2QQM - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE A2B1B2 DOMAINS FROM HUMAN NEUROPILI
• Keywords: VEGF RECEPTOR, SEMAPHORIN RECEPTOR, CALCIUM-BINDING DOMAIN, ANGIOGENESIS, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, GLYCO HEPARAN SULFATE, MEMBRANE, NEUROGENESIS, PROTEOGLYCAN, SECR TRANSMEMBRANE, HORMONE, SIGNALING PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2QQM	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NEUROPILIN-1	A	436	3456	0
2	Ligand		B	4	0	48
3	Ligand		C	2	0	28
4	Ligand	NEUROPILIN-1	A	7	0	25
5	Water			194	0	194
total				643	3456	295

Proteins

Unit 1

PRO 145 GLU 146 CYS 147 SER 148 GLN 149 ASN 150 TYR 151 THR 152 THR 153 PRO 154 SER 155 GLY 156 VAL 157 ILE 158 LYS 159 SER 160 PRO 161 GLY 162 PHE 163 PRO 164 GLU 165 LYS 166 TYR 167 PRO 168 ASN 169 SER 170 LEU 171 GLU 172 CYS 173 THR 174 TYR 175 ILE 176 VAL 177 PHE 178 ALA 179 PRO 180 LYS 181 MET 182 SER 183 GLU 184 ILE 185 ILE 186 LEU 187 GLU 188 PHE 189 GLU 190 SER 191 PHE 192 ASP 193 LEU 194 GLU 195 PRO 196 ASP 197 GLY 202 GLY 203 MET 204 PHE 205 CYS 206 ARG 207 TYR 208 ASP 209 ARG 210 LEU 211 GLU 212 ILE 213 TRP 214 ASP 215 GLY 216 PHE 217 PRO 218 ASP 219 VAL 220 GLY 221 PRO 222 HIS 223 ILE 224 GLY 225 ARG 226 TYR 227 CYS 228 GLY 229 GLN 230 LYS 231 THR 232 PRO 233 GLY 234 ARG 235 ILE 236 ARG 237 SER 238 SER 239 SER 240 GLY 241 ILE 242 LEU 243 SER 244 MET 245 VAL 246 PHE 247 TYR 248 THR 249 ASP 250 SER 251 ALA 252 ILE 253 ALA 254 LYS 255 GLU 256 GLY 257 PHE 258 SER 259 ALA 260 ASN 261 TYR 262 SER 263 VAL 264 LEU 265 GLN 266 SER 267 SER 268 VAL 269 SER 270 PHE 273 LYS 274 CYS 275 MET 276 GLU 277 ALA 278 LEU 279 GLY 280 MET 281 GLU 282 SER 283 GLY 284 GLU 285 ILE 286 HIS 287 SER 288 ASP 289 GLN 290 ILE 291 THR 292 ALA 293 SER 294 SER 295 GLN 296 TYR 297 SER 298 THR 299 ASN 300 TRP 301 SER 302 ALA 303 GLU 304 ARG 305 SER 306 ARG 307 LEU 308 ASN 309 TYR 310 PRO 311 GLU 312 ASN 313 GLY 314 TRP 315 THR 316 PRO 317 GLY 318 GLU 319 ASP 320 SER 321 TYR 322 ARG 323 GLU 324 TRP 325 ILE 326 GLN 327 VAL 328 ASP 329 LEU 330 GLY 331 LEU 332 LEU 333 ARG 334 PHE 335 VAL 336 THR 337 ALA 338 VAL 339 GLY 340 THR 341 GLN 342 GLY 343 ALA 344 ILE 345 SER 346 LYS 347 GLU 348 THR 349 LYS 350 LYS 351 LYS 352 TYR 353 TYR 354 VAL 355 LYS 356 THR 357 TYR 358 LYS 359 ILE 360 ASP 361 VAL 362 SER 363 SER 364 ASN 365 GLY 366 GLU 367 ASP 368 TRP 369 ILE 370 THR 371 ILE 372 LYS 373 GLU 374 GLY 375 ASN 376 LYS 377 PRO 378 VAL 379 LEU 380 PHE 381 GLN 382 GLY 383 ASN 384 THR 385 ASN 386 PRO 387 THR 388 ASP 389 VAL 390 VAL 391 VAL 392 ALA 393 VAL 394 PHE 395 PRO 396 LYS 397 PRO 398 LEU 399 ILE 400 THR 401 ARG 402 PHE 403 VAL 404 ARG 405 ILE 406 LYS 407 PRO 408 ALA 409 THR 410 TRP 411 GLU 412 THR 413 GLY 414 ILE 415 SER 416 MET 417 ARG 418 PHE 419 GLU 420 VAL 421 TYR 422 GLY 423 CYS 424 LYS 425 ILE 426 THR 427 ASP 428 TYR 429 PRO 430 CYS 431 SER 432 GLY 433 MET 434 LEU 435 GLY 436 MET 437 VAL 438 SER 439 GLY 440 LEU 441 ILE 442 SER 443 ASP 444 SER 445 GLN 446 ILE 447 THR 448 SER 449 SER 450 ASN 451 GLN 452 GLY 453 ASP 454 ARG 455 ASN 456 TRP 457 MET 458 PRO 459 GLU 460 ASN 461 ILE 462 ARG 463 LEU 464 VAL 465 THR 466 SER 467 ARG 468 SER 469 GLY 470 TRP 471 ALA 472 LEU 473 PRO 474 PRO 475 ALA 476 PRO 477 HIS 478 SER 479 TYR 480 ILE 481 ASN 482 GLU 483 TRP 484 LEU 485 GLN 486 ILE 487 ASP 488 LEU 489 GLY 490 GLU 491 GLU 492 LYS 493 ILE 494 VAL 495 ARG 496 GLY 497 ILE 498 ILE 499 ILE 500 GLN 501 GLY 502 GLY 503 LYS 504 HIS 505 ARG 506 GLU 507 ASN 508 LYS 509 VAL 510 PHE 511 MET 512 ARG 513 LYS 514 PHE 515 LYS 516 ILE 517 GLY 518 TYR 519 SER 520 ASN 521 ASN 522 GLY 523 SER 524 ASP 525 TRP 526 LYS 527 MET 528 ILE 529 MET 530 ASP 531 ASP 532 SER 533 LYS 534 ARG 535 LYS 536 ALA 537 LYS 538 SER 539 PHE 540 GLU 541 GLY 542 ASN 543 ASN 544 ASN 545 TYR 546 ASP 547 THR 548 PRO 549 GLU 550 LEU 551 ARG 552 THR 553 PHE 554 PRO 555 ALA 556 LEU 557 SER 558 THR 559 ARG 560 PHE 561 ILE 562 ARG 563 ILE 564 TYR 565 PRO 566 GLU 567 ARG 568 ALA 569 THR 570 HIS 571 GLY 572 GLY 573 LEU 574 GLY 575 LEU 576 ARG 577 MET 578 GLU 579 LEU 580 LEU 581 GLY 582 CYS 583 GLU 584 VAL 585 GLU 586

Ligands

Unit 2	NAG 1 FUC 2 NAG 3 FUC 4
Unit 3	NAG 1 NAG 2
Unit 4	CA 601 EDO 602 EDO 603 EDO 604 EDO 605 EDO 606 EDO 607