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Title | NEUROPILIN-1 B1 DOMAIN IN COMPLEX WITH A VEGF-BLOCKING FAB | |
Keywords | VEGF RECEPTOR, SEMAPHORIN RECEPTOR, PHAGE-DERIVED ANTIBODY, ANGIOGENESIS, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, GLYCO HEPARAN SULFATE, MEMBRANE, NEUROGENESIS, PROTEOGLYCAN, SECR TRANSMEMBRANE, HORMONE, SIGNALING PROTEIN | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2QQN | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | NEUROPILIN-1 | A | 154 | 1228 | 0 |
2 | Protein | ANTIBODY HEAVY CHAIN | H | 226 | 1673 | 0 |
3 | Protein | ANTIBODY LIGHT CHAIN | L | 214 | 1639 | 0 |
4 | Ligand | NEUROPILIN-1 | A | 1 | 0 | 4 |
5 | Ligand | ANTIBODY HEAVY CHAIN | H | 1 | 0 | 4 |
6 | Ligand | ANTIBODY LIGHT CHAIN | L | 1 | 0 | 4 |
7 | Water | 249 | 0 | 249 | ||
total | 846 | 4540 | 261 |
Unit 1 | LYS274 CYS275 MET276 GLU277 ALA278 LEU279 GLY280 MET281 GLU282 SER283 GLY284 GLU285 ILE286 HIS287 SER288 ASP289 GLN290 ILE291 THR292 ALA293 SER294 SER295 GLN296 TYR297 SER298 THR299 ASN300 TRP301 SER302 ALA303 GLU304 ARG305 SER306 ARG307 LEU308 ASN309 TYR310 PRO311 GLU312 ASN313 GLY314 TRP315 THR316 PRO317 GLY318 GLU319 ASP320 SER321 TYR322 ARG323 GLU324 TRP325 ILE326 GLN327 VAL328 ASP329 LEU330 GLY331 LEU332 LEU333 ARG334 PHE335 VAL336 THR337 ALA338 VAL339 GLY340 THR341 GLN342 GLY343 ALA344 ILE345 SER346 LYS347 GLU348 THR349 LYS350 LYS351 LYS352 TYR353 TYR354 VAL355 LYS356 THR357 TYR358 LYS359 ILE360 ASP361 VAL362 SER363 SER364 ASN365 GLY366 GLU367 ASP368 TRP369 ILE370 THR371 ILE372 LYS373 GLU374 GLY375 ASN376 LYS377 PRO378 VAL379 LEU380 PHE381 GLN382 GLY383 ASN384 THR385 ASN386 PRO387 THR388 ASP389 VAL390 VAL391 VAL392 ALA393 VAL394 PHE395 PRO396 LYS397 PRO398 LEU399 ILE400 THR401 ARG402 PHE403 VAL404 ARG405 ILE406 LYS407 PRO408 ALA409 THR410 TRP411 GLU412 THR413 GLY414 ILE415 SER416 MET417 ARG418 PHE419 GLU420 VAL421 TYR422 GLY423 CYS424 LYS425 ILE426 THR427 |
Unit 2 | GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 TYR32 ALA33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 SER49 GLN50 ILE51 SER52 PRO52A ALA53 GLY54 GLY55 TYR56 THR57 ASN58 TYR59 ALA60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ALA71 ASP72 THR73 SER74 LYS75 ASN76 THR77 ALA78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C ARG83 ALA84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 GLY95 GLU96 LEU97 PRO98 TYR99 TYR100 ARG100A MET100B SER100C LYS100D VAL100E MET100F ASP101 VAL102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214 SER215 CYS216 ASP217 LYS218 THR219 HIS220 |
Unit 3 | ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 TYR28 PHE29 SER30 SER31 TYR32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 GLY50 ALA51 SER52 SER53 ARG54 ALA55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 TYR91 LEU92 GLY93 SER94 PRO95 PRO96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214 |
Unit 4 | EDO3 |
Unit 5 | EDO221 |
Unit 6 | EDO215 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |