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Sequence, Chains, Asymmetric and Biological Units

Title NEUROPILIN-2 A1A2B1B2 DOMAINS IN COMPLEX WITH A SEMAPHORIN-B FAB
Keywords VEGF RECEPTOR, SEMAPHORIN RECEPTOR, PHAGE-DERIVED ANTIBODY, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, GLYCOPROTEIN, MEMBR NEUROGENESIS, TRANSMEMBRANE, HORMONE, SIGNALING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2QQL     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NEUROPILIN-2  A 554 4416 0
2  Protein   ANTIBODY HEAVY CHAIN  H 222 1682 0
3  Protein   ANTIBODY LIGHT CHAIN  L 214 1642 0
total       990 7740 0
Proteins
Unit 1 PRO26 PRO27 CYS28 GLY29 GLY30 ARG31 LEU32 ASN33 SER34 LYS35 ASP36 ALA37 GLY38 TYR39 ILE40 THR41 SER42 PRO43 GLY44 TYR45 PRO46 GLN47 ASP48 TYR49 PRO50 SER51 HIS52 GLN53 ASN54 CYS55 GLU56 TRP57 ILE58 VAL59 TYR60 ALA61 PRO62 GLU63 PRO64 ASN65 GLN66 LYS67 ILE68 VAL69 LEU70 ASN71 PHE72 ASN73 PRO74 HIS75 PHE76 GLU77 ILE78 GLU79 LYS80 HIS81 ASP82 CYS83 LYS84 TYR85 ASP86 PHE87 ILE88 GLU89 ILE90 ARG91 ASP92 GLY93 ASP94 SER95 GLU96 SER97 ALA98 ASP99 LEU100 LEU101 GLY102 LYS103 HIS104 CYS105 GLY106 ASN107 ILE108 ALA109 PRO110 PRO111 THR112 ILE113 ILE114 SER115 SER116 GLY117 SER118 MET119 LEU120 TYR121 ILE122 LYS123 PHE124 THR125 SER126 ASP127 TYR128 ALA129 ARG130 GLN131 GLY132 ALA133 GLY134 PHE135 SER136 LEU137 ARG138 TYR139 GLU140 ILE141 PHE142 LYS143 THR144 GLY145 SER146 GLU147 ASP148 CYS149 SER150 LYS151 ASN152 PHE153 THR154 SER155 PRO156 ASN157 GLY158 THR159 ILE160 GLU161 SER162 PRO163 GLY164 PHE165 PRO166 GLU167 LYS168 TYR169 PRO170 HIS171 ASN172 LEU173 ASP174 CYS175 THR176 PHE177 THR178 ILE179 LEU180 ALA181 LYS182 PRO183 LYS184 MET185 GLU186 ILE187 ILE188 LEU189 GLN190 PHE191 LEU192 ILE193 PHE194 ASP195 LEU196 CYS208 LYS209 TYR210 ASP211 TRP212 LEU213 ASP214 ILE215 TRP216 ASP217 GLY218 ILE219 PRO220 HIS221 VAL222 GLY223 PRO224 LEU225 ILE226 GLY227 LYS228 TYR229 CYS230 GLY231 THR232 LYS233 THR234 PRO235 SER236 GLU237 LEU238 ARG239 SER240 SER241 THR242 GLY243 ILE244 LEU245 SER246 LEU247 THR248 PHE249 HIS250 THR251 ASP252 MET253 ALA254 VAL255 ALA256 LYS257 ASP258 GLY259 PHE260 SER261 ALA262 ARG263 TYR264 TYR265 LEU266 VAL267 HIS268 GLN269 GLU270 PRO271 LEU272 GLU273 ASN274 PHE275 GLN276 CYS277 ASN278 VAL279 PRO280 LEU281 GLY282 MET283 GLU284 SER285 GLY286 ARG287 ILE288 ALA289 ASN290 GLU291 GLN292 ILE293 SER294 ALA295 SER296 SER297 THR298 TYR299 SER300 ASP301 GLY302 ARG303 TRP304 THR305 PRO306 GLN307 GLN308 SER309 ARG310 LEU311 HIS312 GLY313 ASP314 ASP315 ASN316 GLY317 TRP318 THR319 PRO320 ASN321 LEU322 ASP323 SER324 ASN325 LYS326 GLU327 TYR328 LEU329 GLN330 VAL331 ASP332 LEU333 ARG334 PHE335 LEU336 THR337 MET338 LEU339 THR340 ALA341 ILE342 ALA343 THR344 GLN345 GLY346 ALA347 ILE348 SER349 ARG350 GLU351 THR352 GLN353 ASN354 GLY355 TYR356 TYR357 VAL358 LYS359 SER360 TYR361 LYS362 LEU363 GLU364 VAL365 SER366 THR367 ASN368 GLY369 GLU370 ASP371 TRP372 MET373 VAL374 TYR375 ARG376 HIS377 GLY378 LYS379 ASN380 HIS381 LYS382 VAL383 PHE384 GLN385 ALA386 ASN387 ASN388 ASP389 ALA390 THR391 GLU392 VAL393 VAL394 LEU395 ASN396 LYS397 LEU398 HIS399 ALA400 PRO401 LEU402 LEU403 THR404 ARG405 PHE406 VAL407 ARG408 ILE409 ARG410 PRO411 GLN412 THR413 TRP414 HIS415 SER416 GLY417 ILE418 ALA419 LEU420 ARG421 LEU422 GLU423 LEU424 PHE425 GLY426 CYS427 ARG428 VAL429 THR430 ASP431 ALA432 PRO433 CYS434 SER435 ASN436 MET437 LEU438 GLY439 MET440 LEU441 SER442 GLY443 LEU444 ILE445 ALA446 ASP447 SER448 GLN449 ILE450 SER451 ALA452 SER453 SER454 THR455 GLN456 GLU457 TYR458 LEU459 TRP460 SER461 PRO462 SER463 ALA464 ALA465 ARG466 LEU467 VAL468 SER469 SER470 ARG471 SER472 GLY473 TRP474 PHE475 PRO476 ARG477 ILE478 PRO479 GLN480 ALA481 GLN482 PRO483 GLY484 GLU485 GLU486 TRP487 LEU488 GLN489 VAL490 ASP491 LEU492 GLY493 THR494 PRO495 LYS496 THR497 VAL498 LYS499 GLY500 VAL501 ILE502 ILE503 GLN504 GLY505 ALA506 ARG507 GLY508 ALA517 ARG518 ALA519 PHE520 VAL521 ARG522 LYS523 PHE524 LYS525 VAL526 SER527 TYR528 SER529 LEU530 ASN531 GLY532 LYS533 ASP534 TRP535 GLU536 TYR537 ILE538 GLN539 ASP540 PRO541 ARG542 THR543 GLN544 GLN545 PRO546 LYS547 LEU548 PHE549 GLU550 GLY551 ASN552 MET553 HIS554 TYR555 ASP556 THR557 PRO558 ASP559 ILE560 ARG561 ARG562 PHE563 ASP564 PRO565 ILE566 PRO567 ALA568 GLN569 TYR570 VAL571 ARG572 VAL573 TYR574 PRO575 GLU576 ARG577 TRP578 SER579 PRO580 ALA581 GLY582 ILE583 GLY584 MET585 ARG586 LEU587 GLU588 VAL589 LEU590 GLY591 CYS592 ASP593 TRP594 THR595 HIS599 HIS600 HIS601
Unit 2 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 ILE29 SER30 GLY31 TYR32 GLY33 ILE34 HIS35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 TYR50 ILE51 TYR52 PRO52A ASP53 SER54 GLY55 TYR56 THR57 ASP58 TYR59 ALA60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ALA71 ASP72 THR73 SER74 LYS75 ASN76 THR77 ALA78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C ARG83 ALA84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 GLU95 ASP96 PHE97 ARG98 ASN99 ARG100 ARG100A ARG100B LEU100C TRP100D TYR100E VAL100F MET100G ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214 SER215 CYS216
Unit 3 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 VAL29 SER30 THR31 ALA32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 ALA51 SER52 PHE53 LEU54 TYR55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 ALA91 TRP92 ALA93 TYR94 LEU95 PRO96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany