TRP153 LYS154 ILE155 ASP156 GLY157 SER158 GLU159 ARG160 GLN161 ASN162 GLY163 VAL164 LEU165 ASN166 SER167 TRP168 THR169 ASP170 GLN171 ASP172 SER173 LYS174 ASP175 SER176 THR177 TYR178 SER179 MET180 SER181 SER182 THR183 LEU184 THR185 LEU186 THR187 LYS188 ASP189 GLU190 TYR191 GLU192 ARG193 HIS194 ASN195 SER196 TYR197 THR198 CYS199 GLU200 ALA201 THR202 HIS203 LYS204 THR205 SER206 THR207 SER208 PRO209 ILE210 VAL211 LYS212 SER213 PHE214 ASN215 ARG216 ASN217 GLU218
Unit 2 GLN1 VAL2 GLN3 LEU4 GLU5 GLN6 PRO7 GLY8 ALA9 GLU10 LEU11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 THR28 PHE29 THR30 SER31 ASN32 TRP33 ILE34 ASN35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 HIS50 ILE51 SER52 PRO53 GLY54 SER55 SER56 SER57 THR58 ASN59 TYR60 ASN61 GLU62 LYS63 PHE64 LYS65 SER66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 THR74 SER75 SER76 SER77 THR78 ALA79 TYR80 MET81 GLN82 LEU83 SER84 SER85 LEU86 THR87 SER88 ASP89 ASP90 SER91 ALA92 VAL93 TYR94 TYR95 CYS96 GLY97 ARG98 GLU99 GLU100 THR101 VAL102 ARG103 ALA104 SER105 PHE106 GLY107 ASN108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 ALA119 ALA120 LYS121 THR122 THR123 PRO124 PRO125 SER126 VAL127 TYR128 PRO129 LEU130 ALA131 PRO132 SER140 MET141 VAL142 THR143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 GLY150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 THR159 TRP160 ASN161 SER162 GLY163 SER164 LEU165 SER166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 ASP179 LEU180 TYR181 THR182 LEU183 SER184 SER185 SER186 VAL187 THR188 VAL189 PRO190 SER191 SER192 THR193 TRP194 PRO195 SER196 GLN197 THR198 VAL199 THR200 CYS201 ASN202 VAL203 ALA204 HIS205 PRO206 ALA207 SER208 SER209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 ILE216 VAL217 PRO218 ARG219 ASP220
Unit 3 GLU1 LEU2 VAL3 MET4 THR5 GLN6 THR7 PRO8 PRO9 SER10 LEU11 PRO12 VAL13 SER14 LEU15 GLY16 ASP17 GLN18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER28 ILE29 VAL30 HIS31 SER32 ASN33 GLY34 ASP35 THR36 TYR37 LEU38 GLU39 TRP40 TYR41 LEU42 GLN43 LYS44 PRO45 GLY46 GLN47 SER48 PRO49 LYS50 LEU51 LEU52 ILE53 TYR54 LYS55 VAL56 SER57 ASN58 ARG59 PHE60 SER61 GLY62 VAL63 PRO64 ASP65 ARG66 PHE67 SER68 GLY69 SER70 GLY71 SER72 GLY73 THR74 ASP75 PHE76 THR77 LEU78 GLU79 ILE80 SER81 ARG82 VAL83 GLU84 ALA85 GLU86 ASP87 LEU88 GLY89 VAL90 TYR91 TYR92 CYS93 PHE94 GLN95 GLY96 SER97 HIS98 VAL99 PRO100 ARG101 THR102 PHE103 GLY104 GLY105 GLY106 THR107 LYS108 LEU109 GLU110 ILE111 LYS112 ARG113 ALA114 ASP115 ALA116 ALA117 PRO118 THR119 VAL120 SER121 ILE122 PHE123 PRO124 PRO125 SER126 SER127 GLU128 GLN129 LEU130 THR131 SER132 GLY133 GLY134 ALA135 SER136 VAL137 VAL138 CYS139 PHE140 LEU141 ASN142 ASN143 PHE144 TYR145 PRO146 LYS147 ASP148 ILE149 ASN150 VAL151 LYS152 TRP153 LYS154 ILE155 ASP156 GLY157 SER158 GLU159 ARG160 GLN161 ASN162 GLY163 VAL164 LEU165 ASN166 SER167 TRP168 THR169 ASP170 GLN171 ASP172 SER173 LYS174 ASP175 SER176 THR177 TYR178 SER179 MET180 SER181 SER182 THR183 LEU184 THR185 LEU186 THR187 LYS188 ASP189 GLU190 TYR191 GLU192 ARG193 HIS194 ASN195 SER196 TYR197 THR198 CYS199 GLU200 ALA201 THR202 HIS203 LYS204 THR205 SER206 THR207 SER208 PRO209 ILE210 VAL211 LYS212 SER213 PHE214 ASN215 ARG216
Unit 4 GLN1 VAL2 GLN3 LEU4 GLU5 GLN6 PRO7 GLY8 ALA9 GLU10 LEU11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 THR28 PHE29 THR30 SER31 ASN32 TRP33 ILE34 ASN35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 HIS50 ILE51 SER52 PRO53 GLY54 SER55 SER56 SER57 THR58 ASN59 TYR60 ASN61 GLU62 LYS63 PHE64 LYS65 SER66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 THR74 SER75 SER76 SER77 THR78 ALA79 TYR80 MET81 GLN82 LEU83 SER84 SER85 LEU86 THR87 SER88 ASP89 ASP90 SER91 ALA92 VAL93 TYR94 TYR95 CYS96 GLY97 ARG98 GLU99 GLU100 THR101 VAL102 ARG103 ALA104 SER105 PHE106 GLY107 ASN108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 ALA119 ALA120 LYS121 THR122 THR123 PRO124 PRO125 SER126 VAL127 TYR128 PRO129 LEU130 ALA131 PRO132 SER140 MET141 VAL142 THR143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 GLY150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 THR159 TRP160 ASN161 SER162 GLY163 SER164 LEU165 SER166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 ASP179 LEU180 TYR181 THR182 LEU183 SER184 SER185 SER186 VAL187 THR188 VAL189 PRO190 SER191 SER192 THR193 TRP194 PRO195 SER196 GLN197 THR198 VAL199 THR200 CYS201 ASN202 VAL203 ALA204 HIS205 PRO206 ALA207 SER208 SER209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 ILE216 VAL217 PRO218 ARG219 ASP220
Unit 5 GLU1 LEU2 VAL3 MET4 THR5 GLN6 THR7 PRO8 PRO9 SER10 LEU11 PRO12 VAL13 SER14 LEU15 GLY16 ASP17 GLN18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER28 ILE29 VAL30 HIS31 SER32 ASN33 GLY34 ASP35 THR36 TYR37 LEU38 GLU39 TRP40 TYR41 LEU42 GLN43 LYS44 PRO45 GLY46 GLN47 SER48 PRO49 LYS50 LEU51 LEU52 ILE53 TYR54 LYS55 VAL56 SER57 ASN58 ARG59 PHE60 SER61 GLY62 VAL63 PRO64 ASP65 ARG66 PHE67 SER68 GLY69 SER70 GLY71 SER72 GLY73 THR74 ASP75 PHE76 THR77 LEU78 GLU79 ILE80 SER81 ARG82 VAL83 GLU84 ALA85 GLU86 ASP87 LEU88 GLY89 VAL90 TYR91 TYR92 CYS93 PHE94 GLN95 GLY96 SER97 HIS98 VAL99 PRO100 ARG101 THR102 PHE103 GLY104 GLY105 GLY106 THR107 LYS108 LEU109 GLU110 ILE111 LYS112 ARG113 ALA114 ASP115 ALA116 ALA117 PRO118 THR119 VAL120 SER121 ILE122 PHE123 PRO124 PRO125 SER126 SER127 GLU128 GLN129 LEU130 THR131 SER132 GLY133 GLY134 ALA135 SER136 VAL137 VAL138 CYS139 PHE140 LEU141 ASN142 ASN143 PHE144 TYR145 PRO146 LYS147 ASP148 ILE149 ASN150 VAL151 LYS152 TRP153 LYS154 ILE155 ASP156 GLY157 SER158 GLU159 ARG160 GLN161 ASN162 GLY163 VAL164 LEU165 ASN166 SER167 TRP168 THR169 ASP170 GLN171 ASP172 SER173 LYS174 ASP175 SER176 THR177 TYR178 SER179 MET180 SER181 SER182 THR183 LEU184 THR185 LEU186 THR187 LYS188 ASP189 GLU190 TYR191 GLU192 ARG193 HIS194 ASN195 SER196 TYR197 THR198 CYS199 GLU200 ALA201 THR202 HIS203 LYS204 THR205 SER206 THR207 SER208 PRO209 ILE210 VAL211 LYS212 SER213 PHE214 ASN215 ARG216
Unit 6 GLN1 VAL2 GLN3 LEU4 GLU5 GLN6 PRO7 GLY8 ALA9 GLU10 LEU11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 THR28 PHE29 THR30 SER31 ASN32 TRP33 ILE34 ASN35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 HIS50 ILE51 SER52 PRO53 GLY54 SER55 SER56 SER57 THR58 ASN59 TYR60 ASN61 GLU62 LYS63 PHE64 LYS65 SER66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 THR74 SER75 SER76 SER77 THR78 ALA79 TYR80 MET81 GLN82 LEU83 SER84 SER85 LEU86 THR87 SER88 ASP89 ASP90 SER91 ALA92 VAL93 TYR94 TYR95 CYS96 GLY97 ARG98 GLU99 GLU100 THR101 VAL102 ARG103 ALA104 SER105 PHE106 GLY107 ASN108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 ALA119 ALA120 LYS121 THR122 THR123 PRO124 PRO125 SER126 VAL127 TYR128 PRO129 LEU130 ALA131 PRO132 SER140 MET141 VAL142 THR143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 GLY150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 THR159 TRP160 ASN161 SER162 GLY163 SER164 LEU165 SER166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 ASP179 LEU180 TYR181 THR182 LEU183 SER184 SER185 SER186 VAL187 THR188 VAL189 PRO190 SER191 SER192 THR193 TRP194 PRO195 SER196 GLN197 THR198 VAL199 THR200 CYS201 ASN202 VAL203 ALA204 HIS205 PRO206 ALA207 SER208 SER209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 ILE216 VAL217 PRO218 ARG219 ASP220
Unit 7 GLU1 LEU2 VAL3 MET4 THR5 GLN6 THR7 PRO8 PRO9 SER10 LEU11 PRO12 VAL13 SER14 LEU15 GLY16 ASP17 GLN18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER28 ILE29 VAL30 HIS31 SER32 ASN33 GLY34 ASP35 THR36 TYR37 LEU38 GLU39 TRP40 TYR41 LEU42 GLN43 LYS44 PRO45 GLY46 GLN47 SER48 PRO49 LYS50 LEU51 LEU52 ILE53 TYR54 LYS55 VAL56 SER57 ASN58 ARG59 PHE60 SER61 GLY62 VAL63 PRO64 ASP65 ARG66 PHE67 SER68 GLY69 SER70 GLY71 SER72 GLY73 THR74 ASP75 PHE76 THR77 LEU78 GLU79 ILE80 SER81 ARG82 VAL83 GLU84 ALA85 GLU86 ASP87 LEU88 GLY89 VAL90 TYR91 TYR92 CYS93 PHE94 GLN95 GLY96 SER97 HIS98 VAL99 PRO100 ARG101 THR102 PHE103 GLY104 GLY105 GLY106 THR107 LYS108 LEU109 GLU110 ILE111 LYS112 ARG113 ALA114 ASP115 ALA116 ALA117 PRO118 THR119 VAL120 SER121 ILE122 PHE123 PRO124 PRO125 SER126 SER127 GLU128 GLN129 LEU130 THR131 SER132 GLY133 GLY134 ALA135 SER136 VAL137 VAL138 CYS139 PHE140 LEU141 ASN142 ASN143 PHE144 TYR145 PRO146 LYS147 ASP148 ILE149 ASN150 VAL151 LYS152 TRP153 LYS154 ILE155 ASP156 GLY157 SER158 GLU159 ARG160 GLN161 ASN162 GLY163 VAL164 LEU165 ASN166 SER167 TRP168 THR169 ASP170 GLN171 ASP172 SER173 LYS174 ASP175 SER176 THR177 TYR178 SER179 MET180 SER181 SER182 THR183 LEU184 THR185 LEU186 THR187 LYS188 ASP189 GLU190 TYR191 GLU192 ARG193 HIS194 ASN195 SER196 TYR197 THR198 CYS199 GLU200 ALA201 THR202 HIS203 LYS204 THR205 SER206 THR207 SER208 PRO209 ILE210 VAL211 LYS212 SER213 PHE214 ASN215 ARG216
Unit 8 GLN1 VAL2 GLN3 LEU4 GLU5 GLN6 PRO7 GLY8 ALA9 GLU10 LEU11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 THR28 PHE29 THR30 SER31 ASN32 TRP33 ILE34 ASN35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 HIS50 ILE51 SER52 PRO53 GLY54 SER55 SER56 SER57 THR58 ASN59 TYR60 ASN61 GLU62 LYS63 PHE64 LYS65 SER66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 THR74 SER75 SER76 SER77 THR78 ALA79 TYR80 MET81 GLN82 LEU83 SER84 SER85 LEU86 THR87 SER88 ASP89 ASP90 SER91 ALA92 VAL93 TYR94 TYR95 CYS96 GLY97 ARG98 GLU99 GLU100 THR101 VAL102 ARG103 ALA104 SER105 PHE106 GLY107 ASN108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 ALA119 ALA120 LYS121 THR122 THR123 PRO124 PRO125 SER126 VAL127 TYR128 PRO129 LEU130 ALA131 PRO132 SER140 MET141 VAL142 THR143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 GLY150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 THR159 TRP160 ASN161 SER162 GLY163 SER164 LEU165 SER166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 ASP179 LEU180 TYR181 THR182 LEU183 SER184 SER185 SER186 VAL187 THR188 VAL189 PRO190 SER191 SER192 THR193 TRP194 PRO195 SER196 GLN197 THR198 VAL199 THR200 CYS201 ASN202 VAL203 ALA204 HIS205 PRO206 ALA207 SER208 SER209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 ILE216 VAL217 PRO218 ARG219 ASP220

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany