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Sequence, Chains, Asymmetric and Biological Units

Title HIGH RESOLUTION CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI CY NITRITE REDUCTASE.
Keywords DECAHEME, REDUCTASE, ELECTRON TRANSPORT, IRON, METAL-BINDING OXIDOREDUCTASE, TRANSPORT
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2RDZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CYTOCHROME C-552  A 441 3476 0
2  Protein   CYTOCHROME C-552  B 441 3476 0
3  Protein   CYTOCHROME C-552  C 441 3476 0
4  Protein   CYTOCHROME C-552  D 441 3476 0
5  Ligand   CYTOCHROME C-552  A 16 0 254
6  Ligand   CYTOCHROME C-552  B 14 0 246
7  Ligand   CYTOCHROME C-552  C 14 0 246
8  Ligand   CYTOCHROME C-552  D 16 0 254
9 Water     2149 0 2149
total       3973 13904 3149
Proteins
Unit 1 THR37 VAL38 GLU39 ALA40 LYS41 ASN42 GLU43 THR44 PHE45 ALA46 PRO47 GLN48 HIS49 PRO50 ASP51 GLN52 TYR53 LEU54 SER55 TRP56 LYS57 ALA58 THR59 SER60 GLU61 GLN62 SER63 GLU64 ARG65 VAL66 ASP67 ALA68 LEU69 ALA70 GLU71 ASP72 PRO73 ARG74 LEU75 VAL76 ILE77 LEU78 TRP79 ALA80 GLY81 TYR82 PRO83 PHE84 SER85 ARG86 ASP87 TYR88 ASN89 LYS90 PRO91 ARG92 GLY93 HIS94 ALA95 PHE96 ALA97 VAL98 THR99 ASP100 VAL101 ARG102 GLU103 THR104 LEU105 ARG106 THR107 GLY108 ALA109 PRO110 LYS111 ASN112 ALA113 GLU114 ASP115 GLY116 PRO117 LEU118 PRO119 MET120 ALA121 CYS122 TRP123 SER124 CYS125 LYS126 SER127 PRO128 ASP129 VAL130 ALA131 ARG132 LEU133 ILE134 GLN135 LYS136 ASP137 GLY138 GLU139 ASP140 GLY141 TYR142 PHE143 HIS144 GLY145 LYS146 TRP147 ALA148 ARG149 GLY150 GLY151 PRO152 GLU153 ILE154 VAL155 ASN156 ASN157 LEU158 GLY159 CYS160 ALA161 ASP162 CYS163 HIS164 ASN165 THR166 ALA167 SER168 PRO169 GLU170 PHE171 ALA172 LYS173 GLY174 LYS175 PRO176 GLU177 LEU178 THR179 LEU180 SER181 ARG182 PRO183 TYR184 ALA185 ALA186 ARG187 ALA188 MET189 GLU190 ALA191 ILE192 GLY193 LYS194 PRO195 PHE196 GLU197 LYS198 ALA199 GLY200 ARG201 PHE202 ASP203 GLN204 GLN205 SER206 MET207 VAL208 CYS209 GLY210 GLN211 CYS212 HIS213 VAL214 GLU215 TYR216 TYR217 PHE218 ASP219 GLY220 LYS221 ASN222 LYS223 ALA224 VAL225 LYS226 PHE227 PRO228 TRP229 ASP230 ASP231 GLY232 MET233 LYS234 VAL235 GLU236 ASN237 MET238 GLU239 GLN240 TYR241 TYR242 ASP243 LYS244 ILE245 ALA246 PHE247 SER248 ASP249 TRP250 THR251 ASN252 SER253 LEU254 SER255 LYS256 THR257 PRO258 MET259 LEU260 LYS261 ALA262 GLN263 HIS264 PRO265 GLU266 TYR267 GLU268 THR269 TRP270 THR271 ALA272 GLY273 ILE274 HIS275 GLY276 LYS277 ASN278 ASN279 VAL280 THR281 CYS282 ILE283 ASP284 CYS285 HIS286 MET287 PRO288 LYS289 VAL290 GLN291 ASN292 ALA293 GLU294 GLY295 LYS296 LEU297 TYR298 THR299 ASP300 HIS301 LYS302 ILE303 GLY304 ASN305 PRO306 PHE307 ASP308 ASN309 PHE310 ALA311 GLN312 THR313 CYS314 ALA315 ASN316 CYS317 HIS318 THR319 GLN320 ASP321 LYS322 ALA323 ALA324 LEU325 GLN326 LYS327 VAL328 VAL329 ALA330 GLU331 ARG332 LYS333 GLN334 SER335 ILE336 ASN337 ASP338 LEU339 LYS340 ILE341 LYS342 VAL343 GLU344 ASP345 GLN346 LEU347 VAL348 HIS349 ALA350 HIS351 PHE352 GLU353 ALA354 LYS355 ALA356 ALA357 LEU358 ASP359 ALA360 GLY361 ALA362 THR363 GLU364 ALA365 GLU366 MET367 LYS368 PRO369 ILE370 GLN371 ASP372 ASP373 ILE374 ARG375 HIS376 ALA377 GLN378 TRP379 ARG380 TRP381 ASP382 LEU383 ALA384 ILE385 ALA386 SER387 HIS388 GLY389 ILE390 HIS391 MET392 HIS393 ALA394 PRO395 GLU396 GLU397 GLY398 LEU399 ARG400 MET401 LEU402 GLY403 THR404 ALA405 MET406 ASP407 LYS408 ALA409 ALA410 ASP411 ALA412 ARG413 THR414 LYS415 LEU416 ALA417 ARG418 LEU419 LEU420 ALA421 THR422 LYS423 GLY424 ILE425 THR426 HIS427 GLU428 ILE429 GLN430 ILE431 PRO432 ASP433 ILE434 SER435 THR436 LYS437 GLU438 LYS439 ALA440 GLN441 GLN442 ALA443 ILE444 GLY445 LEU446 ASN447 MET448 GLU449 GLN450 ILE451 LYS452 ALA453 GLU454 LYS455 GLN456 ASP457 PHE458 ILE459 LYS460 THR461 VAL462 ILE463 PRO464 GLN465 TRP466 GLU467 GLU468 GLN469 ALA470 ARG471 LYS472 ASN473 GLY474 LEU475 LEU476 SER477
Unit 2 THR37 VAL38 GLU39 ALA40 LYS41 ASN42 GLU43 THR44 PHE45 ALA46 PRO47 GLN48 HIS49 PRO50 ASP51 GLN52 TYR53 LEU54 SER55 TRP56 LYS57 ALA58 THR59 SER60 GLU61 GLN62 SER63 GLU64 ARG65 VAL66 ASP67 ALA68 LEU69 ALA70 GLU71 ASP72 PRO73 ARG74 LEU75 VAL76 ILE77 LEU78 TRP79 ALA80 GLY81 TYR82 PRO83 PHE84 SER85 ARG86 ASP87 TYR88 ASN89 LYS90 PRO91 ARG92 GLY93 HIS94 ALA95 PHE96 ALA97 VAL98 THR99 ASP100 VAL101 ARG102 GLU103 THR104 LEU105 ARG106 THR107 GLY108 ALA109 PRO110 LYS111 ASN112 ALA113 GLU114 ASP115 GLY116 PRO117 LEU118 PRO119 MET120 ALA121 CYS122 TRP123 SER124 CYS125 LYS126 SER127 PRO128 ASP129 VAL130 ALA131 ARG132 LEU133 ILE134 GLN135 LYS136 ASP137 GLY138 GLU139 ASP140 GLY141 TYR142 PHE143 HIS144 GLY145 LYS146 TRP147 ALA148 ARG149 GLY150 GLY151 PRO152 GLU153 ILE154 VAL155 ASN156 ASN157 LEU158 GLY159 CYS160 ALA161 ASP162 CYS163 HIS164 ASN165 THR166 ALA167 SER168 PRO169 GLU170 PHE171 ALA172 LYS173 GLY174 LYS175 PRO176 GLU177 LEU178 THR179 LEU180 SER181 ARG182 PRO183 TYR184 ALA185 ALA186 ARG187 ALA188 MET189 GLU190 ALA191 ILE192 GLY193 LYS194 PRO195 PHE196 GLU197 LYS198 ALA199 GLY200 ARG201 PHE202 ASP203 GLN204 GLN205 SER206 MET207 VAL208 CYS209 GLY210 GLN211 CYS212 HIS213 VAL214 GLU215 TYR216 TYR217 PHE218 ASP219 GLY220 LYS221 ASN222 LYS223 ALA224 VAL225 LYS226 PHE227 PRO228 TRP229 ASP230 ASP231 GLY232 MET233 LYS234 VAL235 GLU236 ASN237 MET238 GLU239 GLN240 TYR241 TYR242 ASP243 LYS244 ILE245 ALA246 PHE247 SER248 ASP249 TRP250 THR251 ASN252 SER253 LEU254 SER255 LYS256 THR257 PRO258 MET259 LEU260 LYS261 ALA262 GLN263 HIS264 PRO265 GLU266 TYR267 GLU268 THR269 TRP270 THR271 ALA272 GLY273 ILE274 HIS275 GLY276 LYS277 ASN278 ASN279 VAL280 THR281 CYS282 ILE283 ASP284 CYS285 HIS286 MET287 PRO288 LYS289 VAL290 GLN291 ASN292 ALA293 GLU294 GLY295 LYS296 LEU297 TYR298 THR299 ASP300 HIS301 LYS302 ILE303 GLY304 ASN305 PRO306 PHE307 ASP308 ASN309 PHE310 ALA311 GLN312 THR313 CYS314 ALA315 ASN316 CYS317 HIS318 THR319 GLN320 ASP321 LYS322 ALA323 ALA324 LEU325 GLN326 LYS327 VAL328 VAL329 ALA330 GLU331 ARG332 LYS333 GLN334 SER335 ILE336 ASN337 ASP338 LEU339 LYS340 ILE341 LYS342 VAL343 GLU344 ASP345 GLN346 LEU347 VAL348 HIS349 ALA350 HIS351 PHE352 GLU353 ALA354 LYS355 ALA356 ALA357 LEU358 ASP359 ALA360 GLY361 ALA362 THR363 GLU364 ALA365 GLU366 MET367 LYS368 PRO369 ILE370 GLN371 ASP372 ASP373 ILE374 ARG375 HIS376 ALA377 GLN378 TRP379 ARG380 TRP381 ASP382 LEU383 ALA384 ILE385 ALA386 SER387 HIS388 GLY389 ILE390 HIS391 MET392 HIS393 ALA394 PRO395 GLU396 GLU397 GLY398 LEU399 ARG400 MET401 LEU402 GLY403 THR404 ALA405 MET406 ASP407 LYS408 ALA409 ALA410 ASP411 ALA412 ARG413 THR414 LYS415 LEU416 ALA417 ARG418 LEU419 LEU420 ALA421 THR422 LYS423 GLY424 ILE425 THR426 HIS427 GLU428 ILE429 GLN430 ILE431 PRO432 ASP433 ILE434 SER435 THR436 LYS437 GLU438 LYS439 ALA440 GLN441 GLN442 ALA443 ILE444 GLY445 LEU446 ASN447 MET448 GLU449 GLN450 ILE451 LYS452 ALA453 GLU454 LYS455 GLN456 ASP457 PHE458 ILE459 LYS460 THR461 VAL462 ILE463 PRO464 GLN465 TRP466 GLU467 GLU468 GLN469 ALA470 ARG471 LYS472 ASN473 GLY474 LEU475 LEU476 SER477
Unit 3 THR37 VAL38 GLU39 ALA40 LYS41 ASN42 GLU43 THR44 PHE45 ALA46 PRO47 GLN48 HIS49 PRO50 ASP51 GLN52 TYR53 LEU54 SER55 TRP56 LYS57 ALA58 THR59 SER60 GLU61 GLN62 SER63 GLU64 ARG65 VAL66 ASP67 ALA68 LEU69 ALA70 GLU71 ASP72 PRO73 ARG74 LEU75 VAL76 ILE77 LEU78 TRP79 ALA80 GLY81 TYR82 PRO83 PHE84 SER85 ARG86 ASP87 TYR88 ASN89 LYS90 PRO91 ARG92 GLY93 HIS94 ALA95 PHE96 ALA97 VAL98 THR99 ASP100 VAL101 ARG102 GLU103 THR104 LEU105 ARG106 THR107 GLY108 ALA109 PRO110 LYS111 ASN112 ALA113 GLU114 ASP115 GLY116 PRO117 LEU118 PRO119 MET120 ALA121 CYS122 TRP123 SER124 CYS125 LYS126 SER127 PRO128 ASP129 VAL130 ALA131 ARG132 LEU133 ILE134 GLN135 LYS136 ASP137 GLY138 GLU139 ASP140 GLY141 TYR142 PHE143 HIS144 GLY145 LYS146 TRP147 ALA148 ARG149 GLY150 GLY151 PRO152 GLU153 ILE154 VAL155 ASN156 ASN157 LEU158 GLY159 CYS160 ALA161 ASP162 CYS163 HIS164 ASN165 THR166 ALA167 SER168 PRO169 GLU170 PHE171 ALA172 LYS173 GLY174 LYS175 PRO176 GLU177 LEU178 THR179 LEU180 SER181 ARG182 PRO183 TYR184 ALA185 ALA186 ARG187 ALA188 MET189 GLU190 ALA191 ILE192 GLY193 LYS194 PRO195 PHE196 GLU197 LYS198 ALA199 GLY200 ARG201 PHE202 ASP203 GLN204 GLN205 SER206 MET207 VAL208 CYS209 GLY210 GLN211 CYS212 HIS213 VAL214 GLU215 TYR216 TYR217 PHE218 ASP219 GLY220 LYS221 ASN222 LYS223 ALA224 VAL225 LYS226 PHE227 PRO228 TRP229 ASP230 ASP231 GLY232 MET233 LYS234 VAL235 GLU236 ASN237 MET238 GLU239 GLN240 TYR241 TYR242 ASP243 LYS244 ILE245 ALA246 PHE247 SER248 ASP249 TRP250 THR251 ASN252 SER253 LEU254 SER255 LYS256 THR257 PRO258 MET259 LEU260 LYS261 ALA262 GLN263 HIS264 PRO265 GLU266 TYR267 GLU268 THR269 TRP270 THR271 ALA272 GLY273 ILE274 HIS275 GLY276 LYS277 ASN278 ASN279 VAL280 THR281 CYS282 ILE283 ASP284 CYS285 HIS286 MET287 PRO288 LYS289 VAL290 GLN291 ASN292 ALA293 GLU294 GLY295 LYS296 LEU297 TYR298 THR299 ASP300 HIS301 LYS302 ILE303 GLY304 ASN305 PRO306 PHE307 ASP308 ASN309 PHE310 ALA311 GLN312 THR313 CYS314 ALA315 ASN316 CYS317 HIS318 THR319 GLN320 ASP321 LYS322 ALA323 ALA324 LEU325 GLN326 LYS327 VAL328 VAL329 ALA330 GLU331 ARG332 LYS333 GLN334 SER335 ILE336 ASN337 ASP338 LEU339 LYS340 ILE341 LYS342 VAL343 GLU344 ASP345 GLN346 LEU347 VAL348 HIS349 ALA350 HIS351 PHE352 GLU353 ALA354 LYS355 ALA356 ALA357 LEU358 ASP359 ALA360 GLY361 ALA362 THR363 GLU364 ALA365 GLU366 MET367 LYS368 PRO369 ILE370 GLN371 ASP372 ASP373 ILE374 ARG375 HIS376 ALA377 GLN378 TRP379 ARG380 TRP381 ASP382 LEU383 ALA384 ILE385 ALA386 SER387 HIS388 GLY389 ILE390 HIS391 MET392 HIS393 ALA394 PRO395 GLU396 GLU397 GLY398 LEU399 ARG400 MET401 LEU402 GLY403 THR404 ALA405 MET406 ASP407 LYS408 ALA409 ALA410 ASP411 ALA412 ARG413 THR414 LYS415 LEU416 ALA417 ARG418 LEU419 LEU420 ALA421 THR422 LYS423 GLY424 ILE425 THR426 HIS427 GLU428 ILE429 GLN430 ILE431 PRO432 ASP433 ILE434 SER435 THR436 LYS437 GLU438 LYS439 ALA440 GLN441 GLN442 ALA443 ILE444 GLY445 LEU446 ASN447 MET448 GLU449 GLN450 ILE451 LYS452 ALA453 GLU454 LYS455 GLN456 ASP457 PHE458 ILE459 LYS460 THR461 VAL462 ILE463 PRO464 GLN465 TRP466 GLU467 GLU468 GLN469 ALA470 ARG471 LYS472 ASN473 GLY474 LEU475 LEU476 SER477
Unit 4 THR37 VAL38 GLU39 ALA40 LYS41 ASN42 GLU43 THR44 PHE45 ALA46 PRO47 GLN48 HIS49 PRO50 ASP51 GLN52 TYR53 LEU54 SER55 TRP56 LYS57 ALA58 THR59 SER60 GLU61 GLN62 SER63 GLU64 ARG65 VAL66 ASP67 ALA68 LEU69 ALA70 GLU71 ASP72 PRO73 ARG74 LEU75 VAL76 ILE77 LEU78 TRP79 ALA80 GLY81 TYR82 PRO83 PHE84 SER85 ARG86 ASP87 TYR88 ASN89 LYS90 PRO91 ARG92 GLY93 HIS94 ALA95 PHE96 ALA97 VAL98 THR99 ASP100 VAL101 ARG102 GLU103 THR104 LEU105 ARG106 THR107 GLY108 ALA109 PRO110 LYS111 ASN112 ALA113 GLU114 ASP115 GLY116 PRO117 LEU118 PRO119 MET120 ALA121 CYS122 TRP123 SER124 CYS125 LYS126 SER127 PRO128 ASP129 VAL130 ALA131 ARG132 LEU133 ILE134 GLN135 LYS136 ASP137 GLY138 GLU139 ASP140 GLY141 TYR142 PHE143 HIS144 GLY145 LYS146 TRP147 ALA148 ARG149 GLY150 GLY151 PRO152 GLU153 ILE154 VAL155 ASN156 ASN157 LEU158 GLY159 CYS160 ALA161 ASP162 CYS163 HIS164 ASN165 THR166 ALA167 SER168 PRO169 GLU170 PHE171 ALA172 LYS173 GLY174 LYS175 PRO176 GLU177 LEU178 THR179 LEU180 SER181 ARG182 PRO183 TYR184 ALA185 ALA186 ARG187 ALA188 MET189 GLU190 ALA191 ILE192 GLY193 LYS194 PRO195 PHE196 GLU197 LYS198 ALA199 GLY200 ARG201 PHE202 ASP203 GLN204 GLN205 SER206 MET207 VAL208 CYS209 GLY210 GLN211 CYS212 HIS213 VAL214 GLU215 TYR216 TYR217 PHE218 ASP219 GLY220 LYS221 ASN222 LYS223 ALA224 VAL225 LYS226 PHE227 PRO228 TRP229 ASP230 ASP231 GLY232 MET233 LYS234 VAL235 GLU236 ASN237 MET238 GLU239 GLN240 TYR241 TYR242 ASP243 LYS244 ILE245 ALA246 PHE247 SER248 ASP249 TRP250 THR251 ASN252 SER253 LEU254 SER255 LYS256 THR257 PRO258 MET259 LEU260 LYS261 ALA262 GLN263 HIS264 PRO265 GLU266 TYR267 GLU268 THR269 TRP270 THR271 ALA272 GLY273 ILE274 HIS275 GLY276 LYS277 ASN278 ASN279 VAL280 THR281 CYS282 ILE283 ASP284 CYS285 HIS286 MET287 PRO288 LYS289 VAL290 GLN291 ASN292 ALA293 GLU294 GLY295 LYS296 LEU297 TYR298 THR299 ASP300 HIS301 LYS302 ILE303 GLY304 ASN305 PRO306 PHE307 ASP308 ASN309 PHE310 ALA311 GLN312 THR313 CYS314 ALA315 ASN316 CYS317 HIS318 THR319 GLN320 ASP321 LYS322 ALA323 ALA324 LEU325 GLN326 LYS327 VAL328 VAL329 ALA330 GLU331 ARG332 LYS333 GLN334 SER335 ILE336 ASN337 ASP338 LEU339 LYS340 ILE341 LYS342 VAL343 GLU344 ASP345 GLN346 LEU347 VAL348 HIS349 ALA350 HIS351 PHE352 GLU353 ALA354 LYS355 ALA356 ALA357 LEU358 ASP359 ALA360 GLY361 ALA362 THR363 GLU364 ALA365 GLU366 MET367 LYS368 PRO369 ILE370 GLN371 ASP372 ASP373 ILE374 ARG375 HIS376 ALA377 GLN378 TRP379 ARG380 TRP381 ASP382 LEU383 ALA384 ILE385 ALA386 SER387 HIS388 GLY389 ILE390 HIS391 MET392 HIS393 ALA394 PRO395 GLU396 GLU397 GLY398 LEU399 ARG400 MET401 LEU402 GLY403 THR404 ALA405 MET406 ASP407 LYS408 ALA409 ALA410 ASP411 ALA412 ARG413 THR414 LYS415 LEU416 ALA417 ARG418 LEU419 LEU420 ALA421 THR422 LYS423 GLY424 ILE425 THR426 HIS427 GLU428 ILE429 GLN430 ILE431 PRO432 ASP433 ILE434 SER435 THR436 LYS437 GLU438 LYS439 ALA440 GLN441 GLN442 ALA443 ILE444 GLY445 LEU446 ASN447 MET448 GLU449 GLN450 ILE451 LYS452 ALA453 GLU454 LYS455 GLN456 ASP457 PHE458 ILE459 LYS460 THR461 VAL462 ILE463 PRO464 GLN465 TRP466 GLU467 GLU468 GLN469 ALA470 ARG471 LYS472 ASN473 GLY474 LEU475 LEU476 SER477
Ligands
Unit 5 HEC1 HEC2 HEC3 HEC4 HEC5 EDO11 EDO13 EDO14 EDO15 EDO20 EDO21 EDO22 EDO481 CA1501 CA1502 SO42001
Unit 6 HEC1 HEC2 HEC3 HEC4 HEC5 EDO16 EDO17 EDO18 EDO19 EDO20 EDO481 CA1501 CA1502 SO42001
Unit 7 HEC1 HEC2 HEC3 HEC4 HEC5 EDO12 EDO21 EDO22 EDO23 EDO25 EDO481 CA1501 CA1502 SO42001
Unit 8 HEC1 HEC2 HEC3 HEC4 HEC5 EDO6 EDO21 EDO22 EDO23 EDO24 EDO25 EDO481 EDO482 CA1501 CA1502 SO42001
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany