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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE REGULATORY DOMAIN OF HUMAN RIG-I WITH BOUND HG
Keywords ZINC FINGER, ALTERNATIVE SPLICING, ANTIVIRAL DEFENSE, ATP- BINDING, HELICASE, HYDROLASE, IMMUNE RESPONSE, INNATE IMMUNITY, INTERFERON INDUCTION, NUCLEOTIDE-BINDING, POLYMORPHISM, RNA-BINDING, UBL CONJUGATION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2QFD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  A 121 998 0
2  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  B 121 998 0
3  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  C 121 998 0
4  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  D 121 998 0
5  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  E 121 998 0
6  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  F 121 998 0
7  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  G 121 998 0
8  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  H 121 998 0
9  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  I 121 998 0
10  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  J 121 998 0
11  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  A 1 0 1
12  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  B 1 0 1
13  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  C 1 0 1
14  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  D 1 0 1
15  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  E 1 0 1
16  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  F 1 0 1
17  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  G 1 0 1
18  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  H 1 0 1
19  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  I 1 0 1
20  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  J 1 0 1
21 Water     102 0 102
total       1322 9980 112
Proteins
Unit 1 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 2 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 3 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 4 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 5 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 6 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 7 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 8 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 9 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Unit 10 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921 GLU922 MET923
Ligands
Unit 11 HG1001
Unit 12 HG1002
Unit 13 HG1003
Unit 14 HG1004
Unit 15 HG1005
Unit 16 HG1006
Unit 17 HG1007
Unit 18 HG1008
Unit 19 HG1009
Unit 20 HG1010
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany