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Title | CRYSTAL STRUCTURE OF T4 ENDONUCLEASE VII N62D MUTANT IN COMP DNA HOLLIDAY JUNCTION | |
Keywords | T4 ENDONUCLEASE VII, ENDO VII, HOLLIDAY JUNCTION, FOUR-WAY J RESOLVASE, RESOLVING-ENZYME, ALTERNATIVE INITIATION, CALCIU HYDROLASE, METAL-BINDING, ZINC, HYDROLASE-DNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2QNC | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Other macromolecule | DNA (5'- D(*DCP*DG*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DGP*DGP*DAP*D *DGP*DGP*DGP*DAP*DTP*DCP*DC)-3') | C | 22 | 452 | 0 |
2 | Other macromolecule | DNA (5'- D(*DGP*DGP*DAP*DTP*DCP*DCP*DCP*DTP*DAP*DAP*DGP*DCP*DTP*DCP* P*DCP*DGP*DAP*DTP*DGP*DTP*DG)-3') | D | 24 | 487 | 0 |
3 | Other macromolecule | DNA (5'- D(*DCP*DAP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP* P*DTP*DAP*DGP*DGP*DCP*DCP*DT)-3') | E | 24 | 488 | 0 |
4 | Other macromolecule | DNA (5'- D(*DAP*DGP*DGP*DCP*DCP*DTP*DAP*DGP*DCP*DGP*DTP*DCP*DCP*DGP* P*DTP*DTP*DCP*DTP*DTP*DCP*DG)-3') | F | 23 | 466 | 0 |
5 | Protein | RECOMBINATION ENDONUCLEASE VII | A | 157 | 1272 | 0 |
6 | Protein | RECOMBINATION ENDONUCLEASE VII | B | 157 | 1272 | 0 |
7 | Ligand | DNA (5'- D(*DAP*DGP*DGP*DCP*DCP*DTP*DAP*DGP*DCP*DGP*DTP*DCP*DCP*DGP* P*DTP*DTP*DCP*DTP*DTP*DCP*DG)-3') | F | 1 | 0 | 1 |
8 | Ligand | RECOMBINATION ENDONUCLEASE VII | A | 2 | 0 | 2 |
9 | Ligand | RECOMBINATION ENDONUCLEASE VII | B | 3 | 0 | 9 |
10 | Water | 10 | 0 | 11 | ||
total | 423 | 4437 | 23 |
Unit 5 | MET1 LEU2 LEU3 THR4 GLY5 LYS6 LEU7 TYR8 LYS9 GLU10 GLU11 LYS12 GLN13 LYS14 PHE15 TYR16 ASP17 ALA18 GLN19 ASN20 GLY21 LYS22 CYS23 LEU24 ILE25 CYS26 GLN27 ARG28 GLU29 LEU30 ASN31 PRO32 ASP33 VAL34 GLN35 ALA36 ASN37 HIS38 LEU39 ASP40 HIS41 ASP42 HIS43 GLU44 LEU45 ASN46 GLY47 PRO48 LYS49 ALA50 GLY51 LYS52 VAL53 ARG54 GLY55 LEU56 LEU57 CYS58 ASN59 LEU60 CYS61 ASP62 ALA63 ALA64 GLU65 GLY66 GLN67 MET68 LYS69 HIS70 LYS71 PHE72 ASN73 ARG74 SER75 GLY76 LEU77 LYS78 GLY79 GLN80 GLY81 VAL82 ASP83 TYR84 LEU85 GLU86 TRP87 LEU88 GLU89 ASN90 LEU91 LEU92 THR93 TYR94 LEU95 LYS96 SER97 ASP98 TYR99 THR100 GLN101 ASN102 ASN103 ILE104 HIS105 PRO106 ASN107 PHE108 VAL109 GLY110 ASP111 LYS112 SER113 LYS114 GLU115 PHE116 SER117 ARG118 LEU119 GLY120 LYS121 GLU122 GLU123 MET124 MET125 ALA126 GLU127 MET128 LEU129 GLN130 ARG131 GLY132 PHE133 GLU134 TYR135 ASN136 GLU137 SER138 ASP139 THR140 LYS141 THR142 GLN143 LEU144 ILE145 ALA146 SER147 PHE148 LYS149 LYS150 GLN151 LEU152 ARG153 LYS154 SER155 LEU156 LYS157 |
Unit 6 | MET1 LEU2 LEU3 THR4 GLY5 LYS6 LEU7 TYR8 LYS9 GLU10 GLU11 LYS12 GLN13 LYS14 PHE15 TYR16 ASP17 ALA18 GLN19 ASN20 GLY21 LYS22 CYS23 LEU24 ILE25 CYS26 GLN27 ARG28 GLU29 LEU30 ASN31 PRO32 ASP33 VAL34 GLN35 ALA36 ASN37 HIS38 LEU39 ASP40 HIS41 ASP42 HIS43 GLU44 LEU45 ASN46 GLY47 PRO48 LYS49 ALA50 GLY51 LYS52 VAL53 ARG54 GLY55 LEU56 LEU57 CYS58 ASN59 LEU60 CYS61 ASP62 ALA63 ALA64 GLU65 GLY66 GLN67 MET68 LYS69 HIS70 LYS71 PHE72 ASN73 ARG74 SER75 GLY76 LEU77 LYS78 GLY79 GLN80 GLY81 VAL82 ASP83 TYR84 LEU85 GLU86 TRP87 LEU88 GLU89 ASN90 LEU91 LEU92 THR93 TYR94 LEU95 LYS96 SER97 ASP98 TYR99 THR100 GLN101 ASN102 ASN103 ILE104 HIS105 PRO106 ASN107 PHE108 VAL109 GLY110 ASP111 LYS112 SER113 LYS114 GLU115 PHE116 SER117 ARG118 LEU119 GLY120 LYS121 GLU122 GLU123 MET124 MET125 ALA126 GLU127 MET128 LEU129 GLN130 ARG131 GLY132 PHE133 GLU134 TYR135 ASN136 GLU137 SER138 ASP139 THR140 LYS141 THR142 GLN143 LEU144 ILE145 ALA146 SER147 PHE148 LYS149 LYS150 GLN151 LEU152 ARG153 LYS154 SER155 LEU156 LYS157 |
Unit 1 | DA3 DA4 DG5 DA6 DA7 DT8 DT9 DC10 DC11 DG12 DG13 DA14 DT15 DT16 DA17 DG18 DG19 DG20 DA21 DT22 DC23 DC24 |
Unit 2 | DG1 DG2 DA3 DT4 DC5 DC6 DC7 DT8 DA9 DA10 DG11 DC12 DT13 DC14 DC15 DA16 DT17 DC18 DG19 DA20 DT21 DG22 DT23 DG24 |
Unit 3 | DC1 DA2 DC3 DA4 DT5 DC6 DG7 DA8 DT9 DG10 DG11 DA12 DG13 DC14 DC15 DG16 DC17 DT18 DA19 DG20 DG21 DC22 DC23 DT24 |
Unit 4 | DA1 DG2 DG3 DC4 DC5 DT6 DA7 DG8 DC9 DG10 DT11 DC12 DC13 DG14 DG15 DA16 DA17 DT18 DT19 DC20 DT21 DT22 DC23 |
Unit 7 | MG24 |
Unit 8 | ZN158 MG159 |
Unit 9 | ZN158 EDO159 EDO160 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |