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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVESIAE MITOCHONDRIAL DEPENDENT ISOCITRATE DEHYDROGENASE IN COMPLEX WITH NADP(+)
Keywords ROSSMANN FOLD, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2QFV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ISOCITRATE DEHYDROGENASE [NADP]  A 410 3248 0
2  Protein   ISOCITRATE DEHYDROGENASE [NADP]  B 408 3231 0
3  Protein   ISOCITRATE DEHYDROGENASE [NADP]  C 408 3231 0
4  Protein   ISOCITRATE DEHYDROGENASE [NADP]  D 410 3248 0
5  Ligand   ISOCITRATE DEHYDROGENASE [NADP]  A 1 0 48
6  Ligand   ISOCITRATE DEHYDROGENASE [NADP]  B 1 0 48
7  Ligand   ISOCITRATE DEHYDROGENASE [NADP]  C 1 0 48
8  Ligand   ISOCITRATE DEHYDROGENASE [NADP]  D 1 0 48
9 Water     950 0 950
total       2590 12958 1142
Proteins
Unit 1 PHE2 SER3 LYS4 ILE5 LYS6 VAL7 LYS8 GLN9 PRO10 VAL11 VAL12 GLU13 LEU14 ASP15 GLY16 ASP17 GLU18 MET19 THR20 ARG21 ILE22 ILE23 TRP24 ASP25 LYS26 ILE27 LYS28 LYS29 LYS30 LEU31 ILE32 LEU33 PRO34 TYR35 LEU36 ASP37 VAL38 ASP39 LEU40 LYS41 TYR42 TYR43 ASP44 LEU45 SER46 VAL47 GLU48 SER49 ARG50 ASP51 ALA52 THR53 SER54 ASP55 LYS56 ILE57 THR58 GLN59 ASP60 ALA61 ALA62 GLU63 ALA64 ILE65 LYS66 LYS67 TYR68 GLY69 VAL70 GLY71 ILE72 LYS73 CYS74 ALA75 THR76 ILE77 THR78 PRO79 ASP80 GLU81 ALA82 ARG83 VAL84 LYS85 GLU86 PHE87 ASN88 LEU89 HIS90 LYS91 MET92 TRP93 LYS94 SER95 PRO96 ASN97 GLY98 THR99 ILE100 ARG101 ASN102 ILE103 LEU104 GLY105 GLY106 THR107 VAL108 PHE109 ARG110 GLU111 PRO112 ILE113 VAL114 ILE115 PRO116 ARG117 ILE118 PRO119 ARG120 LEU121 VAL122 PRO123 ARG124 TRP125 GLU126 LYS127 PRO128 ILE129 ILE130 ILE131 GLY132 ARG133 HIS134 ALA135 HIS136 GLY137 ASP138 GLN139 TYR140 LYS141 ALA142 THR143 ASP144 THR145 LEU146 ILE147 PRO148 GLY149 PRO150 GLY151 SER152 LEU153 GLU154 LEU155 VAL156 TYR157 LYS158 PRO159 SER160 ASP161 PRO162 THR163 THR164 ALA165 GLN166 PRO167 GLN168 THR169 LEU170 LYS171 VAL172 TYR173 ASP174 TYR175 LYS176 GLY177 SER178 GLY179 VAL180 ALA181 MET182 ALA183 MET184 TYR185 ASN186 THR187 ASP188 GLU189 SER190 ILE191 GLU192 GLY193 PHE194 ALA195 HIS196 SER197 SER198 PHE199 LYS200 LEU201 ALA202 ILE203 ASP204 LYS205 LYS206 LEU207 ASN208 LEU209 PHE210 LEU211 SER212 THR213 LYS214 ASN215 THR216 ILE217 LEU218 LYS219 LYS220 TYR221 ASP222 GLY223 ARG224 PHE225 LYS226 ASP227 ILE228 PHE229 GLN230 GLU231 VAL232 TYR233 GLU234 ALA235 GLN236 TYR237 LYS238 SER239 LYS240 PHE241 GLU242 GLN243 LEU244 GLY245 ILE246 HIS247 TYR248 GLU249 HIS250 ARG251 LEU252 ILE253 ASP254 ASP255 MET256 VAL257 ALA258 GLN259 MET260 ILE261 LYS262 SER263 LYS264 GLY265 GLY266 PHE267 ILE268 MET269 ALA270 LEU271 LYS272 ASN273 TYR274 ASP275 GLY276 ASP277 VAL278 GLN279 SER280 ASP281 ILE282 VAL283 ALA284 GLN285 GLY286 PHE287 GLY288 SER289 LEU290 GLY291 LEU292 MET293 THR294 SER295 ILE296 LEU297 VAL298 THR299 PRO300 ASP301 GLY302 LYS303 THR304 PHE305 GLU306 SER307 GLU308 ALA309 ALA310 HIS311 GLY312 THR313 VAL314 THR315 ARG316 HIS317 TYR318 ARG319 LYS320 TYR321 GLN322 LYS323 GLY324 GLU325 GLU326 THR327 SER328 THR329 ASN330 SER331 ILE332 ALA333 SER334 ILE335 PHE336 ALA337 TRP338 SER339 ARG340 GLY341 LEU342 LEU343 LYS344 ARG345 GLY346 GLU347 LEU348 ASP349 ASN350 THR351 PRO352 ALA353 LEU354 CYS355 LYS356 PHE357 ALA358 ASN359 ILE360 LEU361 GLU362 SER363 ALA364 THR365 LEU366 ASN367 THR368 VAL369 GLN370 GLN371 ASP372 GLY373 ILE374 MET375 THR376 LYS377 ASP378 LEU379 ALA380 LEU381 ALA382 CYS383 GLY384 ASN385 ASN386 GLU387 ARG388 SER389 ALA390 TYR391 VAL392 THR393 THR394 GLU395 GLU396 PHE397 LEU398 ASP399 ALA400 VAL401 GLU402 LYS403 ARG404 LEU405 GLN406 LYS407 GLU408 ILE409 LYS410 SER411
Unit 2 LYS4 ILE5 LYS6 VAL7 LYS8 GLN9 PRO10 VAL11 VAL12 GLU13 LEU14 ASP15 GLY16 ASP17 GLU18 MET19 THR20 ARG21 ILE22 ILE23 TRP24 ASP25 LYS26 ILE27 LYS28 LYS29 LYS30 LEU31 ILE32 LEU33 PRO34 TYR35 LEU36 ASP37 VAL38 ASP39 LEU40 LYS41 TYR42 TYR43 ASP44 LEU45 SER46 VAL47 GLU48 SER49 ARG50 ASP51 ALA52 THR53 SER54 ASP55 LYS56 ILE57 THR58 GLN59 ASP60 ALA61 ALA62 GLU63 ALA64 ILE65 LYS66 LYS67 TYR68 GLY69 VAL70 GLY71 ILE72 LYS73 CYS74 ALA75 THR76 ILE77 THR78 PRO79 ASP80 GLU81 ALA82 ARG83 VAL84 LYS85 GLU86 PHE87 ASN88 LEU89 HIS90 LYS91 MET92 TRP93 LYS94 SER95 PRO96 ASN97 GLY98 THR99 ILE100 ARG101 ASN102 ILE103 LEU104 GLY105 GLY106 THR107 VAL108 PHE109 ARG110 GLU111 PRO112 ILE113 VAL114 ILE115 PRO116 ARG117 ILE118 PRO119 ARG120 LEU121 VAL122 PRO123 ARG124 TRP125 GLU126 LYS127 PRO128 ILE129 ILE130 ILE131 GLY132 ARG133 HIS134 ALA135 HIS136 GLY137 ASP138 GLN139 TYR140 LYS141 ALA142 THR143 ASP144 THR145 LEU146 ILE147 PRO148 GLY149 PRO150 GLY151 SER152 LEU153 GLU154 LEU155 VAL156 TYR157 LYS158 PRO159 SER160 ASP161 PRO162 THR163 THR164 ALA165 GLN166 PRO167 GLN168 THR169 LEU170 LYS171 VAL172 TYR173 ASP174 TYR175 LYS176 GLY177 SER178 GLY179 VAL180 ALA181 MET182 ALA183 MET184 TYR185 ASN186 THR187 ASP188 GLU189 SER190 ILE191 GLU192 GLY193 PHE194 ALA195 HIS196 SER197 SER198 PHE199 LYS200 LEU201 ALA202 ILE203 ASP204 LYS205 LYS206 LEU207 ASN208 LEU209 PHE210 LEU211 SER212 THR213 LYS214 ASN215 THR216 ILE217 LEU218 LYS219 LYS220 TYR221 ASP222 GLY223 ARG224 PHE225 LYS226 ASP227 ILE228 PHE229 GLN230 GLU231 VAL232 TYR233 GLU234 ALA235 GLN236 TYR237 LYS238 SER239 LYS240 PHE241 GLU242 GLN243 LEU244 GLY245 ILE246 HIS247 TYR248 GLU249 HIS250 ARG251 LEU252 ILE253 ASP254 ASP255 MET256 VAL257 ALA258 GLN259 MET260 ILE261 LYS262 SER263 LYS264 GLY265 GLY266 PHE267 ILE268 MET269 ALA270 LEU271 LYS272 ASN273 TYR274 ASP275 GLY276 ASP277 VAL278 GLN279 SER280 ASP281 ILE282 VAL283 ALA284 GLN285 GLY286 PHE287 GLY288 SER289 LEU290 GLY291 LEU292 MET293 THR294 SER295 ILE296 LEU297 VAL298 THR299 PRO300 ASP301 GLY302 LYS303 THR304 PHE305 GLU306 SER307 GLU308 ALA309 ALA310 HIS311 GLY312 THR313 VAL314 THR315 ARG316 HIS317 TYR318 ARG319 LYS320 TYR321 GLN322 LYS323 GLY324 GLU325 GLU326 THR327 SER328 THR329 ASN330 SER331 ILE332 ALA333 SER334 ILE335 PHE336 ALA337 TRP338 SER339 ARG340 GLY341 LEU342 LEU343 LYS344 ARG345 GLY346 GLU347 LEU348 ASP349 ASN350 THR351 PRO352 ALA353 LEU354 CYS355 LYS356 PHE357 ALA358 ASN359 ILE360 LEU361 GLU362 SER363 ALA364 THR365 LEU366 ASN367 THR368 VAL369 GLN370 GLN371 ASP372 GLY373 ILE374 MET375 THR376 LYS377 ASP378 LEU379 ALA380 LEU381 ALA382 CYS383 GLY384 ASN385 ASN386 GLU387 ARG388 SER389 ALA390 TYR391 VAL392 THR393 THR394 GLU395 GLU396 PHE397 LEU398 ASP399 ALA400 VAL401 GLU402 LYS403 ARG404 LEU405 GLN406 LYS407 GLU408 ILE409 LYS410 SER411
Unit 3 SER3 LYS4 ILE5 LYS6 VAL7 LYS8 GLN9 PRO10 VAL11 VAL12 GLU13 LEU14 ASP15 GLY16 ASP17 GLU18 MET19 THR20 ARG21 ILE22 ILE23 TRP24 ASP25 LYS26 ILE27 LYS28 LYS29 LYS30 LEU31 ILE32 LEU33 PRO34 TYR35 LEU36 ASP37 VAL38 ASP39 LEU40 LYS41 TYR42 TYR43 ASP44 LEU45 SER46 VAL47 GLU48 SER49 ARG50 ASP51 ALA52 THR53 SER54 ASP55 LYS56 ILE57 THR58 GLN59 ASP60 ALA61 ALA62 GLU63 ALA64 ILE65 LYS66 LYS67 TYR68 GLY69 VAL70 GLY71 ILE72 LYS73 CYS74 ALA75 THR76 ILE77 THR78 PRO79 ASP80 GLU81 ALA82 ARG83 VAL84 LYS85 GLU86 PHE87 ASN88 LEU89 HIS90 LYS91 MET92 TRP93 LYS94 SER95 PRO96 ASN97 GLY98 THR99 ILE100 ARG101 ASN102 ILE103 LEU104 GLY105 GLY106 THR107 VAL108 PHE109 ARG110 GLU111 PRO112 ILE113 VAL114 ILE115 PRO116 ARG117 ILE118 PRO119 ARG120 LEU121 VAL122 PRO123 ARG124 TRP125 GLU126 LYS127 PRO128 ILE129 ILE130 ILE131 GLY132 ARG133 HIS134 ALA135 HIS136 GLY137 ASP138 GLN139 TYR140 LYS141 ALA142 THR143 ASP144 THR145 LEU146 ILE147 PRO148 GLY149 PRO150 GLY151 SER152 LEU153 GLU154 LEU155 VAL156 TYR157 LYS158 PRO159 SER160 ASP161 PRO162 THR163 THR164 ALA165 GLN166 PRO167 GLN168 THR169 LEU170 LYS171 VAL172 TYR173 ASP174 TYR175 LYS176 GLY177 SER178 GLY179 VAL180 ALA181 MET182 ALA183 MET184 TYR185 ASN186 THR187 ASP188 GLU189 SER190 ILE191 GLU192 GLY193 PHE194 ALA195 HIS196 SER197 SER198 PHE199 LYS200 LEU201 ALA202 ILE203 ASP204 LYS205 LYS206 LEU207 ASN208 LEU209 PHE210 LEU211 SER212 THR213 LYS214 ASN215 THR216 ILE217 LEU218 LYS219 LYS220 TYR221 ASP222 GLY223 ARG224 PHE225 LYS226 ASP227 ILE228 PHE229 GLN230 GLU231 VAL232 TYR233 GLU234 ALA235 GLN236 TYR237 LYS238 SER239 LYS240 PHE241 GLU242 GLN243 LEU244 GLY245 ILE246 HIS247 TYR248 GLU249 HIS250 ARG251 LEU252 ILE253 ASP254 ASP255 MET256 VAL257 ALA258 GLN259 MET260 ILE261 LYS262 SER263 LYS264 GLY265 GLY266 PHE267 ILE268 MET269 ALA270 LEU271 LYS272 ASN273 TYR274 ASP275 GLY276 ASP277 VAL278 GLN279 SER280 ASP281 ILE282 VAL283 ALA284 GLN285 GLY286 PHE287 GLY288 SER289 LEU290 GLY291 LEU292 MET293 THR294 SER295 ILE296 LEU297 VAL298 THR299 PRO300 ASP301 GLY302 LYS303 THR304 PHE305 GLU306 SER307 GLU308 ALA309 ALA310 HIS311 GLY312 THR313 VAL314 THR315 ARG316 HIS317 TYR318 ARG319 LYS320 TYR321 GLN322 LYS323 GLY324 GLU325 GLU326 THR327 SER328 THR329 ASN330 SER331 ILE332 ALA333 SER334 ILE335 PHE336 ALA337 TRP338 SER339 ARG340 GLY341 LEU342 LEU343 LYS344 ARG345 GLY346 GLU347 LEU348 ASP349 ASN350 THR351 PRO352 ALA353 LEU354 CYS355 LYS356 PHE357 ALA358 ASN359 ILE360 LEU361 GLU362 SER363 ALA364 THR365 LEU366 ASN367 THR368 VAL369 GLN370 GLN371 ASP372 GLY373 ILE374 MET375 THR376 LYS377 ASP378 LEU379 ALA380 LEU381 ALA382 CYS383 GLY384 ASN385 ASN386 GLU387 ARG388 SER389 ALA390 TYR391 VAL392 THR393 THR394 GLU395 GLU396 PHE397 LEU398 ASP399 ALA400 VAL401 GLU402 LYS403 ARG404 LEU405 GLN406 LYS407 GLU408 ILE409 LYS410
Unit 4 PHE2 SER3 LYS4 ILE5 LYS6 VAL7 LYS8 GLN9 PRO10 VAL11 VAL12 GLU13 LEU14 ASP15 GLY16 ASP17 GLU18 MET19 THR20 ARG21 ILE22 ILE23 TRP24 ASP25 LYS26 ILE27 LYS28 LYS29 LYS30 LEU31 ILE32 LEU33 PRO34 TYR35 LEU36 ASP37 VAL38 ASP39 LEU40 LYS41 TYR42 TYR43 ASP44 LEU45 SER46 VAL47 GLU48 SER49 ARG50 ASP51 ALA52 THR53 SER54 ASP55 LYS56 ILE57 THR58 GLN59 ASP60 ALA61 ALA62 GLU63 ALA64 ILE65 LYS66 LYS67 TYR68 GLY69 VAL70 GLY71 ILE72 LYS73 CYS74 ALA75 THR76 ILE77 THR78 PRO79 ASP80 GLU81 ALA82 ARG83 VAL84 LYS85 GLU86 PHE87 ASN88 LEU89 HIS90 LYS91 MET92 TRP93 LYS94 SER95 PRO96 ASN97 GLY98 THR99 ILE100 ARG101 ASN102 ILE103 LEU104 GLY105 GLY106 THR107 VAL108 PHE109 ARG110 GLU111 PRO112 ILE113 VAL114 ILE115 PRO116 ARG117 ILE118 PRO119 ARG120 LEU121 VAL122 PRO123 ARG124 TRP125 GLU126 LYS127 PRO128 ILE129 ILE130 ILE131 GLY132 ARG133 HIS134 ALA135 HIS136 GLY137 ASP138 GLN139 TYR140 LYS141 ALA142 THR143 ASP144 THR145 LEU146 ILE147 PRO148 GLY149 PRO150 GLY151 SER152 LEU153 GLU154 LEU155 VAL156 TYR157 LYS158 PRO159 SER160 ASP161 PRO162 THR163 THR164 ALA165 GLN166 PRO167 GLN168 THR169 LEU170 LYS171 VAL172 TYR173 ASP174 TYR175 LYS176 GLY177 SER178 GLY179 VAL180 ALA181 MET182 ALA183 MET184 TYR185 ASN186 THR187 ASP188 GLU189 SER190 ILE191 GLU192 GLY193 PHE194 ALA195 HIS196 SER197 SER198 PHE199 LYS200 LEU201 ALA202 ILE203 ASP204 LYS205 LYS206 LEU207 ASN208 LEU209 PHE210 LEU211 SER212 THR213 LYS214 ASN215 THR216 ILE217 LEU218 LYS219 LYS220 TYR221 ASP222 GLY223 ARG224 PHE225 LYS226 ASP227 ILE228 PHE229 GLN230 GLU231 VAL232 TYR233 GLU234 ALA235 GLN236 TYR237 LYS238 SER239 LYS240 PHE241 GLU242 GLN243 LEU244 GLY245 ILE246 HIS247 TYR248 GLU249 HIS250 ARG251 LEU252 ILE253 ASP254 ASP255 MET256 VAL257 ALA258 GLN259 MET260 ILE261 LYS262 SER263 LYS264 GLY265 GLY266 PHE267 ILE268 MET269 ALA270 LEU271 LYS272 ASN273 TYR274 ASP275 GLY276 ASP277 VAL278 GLN279 SER280 ASP281 ILE282 VAL283 ALA284 GLN285 GLY286 PHE287 GLY288 SER289 LEU290 GLY291 LEU292 MET293 THR294 SER295 ILE296 LEU297 VAL298 THR299 PRO300 ASP301 GLY302 LYS303 THR304 PHE305 GLU306 SER307 GLU308 ALA309 ALA310 HIS311 GLY312 THR313 VAL314 THR315 ARG316 HIS317 TYR318 ARG319 LYS320 TYR321 GLN322 LYS323 GLY324 GLU325 GLU326 THR327 SER328 THR329 ASN330 SER331 ILE332 ALA333 SER334 ILE335 PHE336 ALA337 TRP338 SER339 ARG340 GLY341 LEU342 LEU343 LYS344 ARG345 GLY346 GLU347 LEU348 ASP349 ASN350 THR351 PRO352 ALA353 LEU354 CYS355 LYS356 PHE357 ALA358 ASN359 ILE360 LEU361 GLU362 SER363 ALA364 THR365 LEU366 ASN367 THR368 VAL369 GLN370 GLN371 ASP372 GLY373 ILE374 MET375 THR376 LYS377 ASP378 LEU379 ALA380 LEU381 ALA382 CYS383 GLY384 ASN385 ASN386 GLU387 ARG388 SER389 ALA390 TYR391 VAL392 THR393 THR394 GLU395 GLU396 PHE397 LEU398 ASP399 ALA400 VAL401 GLU402 LYS403 ARG404 LEU405 GLN406 LYS407 GLU408 ILE409 LYS410 SER411
Ligands
Unit 5 NAP1001
Unit 6 NAP1002
Unit 7 NAP1003
Unit 8 NAP1004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany