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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (UGUGACC)/MRNA 5 (M7GPPPG) COMPLEX
Keywords VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURA RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2R7W     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    X 7 145 0
2  Protein   RNA-DEPENDENT RNA POLYMERASE  A 1073 8699 0
3  Ligand   RNA-DEPENDENT RNA POLYMERASE  A 1 0 32
total       1081 8844 32
Proteins
Unit 2 GLY2 LYS3 TYR4 ASN5 LEU6 ILE7 LEU8 SER9 GLU10 TYR11 LEU12 SER13 PHE14 ILE15 TYR16 ASN17 SER18 VAL22 GLN23 ILE24 PRO25 ILE26 TYR27 TYR28 SER29 SER30 ASN31 SER32 GLU33 LEU34 GLU35 ASN36 ARG37 CYS38 ILE39 GLU40 PHE41 HIS42 SER43 LYS44 CYS45 LEU46 GLU47 ASN48 SER49 LYS50 ASN51 GLY52 LEU53 SER54 LEU55 ARG56 LYS57 LEU58 PHE59 VAL60 GLU61 TYR62 ASN63 ASP64 VAL65 ILE66 GLU67 ASN68 ALA69 THR70 LEU71 LEU72 SER73 ILE74 LEU75 SER76 TYR77 SER78 TYR79 ASP80 LYS81 TYR82 ASN83 ALA84 VAL85 GLU86 ARG87 LYS88 LEU89 VAL90 LYS91 TYR92 ALA93 LYS94 GLY95 LYS96 PRO97 LEU98 GLU99 ALA100 ASP101 LEU102 THR103 VAL104 ASN105 GLU106 LEU107 ASP108 TYR109 GLU110 ASN111 ASN112 LYS113 MET114 THR115 SER116 GLU117 LEU118 PHE119 PRO120 THR121 ALA122 GLU123 GLU124 TYR125 THR126 ASP127 SER128 LEU129 MET130 ASP131 PRO132 ALA133 ILE134 LEU135 THR136 SER137 LEU138 SER139 SER140 ASN141 LEU142 ASN143 ALA144 VAL145 MET146 PHE147 TRP148 LEU149 GLU150 LYS151 HIS152 GLU153 ASN154 ASP155 VAL156 ALA157 GLU158 LYS159 LEU160 LYS161 VAL162 TYR163 LYS164 ARG165 ARG166 LEU167 ASP168 LEU169 PHE170 THR171 ILE172 VAL173 ALA174 SER175 THR176 ILE177 ASN178 LYS179 TYR180 GLY181 VAL182 PRO183 ARG184 HIS185 ASN186 ALA187 LYS188 TYR189 ARG190 TYR191 GLU192 TYR193 ASP194 VAL195 MET196 LYS197 ASP198 LYS199 PRO200 TYR201 TYR202 LEU203 VAL204 THR205 TRP206 ALA207 ASN208 SER209 SER210 ILE211 GLU212 MET213 LEU214 MET215 SER216 VAL217 PHE218 SER219 HIS220 ASP221 ASP222 TYR223 LEU224 ILE225 ALA226 LYS227 GLU228 LEU229 ILE230 VAL231 LEU232 SER233 TYR234 SER235 ASN236 ARG237 SER238 THR239 LEU240 ALA241 LYS242 LEU243 VAL244 SER245 SER246 PRO247 MET248 SER249 ILE250 LEU251 VAL252 ALA253 LEU254 VAL255 ASP256 ILE257 ASN258 GLY259 THR260 PHE261 ILE262 THR263 ASN264 GLU265 GLU266 LEU267 GLU268 LEU269 GLU270 PHE271 SER272 ASN273 LYS274 TYR275 VAL276 ARG277 ALA278 ILE279 VAL280 PRO281 ASP282 GLN283 THR284 PHE285 ASP286 GLU287 LEU288 ASN289 GLN290 MET291 LEU292 ASP293 ASN294 MET295 ARG296 LYS297 ALA298 GLY299 LEU300 VAL301 ASP302 ILE303 PRO304 LYS305 MET306 ILE307 GLN308 ASP309 TRP310 LEU311 VAL312 ASP313 ARG314 SER315 ILE316 GLU317 LYS318 PHE319 PRO320 LEU321 MET322 ALA323 LYS324 ILE325 TYR326 SER327 TRP328 SER329 PHE330 HIS331 VAL332 GLY333 PHE334 ARG335 LYS336 GLN337 LYS338 MET339 LEU340 ASP341 ALA342 ALA343 LEU344 ASP345 GLN346 GLU358 MET359 TYR360 ARG361 GLU362 TYR363 THR364 MET365 LEU366 ILE367 ARG368 ASP369 GLU370 VAL371 VAL372 LYS373 MET374 LEU375 GLU376 GLU377 PRO378 VAL379 LYS380 HIS381 ASP382 ASP383 HIS384 LEU385 LEU386 ARG387 ASP388 SER389 GLU390 LEU391 ALA392 GLY393 LEU394 LEU395 SER396 MET397 SER398 SER399 ALA400 SER401 ASN402 GLY403 GLU404 SER405 ARG406 GLN407 LEU408 LYS409 PHE410 GLY411 ARG412 LYS413 THR414 ILE415 PHE416 SER417 THR418 LYS419 LYS420 ASN421 MET422 HIS423 VAL424 MET425 ASP426 ASP427 MET428 ALA429 ASN430 GLU431 ARG432 TYR433 THR434 PRO435 GLY436 ILE437 ILE438 PRO439 PRO440 VAL441 ASN442 VAL443 ASP444 LYS445 PRO446 ILE447 PRO448 LEU449 GLY450 ARG451 ARG452 ASP453 VAL454 PRO455 GLY456 ARG457 ARG458 THR459 ARG460 ILE461 ILE462 PHE463 ILE464 LEU465 PRO466 TYR467 GLU468 TYR469 PHE470 ILE471 ALA472 GLN473 HIS474 ALA475 VAL476 VAL477 GLU478 LYS479 MET480 LEU481 ILE482 TYR483 ALA484 LYS485 HIS486 THR487 ARG488 GLU489 TYR490 ALA491 GLU492 PHE493 TYR494 SER495 GLN496 SER497 ASN498 GLN499 LEU500 LEU501 SER502 TYR503 GLY504 ASP505 VAL506 THR507 ARG508 PHE509 LEU510 SER511 ASN512 ASN513 THR514 MET515 VAL516 LEU517 TYR518 THR519 ASP520 VAL521 SER522 GLN523 TRP524 ASP525 SER526 SER527 GLN528 HIS529 ASN530 THR531 GLN532 PRO533 PHE534 ARG535 LYS536 GLY537 ILE538 ILE539 MET540 GLY541 LEU542 ASP543 ILE544 LEU545 ALA546 ASN547 MET548 THR549 ASN550 ASP551 ALA552 LYS553 VAL554 LEU555 GLN556 THR557 LEU558 ASN559 LEU560 TYR561 LYS562 GLN563 THR564 GLN565 ILE566 ASN567 LEU568 MET569 ASP570 SER571 TYR572 VAL573 GLN574 ILE575 PRO576 ASP577 GLY578 ASN579 VAL580 ILE581 LYS582 LYS583 ILE584 GLN585 TYR586 GLY587 ALA588 VAL589 ALA590 SER591 GLY592 GLU593 LYS594 GLN595 THR596 LYS597 ALA598 ALA599 ASN600 SER601 ILE602 ALA603 ASN604 LEU605 ALA606 LEU607 ILE608 LYS609 THR610 VAL611 LEU612 SER613 ARG614 ILE615 SER616 ASN617 LYS618 HIS619 SER620 PHE621 ALA622 THR623 LYS624 ILE625 ILE626 ARG627 VAL628 ASP629 GLY630 ASP631 ASP632 ASN633 TYR634 ALA635 VAL636 LEU637 GLN638 PHE639 ASN640 THR641 GLU642 VAL643 THR644 LYS645 GLN646 MET647 ILE648 GLN649 ASP650 VAL651 SER652 ASN653 ASP654 VAL655 ARG656 GLU657 THR658 TYR659 ALA660 ARG661 MET662 ASN663 ALA664 LYS665 VAL666 LYS667 ALA668 LEU669 VAL670 SER671 THR672 VAL673 GLY674 ILE675 GLU676 ILE677 ALA678 LYS679 ARG680 TYR681 ILE682 ALA683 GLY684 GLY685 LYS686 ILE687 PHE688 PHE689 ARG690 ALA691 GLY692 ILE693 ASN694 LEU695 LEU696 ASN697 ASN698 GLU699 LYS700 ARG701 GLY702 GLN703 SER704 THR705 GLN706 TRP707 ASP708 GLN709 ALA710 ALA711 ILE712 LEU713 TYR714 SER715 ASN716 TYR717 ILE718 VAL719 ASN720 ARG721 LEU722 ARG723 GLY724 PHE725 GLU726 THR727 ASP728 ARG729 GLU730 PHE731 ILE732 LEU733 THR734 LYS735 ILE736 MET737 GLN738 MET739 THR740 SER741 VAL742 ALA743 ILE744 THR745 GLY746 SER747 LEU748 ARG749 LEU750 PHE751 PRO752 SER753 GLU754 ARG755 VAL756 LEU757 THR758 THR759 ASN760 SER761 THR762 PHE763 LYS764 VAL765 PHE766 ASP767 SER768 GLU769 ASP770 PHE771 ILE772 ILE773 GLU774 TYR775 GLY776 THR777 THR778 VAL779 ASP780 GLU781 VAL782 TYR783 ILE784 GLN785 ARG786 ALA787 PHE788 MET789 SER790 LEU791 SER792 SER793 GLN794 LYS795 SER796 GLY797 ILE798 ALA799 ASP800 GLU801 ILE802 ALA803 ALA804 SER805 SER806 THR807 PHE808 LYS809 ASN810 TYR811 VAL812 THR813 ARG814 LEU815 SER816 GLU817 GLN818 LEU819 LEU820 PHE821 SER822 LYS823 ASN824 ASN825 ILE826 VAL827 SER828 ARG829 GLY830 ILE831 ALA832 LEU833 THR834 GLU835 LYS836 ALA837 LYS838 LEU839 ASN840 SER841 TYR842 ALA843 PRO844 ILE845 SER846 LEU847 GLU848 LYS849 ARG850 ARG851 ALA852 GLN853 ILE854 SER855 ALA856 LEU857 LEU858 THR859 MET860 LEU861 GLN862 LYS863 PRO864 VAL865 THR866 PHE867 LYS868 SER869 SER870 LYS871 ILE872 THR873 ILE874 ASN875 ASP876 ILE877 LEU878 ARG879 ASP880 ILE881 LYS882 PRO883 PHE884 PHE885 THR886 VAL887 SER888 ASP889 ALA890 HIS891 LEU892 PRO893 ILE894 GLN895 TYR896 GLN897 LYS898 PHE899 MET900 PRO901 THR902 LEU903 PRO904 ASP905 ASN906 VAL907 GLN908 TYR909 ILE910 ILE911 GLN912 CYS913 ILE914 GLY915 SER916 ARG917 THR918 TYR919 GLN920 ILE921 GLU922 ASP923 ASP924 GLY925 SER926 LYS927 SER928 ALA929 ILE930 SER931 ARG932 LEU933 ILE934 SER935 LYS936 TYR937 SER938 VAL939 TYR940 LYS941 PRO942 SER943 ILE944 GLU945 GLU946 LEU947 TYR948 LYS949 VAL950 ILE951 SER952 LEU953 HIS954 GLU955 ASN956 GLU957 ILE958 GLN959 LEU960 TYR961 LEU962 ILE963 SER964 LEU965 GLY966 ILE967 PRO968 LYS969 ILE970 ASP971 ALA972 ASP973 THR974 TYR975 VAL976 GLY977 SER978 LYS979 ILE980 TYR981 SER982 ARG983 ASP984 LYS985 TYR986 ARG987 ILE988 LEU989 GLU990 SER991 TYR992 VAL993 TYR994 ASN995 LEU996 LEU997 SER998 ILE999 ASN1000 TYR1001 GLY1002 CYS1003 TYR1004 GLN1005 LEU1006 PHE1007 ASP1008 PHE1009 ASN1010 SER1011 PRO1012 ASP1013 LEU1014 GLU1015 LYS1016 LEU1017 ILE1018 ARG1019 ILE1020 PRO1021 PHE1022 LYS1023 GLY1024 LYS1025 ILE1026 PRO1027 ALA1028 VAL1029 THR1030 PHE1031 ILE1032 LEU1033 HIS1034 LEU1035 TYR1036 ALA1037 LYS1038 LEU1039 GLU1040 VAL1041 ILE1042 ASN1043 TYR1044 ALA1045 ILE1046 LYS1047 ASN1048 GLY1049 SER1050 TRP1051 ILE1052 SER1053 LEU1054 PHE1055 CYS1056 ASN1057 TYR1058 PRO1059 LYS1060 SER1061 GLU1062 MET1063 ILE1064 LYS1065 LEU1066 TRP1067 LYS1068 LYS1069 MET1070 TRP1071 ASN1072 ILE1073 THR1074 SER1075 LEU1076 ARG1077 SER1078 PRO1079 TYR1080 THR1081 ASN1082 ALA1083 ASN1084 PHE1085 PHE1086 GLN1087 GLU1088
Nucleic acids
Unit 1 U1101 G1102 U1103 G1104 A1105 C1106 C1107
Ligands
Unit 3 GTP1201
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany