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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN RNASE H CATALYTIC DOMAIN MUTANT D210N IN COMPLEX WITH RNA/DNA HYBRID
Keywords RNASE H; RNA/DNA HYBRID, HYDROLASE-DNA-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2QK9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    B 18 377 0
2  Other macromolecule   5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*GP*C -3'  C 18 369 0
3  Protein   RIBONUCLEASE H1  A 153 1188 0
4  Ligand   5'-R(*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*U -3'  B 2 0 10
5  Ligand   5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*GP*C -3'  C 2 0 13
6  Ligand   RIBONUCLEASE H1  A 8 0 46
7 Water     109 0 109
total       310 1934 178
Proteins
Unit 3 SER134 HIS135 MET136 GLY137 ASP138 PHE139 VAL140 VAL141 VAL142 TYR143 THR144 ASP145 GLY146 CYS147 CYS148 SER149 SER150 ASN151 GLY152 ARG153 ARG154 ARG155 PRO156 ARG157 ALA158 GLY159 ILE160 GLY161 VAL162 TYR163 TRP164 GLY165 PRO166 GLY167 HIS168 PRO169 LEU170 ASN171 VAL172 GLY173 ILE174 ARG175 LEU176 PRO177 GLY178 ARG179 GLN180 THR181 ASN182 GLN183 ARG184 ALA185 GLU186 ILE187 HIS188 ALA189 ALA190 CYS191 LYS192 ALA193 ILE194 GLU195 GLN196 ALA197 LYS198 THR199 GLN200 ASN201 ILE202 ASN203 LYS204 LEU205 VAL206 LEU207 TYR208 THR209 ASN210 SER211 MET212 PHE213 THR214 ILE215 ASN216 GLY217 ILE218 THR219 ASN220 TRP221 VAL222 GLN223 GLY224 TRP225 LYS226 LYS227 ASN228 GLY229 TRP230 LYS231 THR232 SER233 ALA234 GLY235 LYS236 GLU237 VAL238 ILE239 ASN240 LYS241 GLU242 ASP243 PHE244 VAL245 ALA246 LEU247 GLU248 ARG249 LEU250 THR251 GLN252 GLY253 MET254 ASP255 ILE256 GLN257 TRP258 MET259 HIS260 VAL261 PRO262 GLY263 HIS264 SER265 GLY266 PHE267 ILE268 GLY269 ASN270 GLU271 GLU272 ALA273 ASP274 ARG275 LEU276 ALA277 ARG278 GLU279 GLY280 ALA281 LYS282 GLN283 SER284 GLU285 ASP286
Nucleic acids
Unit 1 A1 G2 U3 G4 C5 G6 A7 C8 A9 C10 C11 U12 G13 A14 U15 U16 C17 C18
Other macromolecules
Unit 2 DG19 DG20 DA21 DA22 DT23 DC24 DA25 DG26 DG27 DT28 DG29 DT30 DC31 DG32 DC33 DA34 DC35 DT36
Ligands
Unit 4 SO41007 SO41008
Unit 5 16D1004 SO41009
Unit 6 FLC1001 GOL1002 GOL1003 SO41005 SO41006 SO41010 SO41011 NA9001
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany