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Sequence, Chains, Asymmetric and Biological Units

Title PENICILLIUM CITRINUM ALPHA-1,2-MANNOSIDASE IN COMPLEX WITH A ANALOG
Keywords ALTERNATIVE CONFORMATIONS, MODULATION OF ACTIVITY, GLYCOPROT GLYCOSIDASE, HYDROLASE, SECRETED
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2RI9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE  A 475 3725 0
2  Protein   MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE  B 475 3725 0
3  Ligand    C 2 0 28
4  Ligand    D 5 0 61
5  Ligand    E 2 0 28
6  Ligand    F 2 0 22
7  Ligand    G 2 0 28
8  Ligand    H 5 0 61
9  Ligand    I 2 0 28
10  Ligand    J 2 0 22
11  Ligand   MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE  A 3 0 13
12  Ligand   MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE  B 3 0 13
13 Water     717 0 717
total       1695 7450 1021
Proteins
Unit 1 SER1036 ASN1037 GLN1038 ALA1039 LYS1040 ALA1041 ASP1042 ALA1043 VAL1044 LYS1045 GLU1046 ALA1047 PHE1048 GLN1049 HIS1050 ALA1051 TRP1052 ASN1053 GLY1054 TYR1055 MET1056 LYS1057 TYR1058 ALA1059 PHE1060 PRO1061 HIS1062 ASP1063 GLU1064 LEU1065 THR1066 PRO1067 VAL1068 SER1069 ASN1070 GLY1071 HIS1072 ALA1073 ASP1074 SER1075 ARG1076 ASN1077 GLY1078 TRP1079 GLY1080 ALA1081 SER1082 ALA1083 VAL1084 ASP1085 ALA1086 LEU1087 SER1088 THR1089 ALA1090 VAL1091 ILE1092 MET1093 GLY1094 LYS1095 ALA1096 ASP1097 VAL1098 VAL1099 ASN1100 ALA1101 ILE1102 LEU1103 GLU1104 HIS1105 VAL1106 ALA1107 ASP1108 ILE1109 ASP1110 PHE1111 SER1112 LYS1113 THR1114 SER1115 ASP1116 THR1117 VAL1118 SER1119 LEU1120 PHE1121 GLU1122 THR1123 THR1124 ILE1125 ARG1126 TYR1127 LEU1128 ALA1129 GLY1130 MET1131 LEU1132 SER1133 GLY1134 TYR1135 ASP1136 LEU1137 LEU1138 GLN1139 GLY1140 PRO1141 ALA1142 LYS1143 ASN1144 LEU1145 VAL1146 ASP1147 ASN1148 GLN1149 ASP1150 LEU1151 ILE1152 ASP1153 GLY1154 LEU1155 LEU1156 ASP1157 GLN1158 SER1159 ARG1160 ASN1161 LEU1162 ALA1163 ASP1164 VAL1165 LEU1166 LYS1167 PHE1168 ALA1169 PHE1170 ASP1171 THR1172 PRO1173 SER1174 GLY1175 VAL1176 PRO1177 TYR1178 ASN1179 ASN1180 ILE1181 ASN1182 ILE1183 THR1184 SER1185 HIS1186 GLY1187 ASN1188 ASP1189 GLY1190 ALA1191 THR1192 THR1193 ASN1194 GLY1195 LEU1196 ALA1197 VAL1198 THR1199 GLY1200 THR1201 LEU1202 VAL1203 LEU1204 GLU1205 TRP1206 THR1207 ARG1208 LEU1209 SER1210 ASP1211 LEU1212 THR1213 GLY1214 ASP1215 GLU1216 GLU1217 TYR1218 ALA1219 LYS1220 LEU1221 SER1222 GLN1223 LYS1224 ALA1225 GLU1226 SER1227 TYR1228 LEU1229 LEU1230 LYS1231 PRO1232 GLN1233 PRO1234 SER1235 SER1236 SER1237 GLU1238 PRO1239 PHE1240 PRO1241 GLY1242 LEU1243 VAL1244 GLY1245 SER1246 SER1247 ILE1248 ASN1249 ILE1250 ASN1251 ASP1252 GLY1253 GLN1254 PHE1255 ALA1256 ASP1257 SER1258 ARG1259 VAL1260 SER1261 TRP1262 ASN1263 GLY1264 GLY1265 ASP1266 ASP1267 SER1268 PHE1269 TYR1270 GLU1271 TYR1272 LEU1273 ILE1274 LYS1275 MET1276 TYR1277 VAL1278 TYR1279 ASP1280 PRO1281 LYS1282 ARG1283 PHE1284 GLU1285 THR1286 TYR1287 LYS1288 ASP1289 ARG1290 TRP1291 VAL1292 LEU1293 ALA1294 ALA1295 GLU1296 SER1297 THR1298 ILE1299 LYS1300 HIS1301 LEU1302 LYS1303 SER1304 HIS1305 PRO1306 LYS1307 SER1308 ARG1309 PRO1310 ASP1311 LEU1312 THR1313 PHE1314 LEU1315 SER1316 SER1317 TYR1318 SER1319 ASN1320 ARG1321 ASN1322 TYR1323 ASP1324 LEU1325 SER1326 SER1327 GLN1328 HIS1329 LEU1330 THR1331 CYS1332 PHE1333 ASP1334 GLY1335 GLY1336 SER1337 PHE1338 LEU1339 LEU1340 GLY1341 GLY1342 THR1343 VAL1344 LEU1345 ASP1346 ARG1347 GLN1348 ASP1349 PHE1350 ILE1351 ASP1352 PHE1353 GLY1354 LEU1355 GLU1356 LEU1357 VAL1358 ASP1359 GLY1360 CYS1361 GLU1362 ALA1363 THR1364 TYR1365 ASN1366 SER1367 THR1368 LEU1369 THR1370 LYS1371 ILE1372 GLY1373 PRO1374 ASP1375 SER1376 TRP1377 GLY1378 TRP1379 ASP1380 PRO1381 LYS1382 LYS1383 VAL1384 PRO1385 SER1386 ASP1387 GLN1388 LYS1389 GLU1390 PHE1391 TYR1392 GLU1393 LYS1394 ALA1395 GLY1396 PHE1397 TYR1398 ILE1399 SER1400 SER1401 GLY1402 SER1403 TYR1404 VAL1405 LEU1406 ARG1407 PRO1408 GLU1409 VAL1410 ILE1411 GLU1412 SER1413 PHE1414 TYR1415 TYR1416 ALA1417 HIS1418 ARG1419 VAL1420 THR1421 GLY1422 LYS1423 GLU1424 ILE1425 TYR1426 ARG1427 ASP1428 TRP1429 VAL1430 TRP1431 ASN1432 ALA1433 PHE1434 VAL1435 ALA1436 ILE1437 ASN1438 SER1439 THR1440 CYS1441 ARG1442 THR1443 ASP1444 SER1445 GLY1446 PHE1447 ALA1448 ALA1449 VAL1450 SER1451 ASP1452 VAL1453 ASN1454 LYS1455 ALA1456 ASN1457 GLY1458 GLY1459 SER1460 LYS1461 TYR1462 ASP1463 ASN1464 GLN1465 GLU1466 SER1467 PHE1468 LEU1469 PHE1470 ALA1471 GLU1472 VAL1473 MET1474 LYS1475 TYR1476 SER1477 TYR1478 LEU1479 ALA1480 HIS1481 SER1482 GLU1483 ASP1484 ALA1485 ALA1486 TRP1487 GLN1488 VAL1489 GLN1490 LYS1491 GLY1492 GLY1493 LYS1494 ASN1495 THR1496 PHE1497 VAL1498 TYR1499 ASN1500 THR1501 GLU1502 ALA1503 HIS1504 PRO1505 ILE1506 SER1507 VAL1508 ALA1509 ARG1510
Unit 2 SER2036 ASN2037 GLN2038 ALA2039 LYS2040 ALA2041 ASP2042 ALA2043 VAL2044 LYS2045 GLU2046 ALA2047 PHE2048 GLN2049 HIS2050 ALA2051 TRP2052 ASN2053 GLY2054 TYR2055 MET2056 LYS2057 TYR2058 ALA2059 PHE2060 PRO2061 HIS2062 ASP2063 GLU2064 LEU2065 THR2066 PRO2067 VAL2068 SER2069 ASN2070 GLY2071 HIS2072 ALA2073 ASP2074 SER2075 ARG2076 ASN2077 GLY2078 TRP2079 GLY2080 ALA2081 SER2082 ALA2083 VAL2084 ASP2085 ALA2086 LEU2087 SER2088 THR2089 ALA2090 VAL2091 ILE2092 MET2093 GLY2094 LYS2095 ALA2096 ASP2097 VAL2098 VAL2099 ASN2100 ALA2101 ILE2102 LEU2103 GLU2104 HIS2105 VAL2106 ALA2107 ASP2108 ILE2109 ASP2110 PHE2111 SER2112 LYS2113 THR2114 SER2115 ASP2116 THR2117 VAL2118 SER2119 LEU2120 PHE2121 GLU2122 THR2123 THR2124 ILE2125 ARG2126 TYR2127 LEU2128 ALA2129 GLY2130 MET2131 LEU2132 SER2133 GLY2134 TYR2135 ASP2136 LEU2137 LEU2138 GLN2139 GLY2140 PRO2141 ALA2142 LYS2143 ASN2144 LEU2145 VAL2146 ASP2147 ASN2148 GLN2149 ASP2150 LEU2151 ILE2152 ASP2153 GLY2154 LEU2155 LEU2156 ASP2157 GLN2158 SER2159 ARG2160 ASN2161 LEU2162 ALA2163 ASP2164 VAL2165 LEU2166 LYS2167 PHE2168 ALA2169 PHE2170 ASP2171 THR2172 PRO2173 SER2174 GLY2175 VAL2176 PRO2177 TYR2178 ASN2179 ASN2180 ILE2181 ASN2182 ILE2183 THR2184 SER2185 HIS2186 GLY2187 ASN2188 ASP2189 GLY2190 ALA2191 THR2192 THR2193 ASN2194 GLY2195 LEU2196 ALA2197 VAL2198 THR2199 GLY2200 THR2201 LEU2202 VAL2203 LEU2204 GLU2205 TRP2206 THR2207 ARG2208 LEU2209 SER2210 ASP2211 LEU2212 THR2213 GLY2214 ASP2215 GLU2216 GLU2217 TYR2218 ALA2219 LYS2220 LEU2221 SER2222 GLN2223 LYS2224 ALA2225 GLU2226 SER2227 TYR2228 LEU2229 LEU2230 LYS2231 PRO2232 GLN2233 PRO2234 SER2235 SER2236 SER2237 GLU2238 PRO2239 PHE2240 PRO2241 GLY2242 LEU2243 VAL2244 GLY2245 SER2246 SER2247 ILE2248 ASN2249 ILE2250 ASN2251 ASP2252 GLY2253 GLN2254 PHE2255 ALA2256 ASP2257 SER2258 ARG2259 VAL2260 SER2261 TRP2262 ASN2263 GLY2264 GLY2265 ASP2266 ASP2267 SER2268 PHE2269 TYR2270 GLU2271 TYR2272 LEU2273 ILE2274 LYS2275 MET2276 TYR2277 VAL2278 TYR2279 ASP2280 PRO2281 LYS2282 ARG2283 PHE2284 GLU2285 THR2286 TYR2287 LYS2288 ASP2289 ARG2290 TRP2291 VAL2292 LEU2293 ALA2294 ALA2295 GLU2296 SER2297 THR2298 ILE2299 LYS2300 HIS2301 LEU2302 LYS2303 SER2304 HIS2305 PRO2306 LYS2307 SER2308 ARG2309 PRO2310 ASP2311 LEU2312 THR2313 PHE2314 LEU2315 SER2316 SER2317 TYR2318 SER2319 ASN2320 ARG2321 ASN2322 TYR2323 ASP2324 LEU2325 SER2326 SER2327 GLN2328 HIS2329 LEU2330 THR2331 CYS2332 PHE2333 ASP2334 GLY2335 GLY2336 SER2337 PHE2338 LEU2339 LEU2340 GLY2341 GLY2342 THR2343 VAL2344 LEU2345 ASP2346 ARG2347 GLN2348 ASP2349 PHE2350 ILE2351 ASP2352 PHE2353 GLY2354 LEU2355 GLU2356 LEU2357 VAL2358 ASP2359 GLY2360 CYS2361 GLU2362 ALA2363 THR2364 TYR2365 ASN2366 SER2367 THR2368 LEU2369 THR2370 LYS2371 ILE2372 GLY2373 PRO2374 ASP2375 SER2376 TRP2377 GLY2378 TRP2379 ASP2380 PRO2381 LYS2382 LYS2383 VAL2384 PRO2385 SER2386 ASP2387 GLN2388 LYS2389 GLU2390 PHE2391 TYR2392 GLU2393 LYS2394 ALA2395 GLY2396 PHE2397 TYR2398 ILE2399 SER2400 SER2401 GLY2402 SER2403 TYR2404 VAL2405 LEU2406 ARG2407 PRO2408 GLU2409 VAL2410 ILE2411 GLU2412 SER2413 PHE2414 TYR2415 TYR2416 ALA2417 HIS2418 ARG2419 VAL2420 THR2421 GLY2422 LYS2423 GLU2424 ILE2425 TYR2426 ARG2427 ASP2428 TRP2429 VAL2430 TRP2431 ASN2432 ALA2433 PHE2434 VAL2435 ALA2436 ILE2437 ASN2438 SER2439 THR2440 CYS2441 ARG2442 THR2443 ASP2444 SER2445 GLY2446 PHE2447 ALA2448 ALA2449 VAL2450 SER2451 ASP2452 VAL2453 ASN2454 LYS2455 ALA2456 ASN2457 GLY2458 GLY2459 SER2460 LYS2461 TYR2462 ASP2463 ASN2464 GLN2465 GLU2466 SER2467 PHE2468 LEU2469 PHE2470 ALA2471 GLU2472 VAL2473 MET2474 LYS2475 TYR2476 SER2477 TYR2478 LEU2479 ALA2480 HIS2481 SER2482 GLU2483 ASP2484 ALA2485 ALA2486 TRP2487 GLN2488 VAL2489 GLN2490 LYS2491 GLY2492 GLY2493 LYS2494 ASN2495 THR2496 PHE2497 VAL2498 TYR2499 ASN2500 THR2501 GLU2502 ALA2503 HIS2504 PRO2505 ILE2506 SER2507 VAL2508 ALA2509 ARG2510
Ligands
Unit 3 NAG1 NAG2
Unit 4 NAG1 NDG2 MAN3 MAN4 MAN5
Unit 5 NAG1 NAG2
Unit 6 MMA1 LDY2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NDG2 MAN3 MAN4 MAN5
Unit 9 NAG1 NDG2
Unit 10 MMA1 LDY2
Unit 11 CA1550 GOL1902 GOL1903
Unit 12 CA2551 GOL2902 GOL2903
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany