2Q8E - Sequence, Chains, Asymmetric and Biological Units

• Title: SPECIFICITY AND MECHANISM OF JMJD2A, A TRIMETHYLLYSINE-SPECI HISTONE DEMETHYLASE
• Keywords: HISTONE DEMETHYLASE, HYDROXYLASE, N-OXALYLGLYCINE, OXIDOREDU
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2Q8E	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	344	2787	0
2	Protein		B	337	2739	0
3	Protein	HISTONE 3 PEPTIDE	F	4	13	12
4	Protein	HISTONE 3 PEPTIDE	G	7	36	12
5	Ligand		A	3	0	12
6	Ligand		B	3	0	12
7	Water			290	0	290
total				988	5575	338

Proteins

Unit 1	SER 3 GLU 4 SER 5 GLU 6 THR 7 LEU 8 ASN 9 PRO 10 SER 11 ALA 12 ARG 13 ILE 14 MET 15 THR 16 PHE 17 TYR 18 PRO 19 THR 20 MET 21 GLU 22 GLU 23 PHE 24 ARG 25 ASN 26 PHE 27 SER 28 ARG 29 TYR 30 ILE 31 ALA 32 TYR 33 ILE 34 GLU 35 SER 36 GLN 37 GLY 38 ALA 39 HIS 40 ARG 41 ALA 42 GLY 43 LEU 44 ALA 45 LYS 46 VAL 47 VAL 48 PRO 49 PRO 50 LYS 51 GLU 52 TRP 53 LYS 54 PRO 55 ARG 56 ALA 57 SER 58 TYR 59 ASP 60 ASP 61 ILE 62 ASP 63 ASP 64 LEU 65 VAL 66 ILE 67 PRO 68 ALA 69 PRO 70 ILE 71 GLN 72 GLN 73 LEU 74 VAL 75 THR 76 GLY 77 GLN 78 SER 79 GLY 80 LEU 81 PHE 82 THR 83 GLN 84 TYR 85 ASN 86 ILE 87 GLN 88 LYS 89 LYS 90 ALA 91 MET 92 THR 93 VAL 94 ARG 95 GLU 96 PHE 97 ARG 98 LYS 99 ILE 100 ALA 101 ASN 102 SER 103 ASP 104 LYS 105 TYR 106 CYS 107 THR 108 PRO 109 ARG 110 TYR 111 SER 112 GLU 113 PHE 114 GLU 115 GLU 116 LEU 117 GLU 118 ARG 119 LYS 120 TYR 121 TRP 122 LYS 123 ASN 124 LEU 125 THR 126 PHE 127 ASN 128 PRO 129 PRO 130 ILE 131 TYR 132 GLY 133 ALA 134 ASP 135 VAL 136 ASN 137 GLY 138 THR 139 LEU 140 TYR 141 GLU 142 LYS 143 HIS 144 VAL 145 ASP 146 GLU 147 TRP 148 ASN 149 ILE 150 GLY 151 ARG 152 LEU 153 ARG 154 THR 155 ILE 156 LEU 157 ASP 158 LEU 159 VAL 160 GLU 161 LYS 162 GLU 163 SER 164 GLY 165 ILE 166 THR 167 ILE 168 GLU 169 GLY 170 VAL 171 ASN 172 THR 173 PRO 174 TYR 175 LEU 176 TYR 177 PHE 178 GLY 179 MET 180 TRP 181 LYS 182 THR 183 SER 184 PHE 185 ALA 186 TRP 187 HIS 188 THR 189 GLU 190 ASP 191 MET 192 ASP 193 LEU 194 TYR 195 SER 196 ILE 197 ASN 198 TYR 199 LEU 200 HIS 201 PHE 202 GLY 203 GLU 204 PRO 205 LYS 206 SER 207 TRP 208 TYR 209 SER 210 VAL 211 PRO 212 PRO 213 GLU 214 HIS 215 GLY 216 LYS 217 ARG 218 LEU 219 GLU 220 ARG 221 LEU 222 ALA 223 LYS 224 GLY 225 PHE 226 PHE 227 PRO 228 GLY 229 SER 230 ALA 231 GLN 232 SER 233 CYS 234 GLU 235 ALA 236 PHE 237 LEU 238 ARG 239 HIS 240 LYS 241 MET 242 THR 243 LEU 244 ILE 245 SER 246 PRO 247 LEU 248 MET 249 LEU 250 LYS 251 LYS 252 TYR 253 GLY 254 ILE 255 PRO 256 PHE 257 ASP 258 LYS 259 VAL 260 THR 261 GLN 262 GLU 263 ALA 264 GLY 265 GLU 266 PHE 267 MET 268 ILE 269 THR 270 PHE 271 PRO 272 TYR 273 GLY 274 TYR 275 HIS 276 ALA 277 GLY 278 PHE 279 ASN 280 HIS 281 GLY 282 PHE 283 ASN 284 CYS 285 ALA 286 GLU 287 SER 288 THR 289 ASN 290 PHE 291 ALA 292 THR 293 ARG 294 ARG 295 TRP 296 ILE 297 GLU 298 TYR 299 GLY 300 LYS 301 GLN 302 ALA 303 VAL 304 LEU 305 CYS 306 SER 307 CYS 308 ARG 309 LYS 310 ASP 311 MET 312 VAL 313 LYS 314 ILE 315 SER 316 MET 317 ASP 318 VAL 319 PHE 320 VAL 321 ARG 322 LYS 323 PHE 324 GLN 325 PRO 326 GLU 327 ARG 328 TYR 329 LYS 330 LEU 331 TRP 332 LYS 333 ALA 334 GLY 335 LYS 336 ASP 337 ASN 338 THR 339 VAL 340 ILE 341 ASP 342 HIS 343 THR 344 LEU 345 PRO 346
Unit 2	ASN 9 PRO 10 SER 11 ALA 12 ARG 13 ILE 14 MET 15 THR 16 PHE 17 TYR 18 PRO 19 THR 20 MET 21 GLU 22 GLU 23 PHE 24 ARG 25 ASN 26 PHE 27 SER 28 ARG 29 TYR 30 ILE 31 ALA 32 TYR 33 ILE 34 GLU 35 SER 36 GLN 37 GLY 38 ALA 39 HIS 40 ARG 41 ALA 42 GLY 43 LEU 44 ALA 45 LYS 46 VAL 47 VAL 48 PRO 49 PRO 50 LYS 51 GLU 52 TRP 53 LYS 54 PRO 55 ARG 56 ALA 57 SER 58 TYR 59 ASP 60 ASP 61 ILE 62 ASP 63 ASP 64 LEU 65 VAL 66 ILE 67 PRO 68 ALA 69 PRO 70 ILE 71 GLN 72 GLN 73 LEU 74 VAL 75 THR 76 GLY 77 GLN 78 SER 79 GLY 80 LEU 81 PHE 82 THR 83 GLN 84 TYR 85 ASN 86 ILE 87 GLN 88 LYS 89 LYS 90 ALA 91 MET 92 THR 93 VAL 94 ARG 95 GLU 96 PHE 97 ARG 98 LYS 99 ILE 100 ALA 101 ASN 102 SER 103 ASP 104 LYS 105 TYR 106 CYS 107 THR 108 PRO 109 ARG 110 TYR 111 SER 112 GLU 113 PHE 114 GLU 115 GLU 116 LEU 117 GLU 118 ARG 119 LYS 120 TYR 121 TRP 122 LYS 123 ASN 124 LEU 125 THR 126 PHE 127 ASN 128 PRO 129 PRO 130 ILE 131 TYR 132 GLY 133 ALA 134 ASP 135 VAL 136 ASN 137 GLY 138 THR 139 LEU 140 TYR 141 GLU 142 LYS 143 HIS 144 VAL 145 ASP 146 GLU 147 TRP 148 ASN 149 ILE 150 GLY 151 ARG 152 LEU 153 ARG 154 THR 155 ILE 156 LEU 157 ASP 158 LEU 159 VAL 160 GLU 161 LYS 162 GLU 163 SER 164 GLY 165 ILE 166 THR 167 ILE 168 GLU 169 GLY 170 VAL 171 ASN 172 THR 173 PRO 174 TYR 175 LEU 176 TYR 177 PHE 178 GLY 179 MET 180 TRP 181 LYS 182 THR 183 SER 184 PHE 185 ALA 186 TRP 187 HIS 188 THR 189 GLU 190 ASP 191 MET 192 ASP 193 LEU 194 TYR 195 SER 196 ILE 197 ASN 198 TYR 199 LEU 200 HIS 201 PHE 202 GLY 203 GLU 204 PRO 205 LYS 206 SER 207 TRP 208 TYR 209 SER 210 VAL 211 PRO 212 PRO 213 GLU 214 HIS 215 GLY 216 LYS 217 ARG 218 LEU 219 GLU 220 ARG 221 LEU 222 ALA 223 LYS 224 GLY 225 PHE 226 PHE 227 PRO 228 GLY 229 SER 230 ALA 231 GLN 232 SER 233 CYS 234 GLU 235 ALA 236 PHE 237 LEU 238 ARG 239 HIS 240 LYS 241 MET 242 THR 243 LEU 244 ILE 245 SER 246 PRO 247 LEU 248 MET 249 LEU 250 LYS 251 LYS 252 TYR 253 GLY 254 ILE 255 PRO 256 PHE 257 ASP 258 LYS 259 VAL 260 THR 261 GLN 262 GLU 263 ALA 264 GLY 265 GLU 266 PHE 267 MET 268 ILE 269 THR 270 PHE 271 PRO 272 TYR 273 GLY 274 TYR 275 HIS 276 ALA 277 GLY 278 PHE 279 ASN 280 HIS 281 GLY 282 PHE 283 ASN 284 CYS 285 ALA 286 GLU 287 SER 288 THR 289 ASN 290 PHE 291 ALA 292 THR 293 ARG 294 ARG 295 TRP 296 ILE 297 GLU 298 TYR 299 GLY 300 LYS 301 GLN 302 ALA 303 VAL 304 LEU 305 CYS 306 SER 307 CYS 308 ARG 309 LYS 310 ASP 311 MET 312 VAL 313 LYS 314 ILE 315 SER 316 MET 317 ASP 318 VAL 319 PHE 320 VAL 321 ARG 322 LYS 323 PHE 324 GLN 325 PRO 326 GLU 327 ARG 328 TYR 329 LYS 330 LEU 331 TRP 332 LYS 333 ALA 334 GLY 335 LYS 336 ASP 337 ASN 338 THR 339 VAL 340 ILE 341 ASP 342 HIS 343 THR 344 LEU 345
Unit 3	GLY 33 GLY 34 VAL 35 M3L 36
Unit 4	GLY 33 GLY 34 VAL 35 M3L 36 LYS 37 PRO 38 HIS 39

Ligands

Unit 5	NI 501 OGA 503 ZN 505
Unit 6	NI 502 OGA 504 ZN 506