2TMD - Sequence, Chains, Asymmetric and Biological Units

• Title: CORRELATION OF X-RAY DEDUCED AND EXPERIMENTAL AMINO ACID SEQ TRIMETHYLAMINE DEHYDROGENASE
• Keywords: OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2TMD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRIMETHYLAMINE DEHYDROGENASE	A	729	5741	0
2	Protein	TRIMETHYLAMINE DEHYDROGENASE	B	729	5741	0
3	Ligand	TRIMETHYLAMINE DEHYDROGENASE	A	3	0	66
4	Ligand	TRIMETHYLAMINE DEHYDROGENASE	B	3	0	66
5	Water			581	0	581
total				2045	11482	713

Proteins

Unit 1

ALA 1 ARG 2 ASP 3 PRO 4 LYS 5 HIS 6 ASP 7 ILE 8 LEU 9 PHE 10 GLU 11 PRO 12 ILE 13 GLN 14 ILE 15 GLY 16 PRO 17 LYS 18 THR 19 LEU 20 ARG 21 ASN 22 ARG 23 PHE 24 TYR 25 GLN 26 VAL 27 PRO 28 HIS 29 CYS 30 ILE 31 GLY 32 ALA 33 GLY 34 SER 35 ASP 36 LYS 37 PRO 38 GLY 39 PHE 40 GLN 41 SER 42 ALA 43 HIS 44 ARG 45 SER 46 VAL 47 LYS 48 ALA 49 GLU 50 GLY 51 GLY 52 TRP 53 ALA 54 ALA 55 LEU 56 ASN 57 THR 58 GLU 59 TYR 60 CYS 61 SER 62 ILE 63 ASN 64 PRO 65 GLU 66 SER 67 ASP 68 ASP 69 THR 70 HIS 71 ARG 72 LEU 73 SER 74 ALA 75 ARG 76 ILE 77 TRP 78 ASP 79 GLU 80 GLY 81 ASP 82 VAL 83 ARG 84 ASN 85 LEU 86 LYS 87 ALA 88 MET 89 THR 90 ASP 91 GLU 92 VAL 93 HIS 94 LYS 95 TYR 96 GLY 97 ALA 98 LEU 99 ALA 100 GLY 101 VAL 102 GLU 103 LEU 104 TRP 105 TYR 106 GLY 107 GLY 108 ALA 109 HIS 110 ALA 111 PRO 112 ASN 113 MET 114 GLU 115 SER 116 ARG 117 ALA 118 THR 119 PRO 120 ARG 121 GLY 122 PRO 123 SER 124 GLN 125 TYR 126 ALA 127 SER 128 GLU 129 PHE 130 GLU 131 THR 132 LEU 133 SER 134 TYR 135 CYS 136 LYS 137 GLU 138 MET 139 ASP 140 LEU 141 SER 142 ASP 143 ILE 144 ALA 145 GLN 146 VAL 147 GLN 148 GLN 149 PHE 150 TYR 151 VAL 152 ASP 153 ALA 154 ALA 155 LYS 156 ARG 157 SER 158 ARG 159 ASP 160 ALA 161 GLY 162 PHE 163 ASP 164 ILE 165 VAL 166 TYR 167 VAL 168 TYR 169 GLY 170 ALA 171 HIS 172 SER 173 TYR 174 LEU 175 PRO 176 LEU 177 GLN 178 PHE 179 LEU 180 ASN 181 PRO 182 TYR 183 TYR 184 ASN 185 LYS 186 ARG 187 THR 188 ASP 189 LYS 190 TYR 191 GLY 192 GLY 193 SER 194 LEU 195 GLU 196 ASN 197 ARG 198 ALA 199 ARG 200 PHE 201 TRP 202 LEU 203 GLU 204 THR 205 LEU 206 GLU 207 LYS 208 VAL 209 LYS 210 HIS 211 ALA 212 VAL 213 GLY 214 SER 215 ASP 216 CYS 217 ALA 218 ILE 219 ALA 220 THR 221 ARG 222 PHE 223 GLY 224 VAL 225 ASP 226 THR 227 VAL 228 TYR 229 GLY 230 PRO 231 GLY 232 GLN 233 ILE 234 GLU 235 ALA 236 GLU 237 VAL 238 ASP 239 GLY 240 GLN 241 LYS 242 PHE 243 VAL 244 GLU 245 MET 246 ALA 247 ASP 248 SER 249 LEU 250 VAL 251 ASP 252 MET 253 TRP 254 ASP 255 ILE 256 THR 257 ILE 258 GLY 259 ASP 260 ILE 261 ALA 262 GLU 263 TRP 264 GLY 265 GLU 266 ASP 267 ALA 268 GLY 269 PRO 270 SER 271 ARG 272 PHE 273 TYR 274 GLN 275 GLN 276 GLY 277 HIS 278 THR 279 ILE 280 PRO 281 TRP 282 VAL 283 LYS 284 LEU 285 VAL 286 LYS 287 GLN 288 VAL 289 SER 290 LYS 291 LYS 292 PRO 293 VAL 294 LEU 295 GLY 296 VAL 297 GLY 298 ARG 299 TYR 300 THR 301 ASP 302 PRO 303 GLU 304 LYS 305 MET 306 ILE 307 GLU 308 ILE 309 VAL 310 THR 311 LYS 312 GLY 313 TYR 314 ALA 315 ASP 316 ILE 317 ILE 318 GLY 319 CYS 320 ALA 321 ARG 322 PRO 323 SER 324 ILE 325 ALA 326 ASP 327 PRO 328 PHE 329 LEU 330 PRO 331 GLN 332 LYS 333 VAL 334 GLU 335 GLN 336 GLY 337 ARG 338 TYR 339 ASP 340 ASP 341 ILE 342 ARG 343 VAL 344 CYS 345 ILE 346 GLY 347 CYS 348 ASN 349 VAL 350 CYS 351 ILE 352 SER 353 ARG 354 TRP 355 GLU 356 ILE 357 GLY 358 GLY 359 PRO 360 PRO 361 MET 362 ILE 363 CYS 364 THR 365 GLN 366 ASN 367 ALA 368 THR 369 ALA 370 GLY 371 GLU 372 GLU 373 TYR 374 ARG 375 ARG 376 GLY 377 TRP 378 HIS 379 PRO 380 GLU 381 LYS 382 PHE 383 ARG 384 GLN 385 THR 386 LYS 387 ASN 388 LYS 389 ASP 390 SER 391 VAL 392 LEU 393 ILE 394 VAL 395 GLY 396 ALA 397 GLY 398 PRO 399 SER 400 GLY 401 SER 402 GLU 403 ALA 404 ALA 405 ARG 406 VAL 407 LEU 408 MET 409 GLU 410 SER 411 GLY 412 TYR 413 THR 414 VAL 415 HIS 416 LEU 417 THR 418 ASP 419 THR 420 ALA 421 GLU 422 LYS 423 ILE 424 GLY 425 GLY 426 HIS 427 LEU 428 ASN 429 GLN 430 VAL 431 ALA 432 ALA 433 LEU 434 PRO 435 GLY 436 LEU 437 GLY 438 GLU 439 TRP 440 SER 441 TYR 442 HIS 443 ARG 444 ASP 445 TYR 446 ARG 447 GLU 448 THR 449 GLN 450 ILE 451 THR 452 LYS 453 LEU 454 LEU 455 LYS 456 LYS 457 ASN 458 LYS 459 GLU 460 SER 461 GLN 462 LEU 463 ALA 464 LEU 465 GLY 466 GLN 467 LYS 468 PRO 469 MET 470 THR 471 ALA 472 ASP 473 ASP 474 VAL 475 LEU 476 GLN 477 TYR 478 GLY 479 ALA 480 ASP 481 LYS 482 VAL 483 ILE 484 ILE 485 ALA 486 THR 487 GLY 488 ALA 489 ARG 490 TRP 491 ASN 492 THR 493 ASP 494 GLY 495 THR 496 ASN 497 CYS 498 LEU 499 THR 500 HIS 501 ASP 502 PRO 503 ILE 504 PRO 505 GLY 506 ALA 507 ASP 508 ALA 509 SER 510 LEU 511 PRO 512 ASP 513 GLN 514 LEU 515 THR 516 PRO 517 GLU 518 GLN 519 VAL 520 MET 521 ASP 522 GLY 523 LYS 524 LYS 525 LYS 526 ILE 527 GLY 528 LYS 529 ARG 530 VAL 531 VAL 532 ILE 533 LEU 534 ASN 535 ALA 536 ASP 537 THR 538 TYR 539 PHE 540 MET 541 ALA 542 PRO 543 SER 544 LEU 545 ALA 546 GLU 547 LYS 548 LEU 549 ALA 550 THR 551 ALA 552 GLY 553 HIS 554 GLU 555 VAL 556 THR 557 ILE 558 VAL 559 SER 560 GLY 561 VAL 562 HIS 563 LEU 564 ALA 565 ASN 566 TYR 567 MET 568 HIS 569 PHE 570 THR 571 LEU 572 GLU 573 TYR 574 PRO 575 ASN 576 MET 577 MET 578 ARG 579 ARG 580 LEU 581 HIS 582 GLU 583 LEU 584 HIS 585 VAL 586 GLU 587 GLU 588 LEU 589 GLY 590 ASP 591 HIS 592 PHE 593 CYS 594 SER 595 ARG 596 ILE 597 GLU 598 PRO 599 GLY 600 ARG 601 MET 602 GLU 603 ILE 604 TYR 605 ASN 606 ILE 607 TRP 608 GLY 609 ASP 610 GLY 611 SER 612 LYS 613 ARG 614 THR 615 TYR 616 ARG 617 GLY 618 PRO 619 GLY 620 VAL 621 SER 622 PRO 623 ARG 624 ASP 625 ALA 626 ASN 627 THR 628 SER 629 HIS 630 ARG 631 TRP 632 ILE 633 GLU 634 PHE 635 ASP 636 SER 637 LEU 638 VAL 639 LEU 640 VAL 641 THR 642 GLY 643 ARG 644 HIS 645 SER 646 GLU 647 CYS 648 THR 649 LEU 650 TRP 651 ASN 652 GLU 653 LEU 654 LYS 655 ALA 656 ARG 657 GLU 658 SER 659 GLU 660 TRP 661 ALA 662 GLU 663 ASN 664 ASP 665 ILE 666 LYS 667 GLY 668 ILE 669 TYR 670 LEU 671 ILE 672 GLY 673 ASP 674 ALA 675 GLU 676 ALA 677 PRO 678 ARG 679 LEU 680 ILE 681 ALA 682 ASP 683 ALA 684 THR 685 PHE 686 THR 687 GLY 688 HIS 689 ARG 690 VAL 691 ALA 692 ARG 693 GLU 694 ILE 695 GLU 696 GLU 697 ALA 698 ASN 699 PRO 700 GLN 701 ILE 702 ALA 703 ILE 704 PRO 705 TYR 706 LYS 707 ARG 708 GLU 709 THR 710 ILE 711 ALA 712 TRP 713 GLY 714 THR 715 PRO 716 HIS 717 MET 718 PRO 719 GLY 720 GLY 721 ASN 722 PHE 723 LYS 724 ILE 725 GLU 726 TYR 727 LYS 728 VAL 729

Unit 2

ALA 1 ARG 2 ASP 3 PRO 4 LYS 5 HIS 6 ASP 7 ILE 8 LEU 9 PHE 10 GLU 11 PRO 12 ILE 13 GLN 14 ILE 15 GLY 16 PRO 17 LYS 18 THR 19 LEU 20 ARG 21 ASN 22 ARG 23 PHE 24 TYR 25 GLN 26 VAL 27 PRO 28 HIS 29 CYS 30 ILE 31 GLY 32 ALA 33 GLY 34 SER 35 ASP 36 LYS 37 PRO 38 GLY 39 PHE 40 GLN 41 SER 42 ALA 43 HIS 44 ARG 45 SER 46 VAL 47 LYS 48 ALA 49 GLU 50 GLY 51 GLY 52 TRP 53 ALA 54 ALA 55 LEU 56 ASN 57 THR 58 GLU 59 TYR 60 CYS 61 SER 62 ILE 63 ASN 64 PRO 65 GLU 66 SER 67 ASP 68 ASP 69 THR 70 HIS 71 ARG 72 LEU 73 SER 74 ALA 75 ARG 76 ILE 77 TRP 78 ASP 79 GLU 80 GLY 81 ASP 82 VAL 83 ARG 84 ASN 85 LEU 86 LYS 87 ALA 88 MET 89 THR 90 ASP 91 GLU 92 VAL 93 HIS 94 LYS 95 TYR 96 GLY 97 ALA 98 LEU 99 ALA 100 GLY 101 VAL 102 GLU 103 LEU 104 TRP 105 TYR 106 GLY 107 GLY 108 ALA 109 HIS 110 ALA 111 PRO 112 ASN 113 MET 114 GLU 115 SER 116 ARG 117 ALA 118 THR 119 PRO 120 ARG 121 GLY 122 PRO 123 SER 124 GLN 125 TYR 126 ALA 127 SER 128 GLU 129 PHE 130 GLU 131 THR 132 LEU 133 SER 134 TYR 135 CYS 136 LYS 137 GLU 138 MET 139 ASP 140 LEU 141 SER 142 ASP 143 ILE 144 ALA 145 GLN 146 VAL 147 GLN 148 GLN 149 PHE 150 TYR 151 VAL 152 ASP 153 ALA 154 ALA 155 LYS 156 ARG 157 SER 158 ARG 159 ASP 160 ALA 161 GLY 162 PHE 163 ASP 164 ILE 165 VAL 166 TYR 167 VAL 168 TYR 169 GLY 170 ALA 171 HIS 172 SER 173 TYR 174 LEU 175 PRO 176 LEU 177 GLN 178 PHE 179 LEU 180 ASN 181 PRO 182 TYR 183 TYR 184 ASN 185 LYS 186 ARG 187 THR 188 ASP 189 LYS 190 TYR 191 GLY 192 GLY 193 SER 194 LEU 195 GLU 196 ASN 197 ARG 198 ALA 199 ARG 200 PHE 201 TRP 202 LEU 203 GLU 204 THR 205 LEU 206 GLU 207 LYS 208 VAL 209 LYS 210 HIS 211 ALA 212 VAL 213 GLY 214 SER 215 ASP 216 CYS 217 ALA 218 ILE 219 ALA 220 THR 221 ARG 222 PHE 223 GLY 224 VAL 225 ASP 226 THR 227 VAL 228 TYR 229 GLY 230 PRO 231 GLY 232 GLN 233 ILE 234 GLU 235 ALA 236 GLU 237 VAL 238 ASP 239 GLY 240 GLN 241 LYS 242 PHE 243 VAL 244 GLU 245 MET 246 ALA 247 ASP 248 SER 249 LEU 250 VAL 251 ASP 252 MET 253 TRP 254 ASP 255 ILE 256 THR 257 ILE 258 GLY 259 ASP 260 ILE 261 ALA 262 GLU 263 TRP 264 GLY 265 GLU 266 ASP 267 ALA 268 GLY 269 PRO 270 SER 271 ARG 272 PHE 273 TYR 274 GLN 275 GLN 276 GLY 277 HIS 278 THR 279 ILE 280 PRO 281 TRP 282 VAL 283 LYS 284 LEU 285 VAL 286 LYS 287 GLN 288 VAL 289 SER 290 LYS 291 LYS 292 PRO 293 VAL 294 LEU 295 GLY 296 VAL 297 GLY 298 ARG 299 TYR 300 THR 301 ASP 302 PRO 303 GLU 304 LYS 305 MET 306 ILE 307 GLU 308 ILE 309 VAL 310 THR 311 LYS 312 GLY 313 TYR 314 ALA 315 ASP 316 ILE 317 ILE 318 GLY 319 CYS 320 ALA 321 ARG 322 PRO 323 SER 324 ILE 325 ALA 326 ASP 327 PRO 328 PHE 329 LEU 330 PRO 331 GLN 332 LYS 333 VAL 334 GLU 335 GLN 336 GLY 337 ARG 338 TYR 339 ASP 340 ASP 341 ILE 342 ARG 343 VAL 344 CYS 345 ILE 346 GLY 347 CYS 348 ASN 349 VAL 350 CYS 351 ILE 352 SER 353 ARG 354 TRP 355 GLU 356 ILE 357 GLY 358 GLY 359 PRO 360 PRO 361 MET 362 ILE 363 CYS 364 THR 365 GLN 366 ASN 367 ALA 368 THR 369 ALA 370 GLY 371 GLU 372 GLU 373 TYR 374 ARG 375 ARG 376 GLY 377 TRP 378 HIS 379 PRO 380 GLU 381 LYS 382 PHE 383 ARG 384 GLN 385 THR 386 LYS 387 ASN 388 LYS 389 ASP 390 SER 391 VAL 392 LEU 393 ILE 394 VAL 395 GLY 396 ALA 397 GLY 398 PRO 399 SER 400 GLY 401 SER 402 GLU 403 ALA 404 ALA 405 ARG 406 VAL 407 LEU 408 MET 409 GLU 410 SER 411 GLY 412 TYR 413 THR 414 VAL 415 HIS 416 LEU 417 THR 418 ASP 419 THR 420 ALA 421 GLU 422 LYS 423 ILE 424 GLY 425 GLY 426 HIS 427 LEU 428 ASN 429 GLN 430 VAL 431 ALA 432 ALA 433 LEU 434 PRO 435 GLY 436 LEU 437 GLY 438 GLU 439 TRP 440 SER 441 TYR 442 HIS 443 ARG 444 ASP 445 TYR 446 ARG 447 GLU 448 THR 449 GLN 450 ILE 451 THR 452 LYS 453 LEU 454 LEU 455 LYS 456 LYS 457 ASN 458 LYS 459 GLU 460 SER 461 GLN 462 LEU 463 ALA 464 LEU 465 GLY 466 GLN 467 LYS 468 PRO 469 MET 470 THR 471 ALA 472 ASP 473 ASP 474 VAL 475 LEU 476 GLN 477 TYR 478 GLY 479 ALA 480 ASP 481 LYS 482 VAL 483 ILE 484 ILE 485 ALA 486 THR 487 GLY 488 ALA 489 ARG 490 TRP 491 ASN 492 THR 493 ASP 494 GLY 495 THR 496 ASN 497 CYS 498 LEU 499 THR 500 HIS 501 ASP 502 PRO 503 ILE 504 PRO 505 GLY 506 ALA 507 ASP 508 ALA 509 SER 510 LEU 511 PRO 512 ASP 513 GLN 514 LEU 515 THR 516 PRO 517 GLU 518 GLN 519 VAL 520 MET 521 ASP 522 GLY 523 LYS 524 LYS 525 LYS 526 ILE 527 GLY 528 LYS 529 ARG 530 VAL 531 VAL 532 ILE 533 LEU 534 ASN 535 ALA 536 ASP 537 THR 538 TYR 539 PHE 540 MET 541 ALA 542 PRO 543 SER 544 LEU 545 ALA 546 GLU 547 LYS 548 LEU 549 ALA 550 THR 551 ALA 552 GLY 553 HIS 554 GLU 555 VAL 556 THR 557 ILE 558 VAL 559 SER 560 GLY 561 VAL 562 HIS 563 LEU 564 ALA 565 ASN 566 TYR 567 MET 568 HIS 569 PHE 570 THR 571 LEU 572 GLU 573 TYR 574 PRO 575 ASN 576 MET 577 MET 578 ARG 579 ARG 580 LEU 581 HIS 582 GLU 583 LEU 584 HIS 585 VAL 586 GLU 587 GLU 588 LEU 589 GLY 590 ASP 591 HIS 592 PHE 593 CYS 594 SER 595 ARG 596 ILE 597 GLU 598 PRO 599 GLY 600 ARG 601 MET 602 GLU 603 ILE 604 TYR 605 ASN 606 ILE 607 TRP 608 GLY 609 ASP 610 GLY 611 SER 612 LYS 613 ARG 614 THR 615 TYR 616 ARG 617 GLY 618 PRO 619 GLY 620 VAL 621 SER 622 PRO 623 ARG 624 ASP 625 ALA 626 ASN 627 THR 628 SER 629 HIS 630 ARG 631 TRP 632 ILE 633 GLU 634 PHE 635 ASP 636 SER 637 LEU 638 VAL 639 LEU 640 VAL 641 THR 642 GLY 643 ARG 644 HIS 645 SER 646 GLU 647 CYS 648 THR 649 LEU 650 TRP 651 ASN 652 GLU 653 LEU 654 LYS 655 ALA 656 ARG 657 GLU 658 SER 659 GLU 660 TRP 661 ALA 662 GLU 663 ASN 664 ASP 665 ILE 666 LYS 667 GLY 668 ILE 669 TYR 670 LEU 671 ILE 672 GLY 673 ASP 674 ALA 675 GLU 676 ALA 677 PRO 678 ARG 679 LEU 680 ILE 681 ALA 682 ASP 683 ALA 684 THR 685 PHE 686 THR 687 GLY 688 HIS 689 ARG 690 VAL 691 ALA 692 ARG 693 GLU 694 ILE 695 GLU 696 GLU 697 ALA 698 ASN 699 PRO 700 GLN 701 ILE 702 ALA 703 ILE 704 PRO 705 TYR 706 LYS 707 ARG 708 GLU 709 THR 710 ILE 711 ALA 712 TRP 713 GLY 714 THR 715 PRO 716 HIS 717 MET 718 PRO 719 GLY 720 GLY 721 ASN 722 PHE 723 LYS 724 ILE 725 GLU 726 TYR 727 LYS 728 VAL 729

Ligands

Unit 3	SF4 801 FMN 802 ADP 803
Unit 4	SF4 801 FMN 802 ADP 803