2QQN - Sequence, Chains, Asymmetric and Biological Units

• Title: NEUROPILIN-1 B1 DOMAIN IN COMPLEX WITH A VEGF-BLOCKING FAB
• Keywords: VEGF RECEPTOR, SEMAPHORIN RECEPTOR, PHAGE-DERIVED ANTIBODY, ANGIOGENESIS, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, GLYCO HEPARAN SULFATE, MEMBRANE, NEUROGENESIS, PROTEOGLYCAN, SECR TRANSMEMBRANE, HORMONE, SIGNALING PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2QQN	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NEUROPILIN-1	A	154	1228	0
2	Protein	ANTIBODY HEAVY CHAIN	H	226	1673	0
3	Protein	ANTIBODY LIGHT CHAIN	L	214	1639	0
4	Ligand	NEUROPILIN-1	A	1	0	4
5	Ligand	ANTIBODY HEAVY CHAIN	H	1	0	4
6	Ligand	ANTIBODY LIGHT CHAIN	L	1	0	4
7	Water			249	0	249
total				846	4540	261

Proteins

Unit 1	LYS 274 CYS 275 MET 276 GLU 277 ALA 278 LEU 279 GLY 280 MET 281 GLU 282 SER 283 GLY 284 GLU 285 ILE 286 HIS 287 SER 288 ASP 289 GLN 290 ILE 291 THR 292 ALA 293 SER 294 SER 295 GLN 296 TYR 297 SER 298 THR 299 ASN 300 TRP 301 SER 302 ALA 303 GLU 304 ARG 305 SER 306 ARG 307 LEU 308 ASN 309 TYR 310 PRO 311 GLU 312 ASN 313 GLY 314 TRP 315 THR 316 PRO 317 GLY 318 GLU 319 ASP 320 SER 321 TYR 322 ARG 323 GLU 324 TRP 325 ILE 326 GLN 327 VAL 328 ASP 329 LEU 330 GLY 331 LEU 332 LEU 333 ARG 334 PHE 335 VAL 336 THR 337 ALA 338 VAL 339 GLY 340 THR 341 GLN 342 GLY 343 ALA 344 ILE 345 SER 346 LYS 347 GLU 348 THR 349 LYS 350 LYS 351 LYS 352 TYR 353 TYR 354 VAL 355 LYS 356 THR 357 TYR 358 LYS 359 ILE 360 ASP 361 VAL 362 SER 363 SER 364 ASN 365 GLY 366 GLU 367 ASP 368 TRP 369 ILE 370 THR 371 ILE 372 LYS 373 GLU 374 GLY 375 ASN 376 LYS 377 PRO 378 VAL 379 LEU 380 PHE 381 GLN 382 GLY 383 ASN 384 THR 385 ASN 386 PRO 387 THR 388 ASP 389 VAL 390 VAL 391 VAL 392 ALA 393 VAL 394 PHE 395 PRO 396 LYS 397 PRO 398 LEU 399 ILE 400 THR 401 ARG 402 PHE 403 VAL 404 ARG 405 ILE 406 LYS 407 PRO 408 ALA 409 THR 410 TRP 411 GLU 412 THR 413 GLY 414 ILE 415 SER 416 MET 417 ARG 418 PHE 419 GLU 420 VAL 421 TYR 422 GLY 423 CYS 424 LYS 425 ILE 426 THR 427
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 ALA 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 GLN 50 ILE 51 SER 52 PRO 52A ALA 53 GLY 54 GLY 55 TYR 56 THR 57 ASN 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 GLY 95 GLU 96 LEU 97 PRO 98 TYR 99 TYR 100 ARG 100A MET 100B SER 100C LYS 100D VAL 100E MET 100F ASP 101 VAL 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 GLY 133 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214 SER 215 CYS 216 ASP 217 LYS 218 THR 219 HIS 220
Unit 3	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 TYR 28 PHE 29 SER 30 SER 31 TYR 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 GLY 50 ALA 51 SER 52 SER 53 ARG 54 ALA 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 LEU 92 GLY 93 SER 94 PRO 95 PRO 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212 GLU 213 CYS 214

Ligands

Unit 4	EDO 3
Unit 5	EDO 221
Unit 6	EDO 215