2QKM - Sequence, Chains, Asymmetric and Biological Units

• Title: THE CRYSTAL STRUCTURE OF FISSION YEAST MRNA DECAPPING ENZYME COMPLEX
• Keywords: PROTEIN-PROTEIN COMPLEX, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2QKM	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SPBC3B9.21 PROTEIN	A	123	1034	0
2	Protein	SPAC19A8.12 PROTEIN	B	266	2175	0
3	Protein	SPBC3B9.21 PROTEIN	C	123	1026	0
4	Protein	SPAC19A8.12 PROTEIN	D	202	1670	0
5	Protein	SPBC3B9.21 PROTEIN	E	123	1034	0
6	Protein	SPAC19A8.12 PROTEIN	F	262	2143	0
7	Protein	SPBC3B9.21 PROTEIN	G	127	1060	0
8	Protein	SPAC19A8.12 PROTEIN	H	190	1562	0
9	Ligand	SPAC19A8.12 PROTEIN	B	1	0	31
10	Ligand	SPAC19A8.12 PROTEIN	F	1	0	31
11	Water			108	0	108
total				1526	11704	170

Proteins

Unit 1	MET 1 GLU 2 ASP 3 GLU 4 ASN 5 ILE 6 LEU 7 ARG 8 ASN 9 ALA 10 VAL 11 ASN 12 LEU 13 GLN 14 VAL 15 LEU 16 LYS 17 PHE 18 HIS 19 TYR 20 PRO 21 GLU 22 ILE 23 GLU 24 SER 25 ILE 26 ILE 27 ASP 28 ILE 29 ALA 30 SER 31 HIS 32 VAL 33 ALA 34 VAL 35 TYR 36 GLN 37 PHE 38 ASP 39 LYS 44 TRP 45 LEU 46 LYS 47 THR 48 SER 49 ILE 50 GLU 51 GLY 52 THR 53 PHE 54 PHE 55 LEU 56 VAL 57 LYS 58 ASP 59 GLN 60 ARG 61 ALA 62 ARG 63 VAL 64 GLY 65 TYR 66 VAL 67 ILE 68 LEU 69 ASN 70 ARG 71 ASN 72 SER 73 PRO 74 GLU 75 ASN 76 LEU 77 TYR 78 LEU 79 PHE 80 ILE 81 ASN 82 HIS 83 PRO 84 SER 85 ASN 86 VAL 87 HIS 88 LEU 89 VAL 90 ASP 91 ARG 92 TYR 93 LEU 94 ILE 95 HIS 96 ARG 97 THR 98 GLU 99 ASN 100 GLN 101 HIS 102 VAL 103 VAL 104 GLY 105 LEU 106 TRP 107 MET 108 PHE 109 ASP 110 PRO 111 ASN 112 ASP 113 MET 114 SER 115 ARG 116 ILE 117 PHE 118 ASN 119 ILE 120 VAL 121 LYS 122 GLU 123 SER 124 LEU 125 LEU 126 ARG 127
Unit 2	MET 1 SER 2 PHE 3 THR 4 ASN 5 ALA 6 THR 7 PHE 8 SER 9 GLN 10 VAL 11 LEU 12 ASP 13 ASP 14 LEU 15 SER 16 ALA 17 ARG 18 PHE 19 ILE 20 LEU 21 ASN 22 LEU 23 PRO 24 ALA 25 GLU 26 GLU 27 GLN 28 SER 29 SER 30 VAL 31 GLU 32 ARG 33 LEU 34 CYS 35 PHE 36 GLN 37 ILE 38 GLU 39 GLN 40 ALA 41 HIS 42 TRP 43 PHE 44 TYR 45 GLU 46 ASP 47 PHE 48 ILE 49 ARG 50 ALA 51 GLN 52 ASN 53 ASP 54 GLN 55 LEU 56 PRO 57 SER 58 LEU 59 GLY 60 LEU 61 ARG 62 VAL 63 PHE 64 SER 65 ALA 66 LYS 67 LEU 68 PHE 69 ALA 70 HIS 71 CYS 72 PRO 73 LEU 74 LEU 75 TRP 76 LYS 77 TRP 78 SER 79 LYS 80 VAL 81 HIS 82 GLU 83 GLU 84 ALA 85 PHE 86 ASP 87 ASP 88 PHE 89 LEU 90 ARG 91 TYR 92 LYS 93 THR 94 ARG 95 ILE 96 PRO 97 VAL 98 ARG 99 GLY 100 ALA 101 ILE 102 MET 103 LEU 104 ASP 105 MET 106 SER 107 MET 108 GLN 109 GLN 110 CYS 111 VAL 112 LEU 113 VAL 114 LYS 115 GLY 116 TRP 117 LYS 118 ALA 119 SER 120 SER 121 GLY 122 TRP 123 GLY 124 PHE 125 PRO 126 LYS 127 GLY 128 LYS 129 ILE 130 ASP 131 LYS 132 ASP 133 GLU 134 SER 135 ASP 136 VAL 137 ASP 138 CYS 139 ALA 140 ILE 141 ARG 142 GLU 143 VAL 144 TYR 145 GLU 146 GLU 147 THR 148 GLY 149 PHE 150 ASP 151 CYS 152 SER 153 SER 154 ARG 155 ILE 156 ASN 157 PRO 158 ASN 159 GLU 160 PHE 161 ILE 162 ASP 163 MET 164 THR 165 ILE 166 ARG 167 GLY 168 GLN 169 ASN 170 VAL 171 ARG 172 LEU 173 TYR 174 ILE 175 ILE 176 PRO 177 GLY 178 ILE 179 SER 180 LEU 181 ASP 182 THR 183 ARG 184 PHE 185 GLU 186 SER 187 ARG 188 THR 189 ARG 190 LYS 191 GLU 192 ILE 193 SER 194 LYS 195 ILE 196 GLU 197 TRP 198 HIS 199 ASN 200 LEU 201 MET 202 ASP 203 LEU 204 PRO 205 THR 206 PHE 207 LYS 208 LYS 209 ASN 210 LYS 211 PRO 212 GLN 213 THR 214 MET 215 LYS 216 ASN 217 LYS 218 PHE 219 TYR 220 MET 221 VAL 222 ILE 223 PRO 224 PHE 225 LEU 226 ALA 227 PRO 228 LEU 229 LYS 230 LYS 231 TRP 232 ILE 233 LYS 234 LYS 235 ARG 236 ASN 237 ILE 238 ALA 239 ASN 240 ASN 241 THR 242 THR 243 LYS 244 GLU 245 LYS 246 ASN 247 ILE 248 SER 249 VAL 250 ASP 251 VAL 252 ASP 253 ALA 254 ASP 255 ALA 256 SER 257 SER 258 GLN 259 LEU 260 LEU 261 SER 262 LEU 263 LEU 264 LYS 265 SER 266
Unit 3	MET 1 GLU 2 ASP 3 GLU 4 ASN 5 ILE 6 LEU 7 ARG 8 ASN 9 ALA 10 VAL 11 ASN 12 LEU 13 GLN 14 VAL 15 LEU 16 LYS 17 PHE 18 HIS 19 TYR 20 PRO 21 GLU 22 ILE 23 GLU 24 SER 25 ILE 26 ILE 27 ASP 28 ILE 29 ALA 30 SER 31 HIS 32 VAL 33 ALA 34 VAL 35 TYR 36 GLN 37 PHE 38 ASP 39 VAL 40 GLY 41 SER 42 GLN 43 LYS 44 TRP 45 LEU 46 LYS 47 THR 48 SER 49 ILE 50 GLU 51 GLY 52 THR 53 PHE 54 PHE 55 LEU 56 VAL 57 LYS 58 ASP 59 GLN 60 ARG 61 ALA 62 ARG 63 VAL 64 GLY 65 TYR 66 VAL 67 ILE 68 LEU 69 ASN 70 ARG 71 ASN 72 SER 73 PRO 74 GLU 75 ASN 76 LEU 77 TYR 78 LEU 79 PHE 80 ILE 81 ASN 82 HIS 83 PRO 84 SER 85 ASN 86 VAL 87 HIS 88 LEU 89 VAL 90 ASP 91 ARG 92 TYR 93 LEU 94 ILE 95 HIS 96 ARG 97 THR 98 GLU 99 ASN 100 GLN 101 HIS 102 VAL 103 VAL 104 GLY 105 LEU 106 TRP 107 MET 108 PHE 109 ASP 110 PRO 111 ASN 112 ASP 113 MET 114 SER 115 ARG 116 ILE 117 PHE 118 ASN 119 ILE 120 VAL 121 LYS 122 GLU 123
Unit 4	MET 1 SER 2 PHE 3 THR 4 ASN 5 ALA 6 THR 7 PHE 8 SER 9 GLN 10 VAL 11 LEU 12 ASP 13 ASP 14 LEU 15 SER 16 ALA 17 ARG 18 PHE 19 ILE 20 LEU 21 ASN 22 LEU 23 PRO 24 ALA 25 GLU 26 GLU 27 GLN 28 SER 29 SER 30 VAL 31 GLU 32 ARG 33 LEU 34 CYS 35 PHE 36 GLN 37 ILE 38 GLU 39 GLN 40 ALA 41 HIS 42 TRP 43 PHE 44 TYR 45 GLU 46 ASP 47 PHE 48 ILE 49 ARG 50 ALA 51 GLN 52 ASN 53 ASP 54 GLN 55 LEU 56 PRO 57 SER 58 LEU 59 GLY 60 LEU 61 ARG 62 VAL 63 PHE 64 SER 65 ALA 66 LYS 67 LEU 68 PHE 69 ALA 70 HIS 71 CYS 72 TRP 76 LYS 77 TRP 78 SER 79 LYS 80 VAL 81 HIS 82 GLU 83 GLU 84 ALA 85 PHE 86 ASP 87 ASP 88 PHE 89 LEU 90 ARG 91 TYR 92 LYS 93 THR 94 ARG 95 ILE 96 PRO 97 VAL 98 ARG 99 GLY 100 ALA 101 ILE 102 MET 103 LEU 104 ASP 105 MET 106 SER 107 MET 108 GLN 109 GLN 110 CYS 111 VAL 112 LEU 113 VAL 114 TRP 123 GLY 124 PHE 125 PRO 126 LYS 127 GLY 128 LYS 129 ILE 130 ASP 131 LYS 132 ASP 133 GLU 134 SER 135 ASP 136 VAL 137 ASP 138 CYS 139 ALA 140 ILE 141 ARG 142 GLU 143 VAL 144 TYR 145 GLU 146 GLU 147 THR 148 GLY 149 PHE 150 ASP 151 CYS 152 SER 153 SER 154 ARG 155 ILE 156 ASN 157 PRO 158 ASN 159 GLU 160 PHE 161 ILE 162 ASP 163 MET 164 THR 165 ILE 166 ARG 167 GLY 168 GLN 169 ASN 170 VAL 171 ARG 172 LEU 173 TYR 174 ILE 175 ILE 176 PRO 177 GLY 178 ILE 179 SER 180 LEU 181 ASP 182 THR 183 ARG 184 PHE 185 GLU 186 SER 187 ARG 188 ILE 196 GLU 197 TRP 198 HIS 199 ASN 200 LEU 201 MET 202 ASP 203 LEU 204 PRO 205 THR 206 TYR 220 MET 221 VAL 222 ILE 223 PRO 224 PHE 225 LEU 226 ALA 227 PRO 228 LEU 229 LYS 230 LYS 231 TRP 232 ILE 233
Unit 5	MET 1 GLU 2 ASP 3 GLU 4 ASN 5 ILE 6 LEU 7 ARG 8 ASN 9 ALA 10 VAL 11 ASN 12 LEU 13 GLN 14 VAL 15 LEU 16 LYS 17 PHE 18 HIS 19 TYR 20 PRO 21 GLU 22 ILE 23 GLU 24 SER 25 ILE 26 ILE 27 ASP 28 ILE 29 ALA 30 SER 31 HIS 32 VAL 33 ALA 34 VAL 35 TYR 36 GLN 37 PHE 38 ASP 39 LYS 44 TRP 45 LEU 46 LYS 47 THR 48 SER 49 ILE 50 GLU 51 GLY 52 THR 53 PHE 54 PHE 55 LEU 56 VAL 57 LYS 58 ASP 59 GLN 60 ARG 61 ALA 62 ARG 63 VAL 64 GLY 65 TYR 66 VAL 67 ILE 68 LEU 69 ASN 70 ARG 71 ASN 72 SER 73 PRO 74 GLU 75 ASN 76 LEU 77 TYR 78 LEU 79 PHE 80 ILE 81 ASN 82 HIS 83 PRO 84 SER 85 ASN 86 VAL 87 HIS 88 LEU 89 VAL 90 ASP 91 ARG 92 TYR 93 LEU 94 ILE 95 HIS 96 ARG 97 THR 98 GLU 99 ASN 100 GLN 101 HIS 102 VAL 103 VAL 104 GLY 105 LEU 106 TRP 107 MET 108 PHE 109 ASP 110 PRO 111 ASN 112 ASP 113 MET 114 SER 115 ARG 116 ILE 117 PHE 118 ASN 119 ILE 120 VAL 121 LYS 122 GLU 123 SER 124 LEU 125 LEU 126 ARG 127
Unit 6	MET 1 SER 2 PHE 3 THR 4 ASN 5 ALA 6 THR 7 PHE 8 SER 9 GLN 10 VAL 11 LEU 12 ASP 13 ASP 14 LEU 15 SER 16 ALA 17 ARG 18 PHE 19 ILE 20 LEU 21 ASN 22 LEU 23 PRO 24 ALA 25 GLU 26 GLU 27 GLN 28 SER 29 SER 30 VAL 31 GLU 32 ARG 33 LEU 34 CYS 35 PHE 36 GLN 37 ILE 38 GLU 39 GLN 40 ALA 41 HIS 42 TRP 43 PHE 44 TYR 45 GLU 46 ASP 47 PHE 48 ILE 49 ARG 50 ALA 51 GLN 52 ASN 53 ASP 54 GLN 55 LEU 56 PRO 57 SER 58 LEU 59 GLY 60 LEU 61 ARG 62 VAL 63 PHE 64 SER 65 ALA 66 LYS 67 LEU 68 PHE 69 ALA 70 HIS 71 CYS 72 PRO 73 LEU 74 LEU 75 TRP 76 LYS 77 TRP 78 SER 79 LYS 80 VAL 81 HIS 82 GLU 83 GLU 84 ALA 85 PHE 86 ASP 87 ASP 88 PHE 89 LEU 90 ARG 91 TYR 92 LYS 93 THR 94 ARG 95 ILE 96 PRO 97 VAL 98 ARG 99 GLY 100 ALA 101 ILE 102 MET 103 LEU 104 ASP 105 MET 106 SER 107 MET 108 GLN 109 GLN 110 CYS 111 VAL 112 LEU 113 VAL 114 LYS 115 GLY 116 TRP 117 LYS 118 ALA 119 SER 120 SER 121 GLY 122 TRP 123 GLY 124 PHE 125 PRO 126 LYS 127 GLY 128 LYS 129 ILE 130 ASP 131 LYS 132 ASP 133 GLU 134 SER 135 ASP 136 VAL 137 ASP 138 CYS 139 ALA 140 ILE 141 ARG 142 GLU 143 VAL 144 TYR 145 GLU 146 GLU 147 THR 148 GLY 149 PHE 150 ASP 151 CYS 152 SER 153 SER 154 ARG 155 ILE 156 ASN 157 PRO 158 ASN 159 GLU 160 PHE 161 ILE 162 ASP 163 MET 164 THR 165 ILE 166 ARG 167 GLY 168 GLN 169 ASN 170 VAL 171 ARG 172 LEU 173 TYR 174 ILE 175 ILE 176 PRO 177 GLY 178 ILE 179 SER 180 LEU 181 ASP 182 THR 183 ARG 184 PHE 185 GLU 186 SER 187 ARG 188 THR 189 ARG 190 LYS 191 GLU 192 ILE 193 SER 194 LYS 195 ILE 196 GLU 197 TRP 198 HIS 199 ASN 200 LEU 201 MET 202 ASP 203 LEU 204 PRO 205 THR 206 PHE 207 LYS 208 LYS 209 ASN 210 MET 215 LYS 216 ASN 217 LYS 218 PHE 219 TYR 220 MET 221 VAL 222 ILE 223 PRO 224 PHE 225 LEU 226 ALA 227 PRO 228 LEU 229 LYS 230 LYS 231 TRP 232 ILE 233 LYS 234 LYS 235 ARG 236 ASN 237 ILE 238 ALA 239 ASN 240 ASN 241 THR 242 THR 243 LYS 244 GLU 245 LYS 246 ASN 247 ILE 248 SER 249 VAL 250 ASP 251 VAL 252 ASP 253 ALA 254 ASP 255 ALA 256 SER 257 SER 258 GLN 259 LEU 260 LEU 261 SER 262 LEU 263 LEU 264 LYS 265 SER 266
Unit 7	MET 1 GLU 2 ASP 3 GLU 4 ASN 5 ILE 6 LEU 7 ARG 8 ASN 9 ALA 10 VAL 11 ASN 12 LEU 13 GLN 14 VAL 15 LEU 16 LYS 17 PHE 18 HIS 19 TYR 20 PRO 21 GLU 22 ILE 23 GLU 24 SER 25 ILE 26 ILE 27 ASP 28 ILE 29 ALA 30 SER 31 HIS 32 VAL 33 ALA 34 VAL 35 TYR 36 GLN 37 PHE 38 ASP 39 VAL 40 GLY 41 SER 42 GLN 43 LYS 44 TRP 45 LEU 46 LYS 47 THR 48 SER 49 ILE 50 GLU 51 GLY 52 THR 53 PHE 54 PHE 55 LEU 56 VAL 57 LYS 58 ASP 59 GLN 60 ARG 61 ALA 62 ARG 63 VAL 64 GLY 65 TYR 66 VAL 67 ILE 68 LEU 69 ASN 70 ARG 71 ASN 72 SER 73 PRO 74 GLU 75 ASN 76 LEU 77 TYR 78 LEU 79 PHE 80 ILE 81 ASN 82 HIS 83 PRO 84 SER 85 ASN 86 VAL 87 HIS 88 LEU 89 VAL 90 ASP 91 ARG 92 TYR 93 LEU 94 ILE 95 HIS 96 ARG 97 THR 98 GLU 99 ASN 100 GLN 101 HIS 102 VAL 103 VAL 104 GLY 105 LEU 106 TRP 107 MET 108 PHE 109 ASP 110 PRO 111 ASN 112 ASP 113 MET 114 SER 115 ARG 116 ILE 117 PHE 118 ASN 119 ILE 120 VAL 121 LYS 122 GLU 123 SER 124 LEU 125 LEU 126 ARG 127
Unit 8	MET 1 SER 2 PHE 3 THR 4 ASN 5 ALA 6 THR 7 PHE 8 SER 9 GLN 10 VAL 11 LEU 12 ASP 13 ASP 14 LEU 15 SER 16 ALA 17 ARG 18 PHE 19 ILE 20 LEU 21 ASN 22 LEU 23 PRO 24 ALA 25 GLU 26 GLU 27 GLN 28 SER 29 SER 30 VAL 31 GLU 32 ARG 33 LEU 34 CYS 35 PHE 36 GLN 37 ILE 38 GLU 39 GLN 40 ALA 41 HIS 42 TRP 43 PHE 44 TYR 45 GLU 46 ASP 47 PHE 48 ILE 49 ARG 50 ALA 51 GLN 52 ASN 53 ASP 54 GLN 55 LEU 56 PRO 57 SER 58 LEU 59 GLY 60 LEU 61 ARG 62 VAL 63 PHE 64 SER 65 ALA 66 LYS 67 LEU 68 PHE 69 ALA 70 HIS 71 CYS 72 LYS 77 TRP 78 SER 79 LYS 80 VAL 81 HIS 82 GLU 83 GLU 84 ALA 85 PHE 86 ASP 87 ASP 88 PHE 89 LEU 90 ARG 91 TYR 92 LYS 93 THR 94 ARG 95 ILE 96 PRO 97 VAL 98 ARG 99 GLY 100 ALA 101 ILE 102 MET 103 LEU 104 ASP 105 MET 106 SER 107 MET 108 GLN 109 GLN 110 CYS 111 VAL 112 LEU 113 VAL 114 GLY 122 TRP 123 GLY 124 PHE 125 PRO 126 LYS 127 GLY 128 LYS 129 ILE 130 ASP 131 LYS 132 ASP 133 GLU 134 SER 135 ASP 136 VAL 137 ASP 138 CYS 139 ALA 140 ILE 141 ARG 142 GLU 143 VAL 144 TYR 145 GLU 146 GLU 147 THR 148 GLY 149 PHE 150 ASP 151 CYS 152 SER 153 SER 154 ARG 155 ILE 156 ASN 157 PRO 158 ASN 159 GLU 160 PHE 161 ILE 162 ASP 163 MET 164 THR 165 ILE 166 ARG 167 GLY 168 GLN 169 ASN 170 VAL 171 ARG 172 LEU 173 TYR 174 ILE 175 ILE 196 GLU 197 TRP 198 HIS 199 ASN 200 LEU 201 MET 202 ASP 203 LEU 204 PRO 205 THR 206 MET 221 VAL 222 ILE 223 PRO 224 PHE 225 LEU 226 ALA 227 PRO 228 LEU 229 LYS 230 LYS 231 TRP 232 ILE 233 LYS 234 LYS 235

Ligands

Unit 9	ATP 267
Unit 10	ATP 267