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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A QUORUM-QUENCHING LACTONASE (AIIB) FROM AGROBA TUMEFACIENS
Keywords LACTONASE, N-ACYL HOMPSERINE LACTONE, DI-NUCLEAR ZINC CENTER QUENCHING, AIIB, PHOSPHATE, AGROBACTERIUM TUMEFACIENS, HYDR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2R2D     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ZN-DEPENDENT HYDROLASES  A 276 2154 0
2  Protein   ZN-DEPENDENT HYDROLASES  B 276 2154 0
3  Protein   ZN-DEPENDENT HYDROLASES  C 276 2154 0
4  Protein   ZN-DEPENDENT HYDROLASES  D 276 2154 0
5  Protein   ZN-DEPENDENT HYDROLASES  E 276 2154 0
6  Protein   ZN-DEPENDENT HYDROLASES  F 276 2154 0
7  Ligand   ZN-DEPENDENT HYDROLASES  A 6 0 25
8  Ligand   ZN-DEPENDENT HYDROLASES  B 6 0 24
9  Ligand   ZN-DEPENDENT HYDROLASES  C 6 0 24
10  Ligand   ZN-DEPENDENT HYDROLASES  D 4 0 13
11  Ligand   ZN-DEPENDENT HYDROLASES  E 5 0 18
12  Ligand   ZN-DEPENDENT HYDROLASES  F 4 0 13
13 Water     1521 0 1521
total       3208 12924 1638

Proteins
Unit 1 MET1 GLY2 ASN3 LYS4 LEU5 PHE6 VAL7 LEU8 ASP9 LEU10 GLY11 GLU12 ILE13 ARG14 VAL15 ASP16 GLU17 ASN18 PHE19 ILE20 ILE21 ALA22 ASN23 SER24 THR25 PHE26 VAL27 THR28 PRO29 GLN30 LYS31 PRO32 THR33 VAL34 SER35 SER36 ARG37 LEU38 ILE39 ASP40 ILE41 PRO42 VAL43 SER44 ALA45 TYR46 LEU47 ILE48 GLN49 CYS50 THR51 ASP52 ALA53 THR54 VAL55 LEU56 TYR57 ASP58 THR59 GLY60 CYS61 HIS62 PRO63 GLU64 CYS65 MET66 GLY67 THR68 ASN69 GLY70 ARG71 TRP72 PRO73 ALA74 GLN75 SER76 GLN77 LEU78 ASN79 ALA80 PRO81 TYR82 ILE83 GLY84 ALA85 SER86 GLU87 CYS88 ASN89 LEU90 PRO91 GLU92 ARG93 LEU94 ARG95 GLN96 LEU97 GLY98 LEU99 SER100 PRO101 ASP102 ASP103 ILE104 SER105 THR106 VAL107 VAL108 LEU109 SER110 HIS111 LEU112 HIS113 ASN114 ASP115 HIS116 ALA117 GLY118 CYS119 VAL120 GLU121 TYR122 PHE123 GLY124 LYS125 SER126 ARG127 LEU128 ILE129 ALA130 HIS131 GLU132 ASP133 GLU134 PHE135 ALA136 THR137 ALA138 VAL139 ARG140 TYR141 PHE142 ALA143 THR144 GLY145 ASP146 HIS147 SER148 SER149 PRO150 TYR151 ILE152 VAL153 LYS154 ASP155 ILE156 GLU157 ALA158 TRP159 LEU160 ALA161 THR162 PRO163 ARG164 ASN165 TRP166 ASP167 LEU168 VAL169 GLY170 ARG171 ASP172 GLU173 ARG174 GLU175 ARG176 GLU177 LEU178 ALA179 PRO180 GLY181 VAL182 ASN183 LEU184 LEU185 ASN186 PHE187 GLY188 THR189 GLY190 HIS191 ALA192 SER193 GLY194 MET195 LEU196 GLY197 LEU198 ALA199 VAL200 ARG201 LEU202 GLU203 LYS204 GLN205 PRO206 GLY207 PHE208 LEU209 LEU210 VAL211 SER212 ASP213 ALA214 CYS215 TYR216 THR217 ALA218 THR219 ASN220 TYR221 GLY222 PRO223 PRO224 ALA225 ARG226 ARG227 ALA228 GLY229 VAL230 LEU231 HIS232 ASP233 THR234 ILE235 GLY236 TYR237 ASP238 ARG239 THR240 VAL241 SER242 HIS243 ILE244 ARG245 GLN246 TYR247 ALA248 GLU249 SER250 ARG251 SER252 LEU253 THR254 VAL255 LEU256 PHE257 GLY258 HIS259 ASP260 ARG261 GLU262 GLN263 PHE264 ALA265 SER266 LEU267 ILE268 LYS269 SER270 THR271 ASP272 GLY273 PHE274 TYR275 GLU276
Unit 2 MET1 GLY2 ASN3 LYS4 LEU5 PHE6 VAL7 LEU8 ASP9 LEU10 GLY11 GLU12 ILE13 ARG14 VAL15 ASP16 GLU17 ASN18 PHE19 ILE20 ILE21 ALA22 ASN23 SER24 THR25 PHE26 VAL27 THR28 PRO29 GLN30 LYS31 PRO32 THR33 VAL34 SER35 SER36 ARG37 LEU38 ILE39 ASP40 ILE41 PRO42 VAL43 SER44 ALA45 TYR46 LEU47 ILE48 GLN49 CYS50 THR51 ASP52 ALA53 THR54 VAL55 LEU56 TYR57 ASP58 THR59 GLY60 CYS61 HIS62 PRO63 GLU64 CYS65 MET66 GLY67 THR68 ASN69 GLY70 ARG71 TRP72 PRO73 ALA74 GLN75 SER76 GLN77 LEU78 ASN79 ALA80 PRO81 TYR82 ILE83 GLY84 ALA85 SER86 GLU87 CYS88 ASN89 LEU90 PRO91 GLU92 ARG93 LEU94 ARG95 GLN96 LEU97 GLY98 LEU99 SER100 PRO101 ASP102 ASP103 ILE104 SER105 THR106 VAL107 VAL108 LEU109 SER110 HIS111 LEU112 HIS113 ASN114 ASP115 HIS116 ALA117 GLY118 CYS119 VAL120 GLU121 TYR122 PHE123 GLY124 LYS125 SER126 ARG127 LEU128 ILE129 ALA130 HIS131 GLU132 ASP133 GLU134 PHE135 ALA136 THR137 ALA138 VAL139 ARG140 TYR141 PHE142 ALA143 THR144 GLY145 ASP146 HIS147 SER148 SER149 PRO150 TYR151 ILE152 VAL153 LYS154 ASP155 ILE156 GLU157 ALA158 TRP159 LEU160 ALA161 THR162 PRO163 ARG164 ASN165 TRP166 ASP167 LEU168 VAL169 GLY170 ARG171 ASP172 GLU173 ARG174 GLU175 ARG176 GLU177 LEU178 ALA179 PRO180 GLY181 VAL182 ASN183 LEU184 LEU185 ASN186 PHE187 GLY188 THR189 GLY190 HIS191 ALA192 SER193 GLY194 MET195 LEU196 GLY197 LEU198 ALA199 VAL200 ARG201 LEU202 GLU203 LYS204 GLN205 PRO206 GLY207 PHE208 LEU209 LEU210 VAL211 SER212 ASP213 ALA214 CYS215 TYR216 THR217 ALA218 THR219 ASN220 TYR221 GLY222 PRO223 PRO224 ALA225 ARG226 ARG227 ALA228 GLY229 VAL230 LEU231 HIS232 ASP233 THR234 ILE235 GLY236 TYR237 ASP238 ARG239 THR240 VAL241 SER242 HIS243 ILE244 ARG245 GLN246 TYR247 ALA248 GLU249 SER250 ARG251 SER252 LEU253 THR254 VAL255 LEU256 PHE257 GLY258 HIS259 ASP260 ARG261 GLU262 GLN263 PHE264 ALA265 SER266 LEU267 ILE268 LYS269 SER270 THR271 ASP272 GLY273 PHE274 TYR275 GLU276
Unit 3 MET1 GLY2 ASN3 LYS4 LEU5 PHE6 VAL7 LEU8 ASP9 LEU10 GLY11 GLU12 ILE13 ARG14 VAL15 ASP16 GLU17 ASN18 PHE19 ILE20 ILE21 ALA22 ASN23 SER24 THR25 PHE26 VAL27 THR28 PRO29 GLN30 LYS31 PRO32 THR33 VAL34 SER35 SER36 ARG37 LEU38 ILE39 ASP40 ILE41 PRO42 VAL43 SER44 ALA45 TYR46 LEU47 ILE48 GLN49 CYS50 THR51 ASP52 ALA53 THR54 VAL55 LEU56 TYR57 ASP58 THR59 GLY60 CYS61 HIS62 PRO63 GLU64 CYS65 MET66 GLY67 THR68 ASN69 GLY70 ARG71 TRP72 PRO73 ALA74 GLN75 SER76 GLN77 LEU78 ASN79 ALA80 PRO81 TYR82 ILE83 GLY84 ALA85 SER86 GLU87 CYS88 ASN89 LEU90 PRO91 GLU92 ARG93 LEU94 ARG95 GLN96 LEU97 GLY98 LEU99 SER100 PRO101 ASP102 ASP103 ILE104 SER105 THR106 VAL107 VAL108 LEU109 SER110 HIS111 LEU112 HIS113 ASN114 ASP115 HIS116 ALA117 GLY118 CYS119 VAL120 GLU121 TYR122 PHE123 GLY124 LYS125 SER126 ARG127 LEU128 ILE129 ALA130 HIS131 GLU132 ASP133 GLU134 PHE135 ALA136 THR137 ALA138 VAL139 ARG140 TYR141 PHE142 ALA143 THR144 GLY145 ASP146 HIS147 SER148 SER149 PRO150 TYR151 ILE152 VAL153 LYS154 ASP155 ILE156 GLU157 ALA158 TRP159 LEU160 ALA161 THR162 PRO163 ARG164 ASN165 TRP166 ASP167 LEU168 VAL169 GLY170 ARG171 ASP172 GLU173 ARG174 GLU175 ARG176 GLU177 LEU178 ALA179 PRO180 GLY181 VAL182 ASN183 LEU184 LEU185 ASN186 PHE187 GLY188 THR189 GLY190 HIS191 ALA192 SER193 GLY194 MET195 LEU196 GLY197 LEU198 ALA199 VAL200 ARG201 LEU202 GLU203 LYS204 GLN205 PRO206 GLY207 PHE208 LEU209 LEU210 VAL211 SER212 ASP213 ALA214 CYS215 TYR216 THR217 ALA218 THR219 ASN220 TYR221 GLY222 PRO223 PRO224 ALA225 ARG226 ARG227 ALA228 GLY229 VAL230 LEU231 HIS232 ASP233 THR234 ILE235 GLY236 TYR237 ASP238 ARG239 THR240 VAL241 SER242 HIS243 ILE244 ARG245 GLN246 TYR247 ALA248 GLU249 SER250 ARG251 SER252 LEU253 THR254 VAL255 LEU256 PHE257 GLY258 HIS259 ASP260 ARG261 GLU262 GLN263 PHE264 ALA265 SER266 LEU267 ILE268 LYS269 SER270 THR271 ASP272 GLY273 PHE274 TYR275 GLU276
Unit 4 MET1 GLY2 ASN3 LYS4 LEU5 PHE6 VAL7 LEU8 ASP9 LEU10 GLY11 GLU12 ILE13 ARG14 VAL15 ASP16 GLU17 ASN18 PHE19 ILE20 ILE21 ALA22 ASN23 SER24 THR25 PHE26 VAL27 THR28 PRO29 GLN30 LYS31 PRO32 THR33 VAL34 SER35 SER36 ARG37 LEU38 ILE39 ASP40 ILE41 PRO42 VAL43 SER44 ALA45 TYR46 LEU47 ILE48 GLN49 CYS50 THR51 ASP52 ALA53 THR54 VAL55 LEU56 TYR57 ASP58 THR59 GLY60 CYS61 HIS62 PRO63 GLU64 CYS65 MET66 GLY67 THR68 ASN69 GLY70 ARG71 TRP72 PRO73 ALA74 GLN75 SER76 GLN77 LEU78 ASN79 ALA80 PRO81 TYR82 ILE83 GLY84 ALA85 SER86 GLU87 CYS88 ASN89 LEU90 PRO91 GLU92 ARG93 LEU94 ARG95 GLN96 LEU97 GLY98 LEU99 SER100 PRO101 ASP102 ASP103 ILE104 SER105 THR106 VAL107 VAL108 LEU109 SER110 HIS111 LEU112 HIS113 ASN114 ASP115 HIS116 ALA117 GLY118 CYS119 VAL120 GLU121 TYR122 PHE123 GLY124 LYS125 SER126 ARG127 LEU128 ILE129 ALA130 HIS131 GLU132 ASP133 GLU134 PHE135 ALA136 THR137 ALA138 VAL139 ARG140 TYR141 PHE142 ALA143 THR144 GLY145 ASP146 HIS147 SER148 SER149 PRO150 TYR151 ILE152 VAL153 LYS154 ASP155 ILE156 GLU157 ALA158 TRP159 LEU160 ALA161 THR162 PRO163 ARG164 ASN165 TRP166 ASP167 LEU168 VAL169 GLY170 ARG171 ASP172 GLU173 ARG174 GLU175 ARG176 GLU177 LEU178 ALA179 PRO180 GLY181 VAL182 ASN183 LEU184 LEU185 ASN186 PHE187 GLY188 THR189 GLY190 HIS191 ALA192 SER193 GLY194 MET195 LEU196 GLY197 LEU198 ALA199 VAL200 ARG201 LEU202 GLU203 LYS204 GLN205 PRO206 GLY207 PHE208 LEU209 LEU210 VAL211 SER212 ASP213 ALA214 CYS215 TYR216 THR217 ALA218 THR219 ASN220 TYR221 GLY222 PRO223 PRO224 ALA225 ARG226 ARG227 ALA228 GLY229 VAL230 LEU231 HIS232 ASP233 THR234 ILE235 GLY236 TYR237 ASP238 ARG239 THR240 VAL241 SER242 HIS243 ILE244 ARG245 GLN246 TYR247 ALA248 GLU249 SER250 ARG251 SER252 LEU253 THR254 VAL255 LEU256 PHE257 GLY258 HIS259 ASP260 ARG261 GLU262 GLN263 PHE264 ALA265 SER266 LEU267 ILE268 LYS269 SER270 THR271 ASP272 GLY273 PHE274 TYR275 GLU276
Unit 5 MET1 GLY2 ASN3 LYS4 LEU5 PHE6 VAL7 LEU8 ASP9 LEU10 GLY11 GLU12 ILE13 ARG14 VAL15 ASP16 GLU17 ASN18 PHE19 ILE20 ILE21 ALA22 ASN23 SER24 THR25 PHE26 VAL27 THR28 PRO29 GLN30 LYS31 PRO32 THR33 VAL34 SER35 SER36 ARG37 LEU38 ILE39 ASP40 ILE41 PRO42 VAL43 SER44 ALA45 TYR46 LEU47 ILE48 GLN49 CYS50 THR51 ASP52 ALA53 THR54 VAL55 LEU56 TYR57 ASP58 THR59 GLY60 CYS61 HIS62 PRO63 GLU64 CYS65 MET66 GLY67 THR68 ASN69 GLY70 ARG71 TRP72 PRO73 ALA74 GLN75 SER76 GLN77 LEU78 ASN79 ALA80 PRO81 TYR82 ILE83 GLY84 ALA85 SER86 GLU87 CYS88 ASN89 LEU90 PRO91 GLU92 ARG93 LEU94 ARG95 GLN96 LEU97 GLY98 LEU99 SER100 PRO101 ASP102 ASP103 ILE104 SER105 THR106 VAL107 VAL108 LEU109 SER110 HIS111 LEU112 HIS113 ASN114 ASP115 HIS116 ALA117 GLY118 CYS119 VAL120 GLU121 TYR122 PHE123 GLY124 LYS125 SER126 ARG127 LEU128 ILE129 ALA130 HIS131 GLU132 ASP133 GLU134 PHE135 ALA136 THR137 ALA138 VAL139 ARG140 TYR141 PHE142 ALA143 THR144 GLY145 ASP146 HIS147 SER148 SER149 PRO150 TYR151 ILE152 VAL153 LYS154 ASP155 ILE156 GLU157 ALA158 TRP159 LEU160 ALA161 THR162 PRO163 ARG164 ASN165 TRP166 ASP167 LEU168 VAL169 GLY170 ARG171 ASP172 GLU173 ARG174 GLU175 ARG176 GLU177 LEU178 ALA179 PRO180 GLY181 VAL182 ASN183 LEU184 LEU185 ASN186 PHE187 GLY188 THR189 GLY190 HIS191 ALA192 SER193 GLY194 MET195 LEU196 GLY197 LEU198 ALA199 VAL200 ARG201 LEU202 GLU203 LYS204 GLN205 PRO206 GLY207 PHE208 LEU209 LEU210 VAL211 SER212 ASP213 ALA214 CYS215 TYR216 THR217 ALA218 THR219 ASN220 TYR221 GLY222 PRO223 PRO224 ALA225 ARG226 ARG227 ALA228 GLY229 VAL230 LEU231 HIS232 ASP233 THR234 ILE235 GLY236 TYR237 ASP238 ARG239 THR240 VAL241 SER242 HIS243 ILE244 ARG245 GLN246 TYR247 ALA248 GLU249 SER250 ARG251 SER252 LEU253 THR254 VAL255 LEU256 PHE257 GLY258 HIS259 ASP260 ARG261 GLU262 GLN263 PHE264 ALA265 SER266 LEU267 ILE268 LYS269 SER270 THR271 ASP272 GLY273 PHE274 TYR275 GLU276
Unit 6 MET1 GLY2 ASN3 LYS4 LEU5 PHE6 VAL7 LEU8 ASP9 LEU10 GLY11 GLU12 ILE13 ARG14 VAL15 ASP16 GLU17 ASN18 PHE19 ILE20 ILE21 ALA22 ASN23 SER24 THR25 PHE26 VAL27 THR28 PRO29 GLN30 LYS31 PRO32 THR33 VAL34 SER35 SER36 ARG37 LEU38 ILE39 ASP40 ILE41 PRO42 VAL43 SER44 ALA45 TYR46 LEU47 ILE48 GLN49 CYS50 THR51 ASP52 ALA53 THR54 VAL55 LEU56 TYR57 ASP58 THR59 GLY60 CYS61 HIS62 PRO63 GLU64 CYS65 MET66 GLY67 THR68 ASN69 GLY70 ARG71 TRP72 PRO73 ALA74 GLN75 SER76 GLN77 LEU78 ASN79 ALA80 PRO81 TYR82 ILE83 GLY84 ALA85 SER86 GLU87 CYS88 ASN89 LEU90 PRO91 GLU92 ARG93 LEU94 ARG95 GLN96 LEU97 GLY98 LEU99 SER100 PRO101 ASP102 ASP103 ILE104 SER105 THR106 VAL107 VAL108 LEU109 SER110 HIS111 LEU112 HIS113 ASN114 ASP115 HIS116 ALA117 GLY118 CYS119 VAL120 GLU121 TYR122 PHE123 GLY124 LYS125 SER126 ARG127 LEU128 ILE129 ALA130 HIS131 GLU132 ASP133 GLU134 PHE135 ALA136 THR137 ALA138 VAL139 ARG140 TYR141 PHE142 ALA143 THR144 GLY145 ASP146 HIS147 SER148 SER149 PRO150 TYR151 ILE152 VAL153 LYS154 ASP155 ILE156 GLU157 ALA158 TRP159 LEU160 ALA161 THR162 PRO163 ARG164 ASN165 TRP166 ASP167 LEU168 VAL169 GLY170 ARG171 ASP172 GLU173 ARG174 GLU175 ARG176 GLU177 LEU178 ALA179 PRO180 GLY181 VAL182 ASN183 LEU184 LEU185 ASN186 PHE187 GLY188 THR189 GLY190 HIS191 ALA192 SER193 GLY194 MET195 LEU196 GLY197 LEU198 ALA199 VAL200 ARG201 LEU202 GLU203 LYS204 GLN205 PRO206 GLY207 PHE208 LEU209 LEU210 VAL211 SER212 ASP213 ALA214 CYS215 TYR216 THR217 ALA218 THR219 ASN220 TYR221 GLY222 PRO223 PRO224 ALA225 ARG226 ARG227 ALA228 GLY229 VAL230 LEU231 HIS232 ASP233 THR234 ILE235 GLY236 TYR237 ASP238 ARG239 THR240 VAL241 SER242 HIS243 ILE244 ARG245 GLN246 TYR247 ALA248 GLU249 SER250 ARG251 SER252 LEU253 THR254 VAL255 LEU256 PHE257 GLY258 HIS259 ASP260 ARG261 GLU262 GLN263 PHE264 ALA265 SER266 LEU267 ILE268 LYS269 SER270 THR271 ASP272 GLY273 PHE274 TYR275 GLU276

Ligands
Unit 7 ZN277 ZN278 PO4279 GOL280 GOL281 GOL282
Unit 8 ZN277 ZN278 PO4279 PO4280 GOL281 GOL282
Unit 9 ZN277 ZN278 PO4279 PO4280 GOL281 GOL282
Unit 10 ZN277 ZN278 PO4279 GOL280
Unit 11 ZN277 ZN278 PO4279 PO4280 GOL281
Unit 12 ZN277 ZN278 PO4279 GOL280

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany