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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WI D(GPG)-CISPLATIN CONTAINING DNA
Keywords PROTEIN-CISPLATIN-DNA-DNTP COMPLEX, REPLICATION, TRANSFERASE COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2R8K     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE ETA  A 511 4059 0
2  Other macromolecule   5'-D(*DGP*DTP*DGP*DGP*DTP*DGP*DAP*DGP*DC)-3'  Q 9 186 0
3  Other macromolecule    U 10 201 0
4  Ligand    U 1 0 3
5  Protein   DNA POLYMERASE ETA  B 511 4059 0
6  Other macromolecule   5'-D(*DGP*DTP*DGP*DGP*DTP*DGP*DAP*DGP*DC)-3'  P 9 186 0
7  Other macromolecule    T 10 201 0
8  Ligand    T 1 0 3
9  Ligand   DNA POLYMERASE ETA  A 2 0 2
10  Ligand   DNA POLYMERASE ETA  B 2 0 2
11  Ligand   DNA POLYMERASE ETA  A 1 0 30
12  Ligand   DNA POLYMERASE ETA  B 1 0 30
total       1068 8892 70

Proteins
Unit 1 GLY-1 ARG0 MET1 SER2 LYS3 PHE4 THR5 TRP6 LYS7 GLU8 LEU9 ILE10 GLN11 LEU12 GLY13 SER14 PRO15 SER16 LYS17 ALA18 TYR19 GLU20 SER21 SER22 LEU23 ALA24 CYS25 ILE26 ALA27 HIS28 ILE29 ASP30 MET31 ASN32 ALA33 PHE34 PHE35 ALA36 GLN37 VAL38 GLU39 GLN40 MET41 ARG42 CYS43 GLY44 LEU45 SER46 LYS47 GLU48 ASP49 PRO50 VAL51 VAL52 CYS53 VAL54 GLN55 TRP56 ASN57 SER58 ILE59 ILE60 ALA61 VAL62 SER63 TYR64 ALA65 ALA66 ARG67 LYS68 TYR69 GLY70 ILE71 SER72 ARG73 MET74 ASP75 THR76 ILE77 GLN78 GLU79 ALA80 LEU81 LYS82 LYS83 CYS84 SER85 ASN86 LEU87 ILE88 PRO89 ILE90 HIS91 THR92 ALA93 VAL94 PHE95 LYS96 LYS97 GLY98 GLU99 ASP100 PHE101 TRP102 GLN103 TYR104 HIS105 ASP106 GLY107 CYS108 GLY109 SER110 TRP111 VAL112 GLN113 ASP114 PRO115 ALA116 LYS117 GLN118 ILE119 SER120 VAL121 GLU122 ASP123 HIS124 LYS125 VAL126 SER127 LEU128 GLU129 PRO130 TYR131 ARG132 ARG133 GLU134 SER135 ARG136 LYS137 ALA138 LEU139 LYS140 ILE141 PHE142 LYS143 SER144 ALA145 CYS146 ASP147 LEU148 VAL149 GLU150 ARG151 ALA152 SER153 ILE154 ASP155 GLU156 VAL157 PHE158 LEU159 ASP160 LEU161 GLY162 ARG163 ILE164 CYS165 PHE166 ASN167 MET168 LEU169 MET170 PHE171 ASP172 ASN173 GLU174 TYR175 GLU176 LEU177 THR178 GLY179 ASP180 LEU181 LYS182 LEU183 LYS184 ASP185 ALA186 LEU187 SER188 ASN189 ILE190 ARG191 GLU192 ALA193 PHE194 ILE195 GLY196 GLY197 ASN198 TYR199 ASP200 ILE201 ASN202 SER203 HIS204 LEU205 PRO206 LEU207 ILE208 PRO209 GLU210 LYS211 ILE212 LYS213 SER214 LEU215 LYS216 PHE217 GLU218 GLY219 ASP220 VAL221 PHE222 ASN223 PRO224 GLU225 GLY226 ARG227 ASP228 LEU229 ILE230 THR231 ASP232 TRP233 ASP234 ASP235 VAL236 ILE237 LEU238 ALA239 LEU240 GLY241 SER242 GLN243 VAL244 CYS245 LYS246 GLY247 ILE248 ARG249 ASP250 SER251 ILE252 LYS253 ASP254 ILE255 LEU256 GLY257 TYR258 THR259 THR260 SER261 CYS262 GLY263 LEU264 SER265 SER266 THR267 LYS268 ASN269 VAL270 CYS271 LYS272 LEU273 ALA274 SER275 ASN276 TYR277 LYS278 LYS279 PRO280 ASP281 ALA282 GLN283 THR284 ILE285 VAL286 LYS287 ASN288 ASP289 CYS290 LEU291 LEU292 ASP293 PHE294 LEU295 ASP296 CYS297 GLY298 LYS299 PHE300 GLU301 ILE302 THR303 SER304 PHE305 TRP306 THR307 LEU308 GLY309 GLY310 VAL311 LEU312 GLY313 LYS314 GLU315 LEU316 ILE317 ASP318 VAL319 LEU320 ASP321 LEU322 PRO323 HIS324 GLU325 ASN326 SER327 ILE328 LYS329 HIS330 ILE331 ARG332 GLU333 THR334 TRP335 PRO336 ASP337 ASN338 ALA339 GLY340 GLN341 LEU342 LYS343 GLU344 PHE345 LEU346 ASP347 ALA348 LYS349 VAL350 LYS351 GLN352 SER353 ASP354 TYR355 ASP356 ARG357 SER358 THR359 SER360 ASN361 ILE362 ASP363 PRO364 LEU365 LYS366 THR367 ALA368 ASP369 LEU370 ALA371 GLU372 LYS373 LEU374 PHE375 LYS376 LEU377 SER378 ARG379 GLY380 ARG381 TYR382 GLY383 LEU384 PRO385 LEU386 SER387 SER388 ARG389 PRO390 VAL391 VAL392 LYS393 SER394 MET395 MET396 SER397 ASN398 LYS399 ASN400 LEU401 ARG402 GLY403 LYS404 SER405 CYS406 ASN407 SER408 ILE409 VAL410 ASP411 CYS412 ILE413 SER414 TRP415 LEU416 GLU417 VAL418 PHE419 CYS420 ALA421 GLU422 LEU423 THR424 SER425 ARG426 ILE427 GLN428 ASP429 LEU430 GLU431 GLN432 GLU433 TYR434 ASN435 LYS436 ILE437 VAL438 ILE439 PRO440 ARG441 THR442 VAL443 SER444 ILE445 SER446 LEU447 LYS448 THR449 LYS450 SER451 TYR452 GLU453 VAL454 TYR455 ARG456 LYS457 SER458 GLY459 PRO460 VAL461 ALA462 TYR463 LYS464 GLY465 ILE466 ASN467 PHE468 GLN469 SER470 HIS471 GLU472 LEU473 LEU474 LYS475 VAL476 GLY477 ILE478 LYS479 PHE480 VAL481 THR482 ASP483 LEU484 ASP485 ILE486 LYS487 GLY488 LYS489 ASN490 LYS491 SER492 TYR493 TYR494 PRO495 LEU496 THR497 LYS498 LEU499 SER500 MET501 THR502 ILE503 THR504 ASN505 PHE506 ASP507 ILE508 ILE509
Unit 5 GLY-1 ARG0 MET1 SER2 LYS3 PHE4 THR5 TRP6 LYS7 GLU8 LEU9 ILE10 GLN11 LEU12 GLY13 SER14 PRO15 SER16 LYS17 ALA18 TYR19 GLU20 SER21 SER22 LEU23 ALA24 CYS25 ILE26 ALA27 HIS28 ILE29 ASP30 MET31 ASN32 ALA33 PHE34 PHE35 ALA36 GLN37 VAL38 GLU39 GLN40 MET41 ARG42 CYS43 GLY44 LEU45 SER46 LYS47 GLU48 ASP49 PRO50 VAL51 VAL52 CYS53 VAL54 GLN55 TRP56 ASN57 SER58 ILE59 ILE60 ALA61 VAL62 SER63 TYR64 ALA65 ALA66 ARG67 LYS68 TYR69 GLY70 ILE71 SER72 ARG73 MET74 ASP75 THR76 ILE77 GLN78 GLU79 ALA80 LEU81 LYS82 LYS83 CYS84 SER85 ASN86 LEU87 ILE88 PRO89 ILE90 HIS91 THR92 ALA93 VAL94 PHE95 LYS96 LYS97 GLY98 GLU99 ASP100 PHE101 TRP102 GLN103 TYR104 HIS105 ASP106 GLY107 CYS108 GLY109 SER110 TRP111 VAL112 GLN113 ASP114 PRO115 ALA116 LYS117 GLN118 ILE119 SER120 VAL121 GLU122 ASP123 HIS124 LYS125 VAL126 SER127 LEU128 GLU129 PRO130 TYR131 ARG132 ARG133 GLU134 SER135 ARG136 LYS137 ALA138 LEU139 LYS140 ILE141 PHE142 LYS143 SER144 ALA145 CYS146 ASP147 LEU148 VAL149 GLU150 ARG151 ALA152 SER153 ILE154 ASP155 GLU156 VAL157 PHE158 LEU159 ASP160 LEU161 GLY162 ARG163 ILE164 CYS165 PHE166 ASN167 MET168 LEU169 MET170 PHE171 ASP172 ASN173 GLU174 TYR175 GLU176 LEU177 THR178 GLY179 ASP180 LEU181 LYS182 LEU183 LYS184 ASP185 ALA186 LEU187 SER188 ASN189 ILE190 ARG191 GLU192 ALA193 PHE194 ILE195 GLY196 GLY197 ASN198 TYR199 ASP200 ILE201 ASN202 SER203 HIS204 LEU205 PRO206 LEU207 ILE208 PRO209 GLU210 LYS211 ILE212 LYS213 SER214 LEU215 LYS216 PHE217 GLU218 GLY219 ASP220 VAL221 PHE222 ASN223 PRO224 GLU225 GLY226 ARG227 ASP228 LEU229 ILE230 THR231 ASP232 TRP233 ASP234 ASP235 VAL236 ILE237 LEU238 ALA239 LEU240 GLY241 SER242 GLN243 VAL244 CYS245 LYS246 GLY247 ILE248 ARG249 ASP250 SER251 ILE252 LYS253 ASP254 ILE255 LEU256 GLY257 TYR258 THR259 THR260 SER261 CYS262 GLY263 LEU264 SER265 SER266 THR267 LYS268 ASN269 VAL270 CYS271 LYS272 LEU273 ALA274 SER275 ASN276 TYR277 LYS278 LYS279 PRO280 ASP281 ALA282 GLN283 THR284 ILE285 VAL286 LYS287 ASN288 ASP289 CYS290 LEU291 LEU292 ASP293 PHE294 LEU295 ASP296 CYS297 GLY298 LYS299 PHE300 GLU301 ILE302 THR303 SER304 PHE305 TRP306 THR307 LEU308 GLY309 GLY310 VAL311 LEU312 GLY313 LYS314 GLU315 LEU316 ILE317 ASP318 VAL319 LEU320 ASP321 LEU322 PRO323 HIS324 GLU325 ASN326 SER327 ILE328 LYS329 HIS330 ILE331 ARG332 GLU333 THR334 TRP335 PRO336 ASP337 ASN338 ALA339 GLY340 GLN341 LEU342 LYS343 GLU344 PHE345 LEU346 ASP347 ALA348 LYS349 VAL350 LYS351 GLN352 SER353 ASP354 TYR355 ASP356 ARG357 SER358 THR359 SER360 ASN361 ILE362 ASP363 PRO364 LEU365 LYS366 THR367 ALA368 ASP369 LEU370 ALA371 GLU372 LYS373 LEU374 PHE375 LYS376 LEU377 SER378 ARG379 GLY380 ARG381 TYR382 GLY383 LEU384 PRO385 LEU386 SER387 SER388 ARG389 PRO390 VAL391 VAL392 LYS393 SER394 MET395 MET396 SER397 ASN398 LYS399 ASN400 LEU401 ARG402 GLY403 LYS404 SER405 CYS406 ASN407 SER408 ILE409 VAL410 ASP411 CYS412 ILE413 SER414 TRP415 LEU416 GLU417 VAL418 PHE419 CYS420 ALA421 GLU422 LEU423 THR424 SER425 ARG426 ILE427 GLN428 ASP429 LEU430 GLU431 GLN432 GLU433 TYR434 ASN435 LYS436 ILE437 VAL438 ILE439 PRO440 ARG441 THR442 VAL443 SER444 ILE445 SER446 LEU447 LYS448 THR449 LYS450 SER451 TYR452 GLU453 VAL454 TYR455 ARG456 LYS457 SER458 GLY459 PRO460 VAL461 ALA462 TYR463 LYS464 GLY465 ILE466 ASN467 PHE468 GLN469 SER470 HIS471 GLU472 LEU473 LEU474 LYS475 VAL476 GLY477 ILE478 LYS479 PHE480 VAL481 THR482 ASP483 LEU484 ASP485 ILE486 LYS487 GLY488 LYS489 ASN490 LYS491 SER492 TYR493 TYR494 PRO495 LEU496 THR497 LYS498 LEU499 SER500 MET501 THR502 ILE503 THR504 ASN505 PHE506 ASP507 ILE508 ILE509

Other macromolecules
Unit 2 DG5 DT6 DG7 DG8 DT9 DG10 DA11 DG12 DC13
Unit 3 DG4 DG5 DC6 DT7 DC8 DA9 DC10 DC11 DA12 DC13
Unit 6 DG5 DT6 DG7 DG8 DT9 DG10 DA11 DG12 DC13
Unit 7 DG4 DG5 DC6 DT7 DC8 DA9 DC10 DC11 DA12 DC13

Ligands
Unit 4 CPT45
Unit 8 CPT45
Unit 9 CA1001 CA1002
Unit 10 CA3001 CA3002
Unit 11 DTP2001
Unit 12 DTP4001

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany