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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN GERANYLGERANYL PYROPHOSPHATE SYNT TO GGPP
Keywords ISOPRENOID PATHWAY, ISOPENTENYL TRANSFERASE, STRUCTURAL GENO STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2Q80     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  A 285 2315 0
2  Protein   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  B 284 2292 0
3  Protein   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  C 284 2271 0
4  Protein   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  D 285 2314 0
5  Protein   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  E 284 2273 0
6  Protein   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  F 284 2248 0
7  Ligand   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  A 3 0 31
8  Ligand   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  B 3 0 31
9  Ligand   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  C 3 0 31
10  Ligand   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  D 3 0 31
11  Ligand   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  E 3 0 31
12  Ligand   GERANYLGERANYL PYROPHOSPHATE SYNTHETASE  F 3 0 21
13 Water     24 0 24
total       1748 13713 200
Proteins
Unit 1 GLU6 THR7 VAL8 GLN9 ARG10 ILE11 LEU12 LEU13 GLU14 PRO15 TYR16 LYS17 TYR18 LEU19 LEU20 GLN21 LEU22 PRO23 GLY24 LYS25 GLN26 VAL27 ARG28 THR29 LYS30 LEU31 SER32 GLN33 ALA34 PHE35 ASN36 HIS37 TRP38 LEU39 LYS40 VAL41 PRO42 GLU43 ASP44 LYS45 LEU46 GLN47 ILE48 ILE49 ILE50 GLU51 VAL52 THR53 GLU54 MET55 LEU56 HIS57 ASN58 ALA59 SER60 LEU61 LEU62 ILE63 ASP64 ASP65 ILE66 GLU67 ASP68 ASN69 SER70 LYS71 LEU72 ARG73 ARG74 GLY75 PHE76 PRO77 VAL78 ALA79 HIS80 SER81 ILE82 TYR83 GLY84 ILE85 PRO86 SER87 VAL88 ILE89 ASN90 SER91 ALA92 ASN93 TYR94 VAL95 TYR96 PHE97 LEU98 GLY99 LEU100 GLU101 LYS102 VAL103 LEU104 THR105 LEU106 ASP107 HIS108 PRO109 ASP110 ALA111 VAL112 LYS113 LEU114 PHE115 THR116 ARG117 GLN118 LEU119 LEU120 GLU121 LEU122 HIS123 GLN124 GLY125 GLN126 GLY127 LEU128 ASP129 ILE130 TYR131 TRP132 ARG133 ASP134 ASN135 TYR136 THR137 CYS138 PRO139 THR140 GLU141 GLU142 GLU143 TYR144 LYS145 ALA146 MET147 VAL148 LEU149 GLN150 LYS151 THR152 GLY153 GLY154 LEU155 PHE156 GLY157 LEU158 ALA159 VAL160 GLY161 LEU162 MET163 GLN164 LEU165 PHE166 SER167 ASP168 TYR169 LYS170 GLU171 ASP172 LEU173 LYS174 PRO175 LEU176 LEU177 ASN178 THR179 LEU180 GLY181 LEU182 PHE183 PHE184 GLN185 ILE186 ARG187 ASP188 ASP189 TYR190 ALA191 ASN192 LEU193 HIS194 SER195 LYS202 SER203 PHE204 CYS205 GLU206 ASP207 LEU208 THR209 GLU210 GLY211 LYS212 PHE213 SER214 PHE215 PRO216 THR217 ILE218 HIS219 ALA220 ILE221 TRP222 SER223 ARG224 PRO225 GLU226 SER227 THR228 GLN229 VAL230 GLN231 ASN232 ILE233 LEU234 ARG235 GLN236 ARG237 THR238 GLU239 ASN240 ILE241 ASP242 ILE243 LYS244 LYS245 TYR246 CYS247 VAL248 HIS249 TYR250 LEU251 GLU252 ASP253 VAL254 GLY255 SER256 PHE257 GLU258 TYR259 THR260 ARG261 ASN262 THR263 LEU264 LYS265 GLU266 LEU267 GLU268 ALA269 LYS270 ALA271 TYR272 LYS273 GLN274 ILE275 ASP276 ALA277 ARG278 GLY279 GLY280 ASN281 PRO282 GLU283 LEU284 VAL285 ALA286 LEU287 VAL288 LYS289 HIS290 LEU291 SER292 LYS293 MET294 PHE295 LYS296
Unit 2 GLU6 THR7 VAL8 GLN9 ARG10 ILE11 LEU12 LEU13 GLU14 PRO15 TYR16 LYS17 TYR18 LEU19 LEU20 GLN21 LEU22 PRO23 GLY24 LYS25 GLN26 VAL27 ARG28 THR29 LYS30 LEU31 SER32 GLN33 ALA34 PHE35 ASN36 HIS37 TRP38 LEU39 LYS40 VAL41 PRO42 GLU43 ASP44 LYS45 LEU46 GLN47 ILE48 ILE49 ILE50 GLU51 VAL52 THR53 GLU54 MET55 LEU56 HIS57 ASN58 ALA59 SER60 LEU61 LEU62 ILE63 ASP64 ASP65 ILE66 GLU67 ASP68 ASN69 SER70 LYS71 LEU72 ARG73 ARG74 GLY75 PHE76 PRO77 VAL78 ALA79 HIS80 SER81 ILE82 TYR83 GLY84 ILE85 PRO86 SER87 VAL88 ILE89 ASN90 SER91 ALA92 ASN93 TYR94 VAL95 TYR96 PHE97 LEU98 GLY99 LEU100 GLU101 LYS102 VAL103 LEU104 THR105 LEU106 ASP107 HIS108 PRO109 ASP110 ALA111 VAL112 LYS113 LEU114 PHE115 THR116 ARG117 GLN118 LEU119 LEU120 GLU121 LEU122 HIS123 GLN124 GLY125 GLN126 GLY127 LEU128 ASP129 ILE130 TYR131 TRP132 ARG133 ASP134 ASN135 TYR136 THR137 CYS138 PRO139 THR140 GLU141 GLU142 GLU143 TYR144 LYS145 ALA146 MET147 VAL148 LEU149 GLN150 LYS151 THR152 GLY153 GLY154 LEU155 PHE156 GLY157 LEU158 ALA159 VAL160 GLY161 LEU162 MET163 GLN164 LEU165 PHE166 SER167 ASP168 TYR169 LYS170 GLU171 ASP172 LEU173 LYS174 PRO175 LEU176 LEU177 ASN178 THR179 LEU180 GLY181 LEU182 PHE183 PHE184 GLN185 ILE186 ARG187 ASP188 ASP189 TYR190 ALA191 ASN192 LEU193 HIS194 SER195 LYS202 SER203 PHE204 CYS205 GLU206 ASP207 LEU208 THR209 GLU210 GLY211 LYS212 PHE213 SER214 PHE215 PRO216 THR217 ILE218 HIS219 ALA220 ILE221 TRP222 SER223 ARG224 PRO225 GLU226 SER227 THR228 GLN229 VAL230 GLN231 ASN232 ILE233 LEU234 ARG235 GLN236 ARG237 THR238 GLU239 ASN240 ILE241 ASP242 ILE243 LYS244 LYS245 TYR246 CYS247 VAL248 HIS249 TYR250 LEU251 GLU252 ASP253 VAL254 GLY255 SER256 PHE257 GLU258 TYR259 THR260 ARG261 ASN262 THR263 LEU264 LYS265 GLU266 LEU267 GLU268 ALA269 LYS270 ALA271 TYR272 LYS273 GLN274 ILE275 ASP276 ALA277 ARG278 GLY279 GLY280 ASN281 PRO282 GLU283 LEU284 VAL285 ALA286 LEU287 VAL288 LYS289 HIS290 LEU291 SER292 LYS293 MET294 PHE295
Unit 3 GLU6 THR7 VAL8 GLN9 ARG10 ILE11 LEU12 LEU13 GLU14 PRO15 TYR16 LYS17 TYR18 LEU19 LEU20 GLN21 LEU22 PRO23 GLY24 LYS25 GLN26 VAL27 ARG28 THR29 LYS30 LEU31 SER32 GLN33 ALA34 PHE35 ASN36 HIS37 TRP38 LEU39 LYS40 VAL41 PRO42 GLU43 ASP44 LYS45 LEU46 GLN47 ILE48 ILE49 ILE50 GLU51 VAL52 THR53 GLU54 MET55 LEU56 HIS57 ASN58 ALA59 SER60 LEU61 LEU62 ILE63 ASP64 ASP65 ILE66 GLU67 ASP68 ASN69 SER70 LYS71 LEU72 ARG73 ARG74 GLY75 PHE76 PRO77 VAL78 ALA79 HIS80 SER81 ILE82 TYR83 GLY84 ILE85 PRO86 SER87 VAL88 ILE89 ASN90 SER91 ALA92 ASN93 TYR94 VAL95 TYR96 PHE97 LEU98 GLY99 LEU100 GLU101 LYS102 VAL103 LEU104 THR105 LEU106 ASP107 HIS108 PRO109 ASP110 ALA111 VAL112 LYS113 LEU114 PHE115 THR116 ARG117 GLN118 LEU119 LEU120 GLU121 LEU122 HIS123 GLN124 GLY125 GLN126 GLY127 LEU128 ASP129 ILE130 TYR131 TRP132 ARG133 ASP134 ASN135 TYR136 THR137 CYS138 PRO139 THR140 GLU141 GLU142 GLU143 TYR144 LYS145 ALA146 MET147 VAL148 LEU149 GLN150 LYS151 THR152 GLY153 GLY154 LEU155 PHE156 GLY157 LEU158 ALA159 VAL160 GLY161 LEU162 MET163 GLN164 LEU165 PHE166 SER167 ASP168 TYR169 LYS170 GLU171 ASP172 LEU173 LYS174 PRO175 LEU176 LEU177 ASN178 THR179 LEU180 GLY181 LEU182 PHE183 PHE184 GLN185 ILE186 ARG187 ASP188 ASP189 TYR190 ALA191 ASN192 LEU193 HIS194 SER195 LYS202 SER203 PHE204 CYS205 GLU206 ASP207 LEU208 THR209 GLU210 GLY211 LYS212 PHE213 SER214 PHE215 PRO216 THR217 ILE218 HIS219 ALA220 ILE221 TRP222 SER223 ARG224 PRO225 GLU226 SER227 THR228 GLN229 VAL230 GLN231 ASN232 ILE233 LEU234 ARG235 GLN236 ARG237 THR238 GLU239 ASN240 ILE241 ASP242 ILE243 LYS244 LYS245 TYR246 CYS247 VAL248 HIS249 TYR250 LEU251 GLU252 ASP253 VAL254 GLY255 SER256 PHE257 GLU258 TYR259 THR260 ARG261 ASN262 THR263 LEU264 LYS265 GLU266 LEU267 GLU268 ALA269 LYS270 ALA271 TYR272 LYS273 GLN274 ILE275 ASP276 ALA277 ARG278 GLY279 GLY280 ASN281 PRO282 GLU283 LEU284 VAL285 ALA286 LEU287 VAL288 LYS289 HIS290 LEU291 SER292 LYS293 MET294 PHE295
Unit 4 GLU6 THR7 VAL8 GLN9 ARG10 ILE11 LEU12 LEU13 GLU14 PRO15 TYR16 LYS17 TYR18 LEU19 LEU20 GLN21 LEU22 PRO23 GLY24 LYS25 GLN26 VAL27 ARG28 THR29 LYS30 LEU31 SER32 GLN33 ALA34 PHE35 ASN36 HIS37 TRP38 LEU39 LYS40 VAL41 PRO42 GLU43 ASP44 LYS45 LEU46 GLN47 ILE48 ILE49 ILE50 GLU51 VAL52 THR53 GLU54 MET55 LEU56 HIS57 ASN58 ALA59 SER60 LEU61 LEU62 ILE63 ASP64 ASP65 ILE66 GLU67 ASP68 ASN69 SER70 LYS71 LEU72 ARG73 ARG74 GLY75 PHE76 PRO77 VAL78 ALA79 HIS80 SER81 ILE82 TYR83 GLY84 ILE85 PRO86 SER87 VAL88 ILE89 ASN90 SER91 ALA92 ASN93 TYR94 VAL95 TYR96 PHE97 LEU98 GLY99 LEU100 GLU101 LYS102 VAL103 LEU104 THR105 LEU106 ASP107 HIS108 PRO109 ASP110 ALA111 VAL112 LYS113 LEU114 PHE115 THR116 ARG117 GLN118 LEU119 LEU120 GLU121 LEU122 HIS123 GLN124 GLY125 GLN126 GLY127 LEU128 ASP129 ILE130 TYR131 TRP132 ARG133 ASP134 ASN135 TYR136 THR137 CYS138 PRO139 THR140 GLU141 GLU142 GLU143 TYR144 LYS145 ALA146 MET147 VAL148 LEU149 GLN150 LYS151 THR152 GLY153 GLY154 LEU155 PHE156 GLY157 LEU158 ALA159 VAL160 GLY161 LEU162 MET163 GLN164 LEU165 PHE166 SER167 ASP168 TYR169 LYS170 GLU171 ASP172 LEU173 LYS174 PRO175 LEU176 LEU177 ASN178 THR179 LEU180 GLY181 LEU182 PHE183 PHE184 GLN185 ILE186 ARG187 ASP188 ASP189 TYR190 ALA191 ASN192 LEU193 HIS194 SER195 ASN201 LYS202 SER203 PHE204 CYS205 GLU206 ASP207 LEU208 THR209 GLU210 GLY211 LYS212 PHE213 SER214 PHE215 PRO216 THR217 ILE218 HIS219 ALA220 ILE221 TRP222 SER223 ARG224 PRO225 GLU226 SER227 THR228 GLN229 VAL230 GLN231 ASN232 ILE233 LEU234 ARG235 GLN236 ARG237 THR238 GLU239 ASN240 ILE241 ASP242 ILE243 LYS244 LYS245 TYR246 CYS247 VAL248 HIS249 TYR250 LEU251 GLU252 ASP253 VAL254 GLY255 SER256 PHE257 GLU258 TYR259 THR260 ARG261 ASN262 THR263 LEU264 LYS265 GLU266 LEU267 GLU268 ALA269 LYS270 ALA271 TYR272 LYS273 GLN274 ILE275 ASP276 ALA277 ARG278 GLY279 GLY280 ASN281 PRO282 GLU283 LEU284 VAL285 ALA286 LEU287 VAL288 LYS289 HIS290 LEU291 SER292 LYS293 MET294 PHE295
Unit 5 GLU6 THR7 VAL8 GLN9 ARG10 ILE11 LEU12 LEU13 GLU14 PRO15 TYR16 LYS17 TYR18 LEU19 LEU20 GLN21 LEU22 PRO23 GLY24 LYS25 GLN26 VAL27 ARG28 THR29 LYS30 LEU31 SER32 GLN33 ALA34 PHE35 ASN36 HIS37 TRP38 LEU39 LYS40 VAL41 PRO42 GLU43 ASP44 LYS45 LEU46 GLN47 ILE48 ILE49 ILE50 GLU51 VAL52 THR53 GLU54 MET55 LEU56 HIS57 ASN58 ALA59 SER60 LEU61 LEU62 ILE63 ASP64 ASP65 ILE66 GLU67 ASP68 ASN69 SER70 LYS71 LEU72 ARG73 ARG74 GLY75 PHE76 PRO77 VAL78 ALA79 HIS80 SER81 ILE82 TYR83 GLY84 ILE85 PRO86 SER87 VAL88 ILE89 ASN90 SER91 ALA92 ASN93 TYR94 VAL95 TYR96 PHE97 LEU98 GLY99 LEU100 GLU101 LYS102 VAL103 LEU104 THR105 LEU106 ASP107 HIS108 PRO109 ASP110 ALA111 VAL112 LYS113 LEU114 PHE115 THR116 ARG117 GLN118 LEU119 LEU120 GLU121 LEU122 HIS123 GLN124 GLY125 GLN126 GLY127 LEU128 ASP129 ILE130 TYR131 TRP132 ARG133 ASP134 ASN135 TYR136 THR137 CYS138 PRO139 THR140 GLU141 GLU142 GLU143 TYR144 LYS145 ALA146 MET147 VAL148 LEU149 GLN150 LYS151 THR152 GLY153 GLY154 LEU155 PHE156 GLY157 LEU158 ALA159 VAL160 GLY161 LEU162 MET163 GLN164 LEU165 PHE166 SER167 ASP168 TYR169 LYS170 GLU171 ASP172 LEU173 LYS174 PRO175 LEU176 LEU177 ASN178 THR179 LEU180 GLY181 LEU182 PHE183 PHE184 GLN185 ILE186 ARG187 ASP188 ASP189 TYR190 ALA191 ASN192 LEU193 HIS194 SER195 LYS202 SER203 PHE204 CYS205 GLU206 ASP207 LEU208 THR209 GLU210 GLY211 LYS212 PHE213 SER214 PHE215 PRO216 THR217 ILE218 HIS219 ALA220 ILE221 TRP222 SER223 ARG224 PRO225 GLU226 SER227 THR228 GLN229 VAL230 GLN231 ASN232 ILE233 LEU234 ARG235 GLN236 ARG237 THR238 GLU239 ASN240 ILE241 ASP242 ILE243 LYS244 LYS245 TYR246 CYS247 VAL248 HIS249 TYR250 LEU251 GLU252 ASP253 VAL254 GLY255 SER256 PHE257 GLU258 TYR259 THR260 ARG261 ASN262 THR263 LEU264 LYS265 GLU266 LEU267 GLU268 ALA269 LYS270 ALA271 TYR272 LYS273 GLN274 ILE275 ASP276 ALA277 ARG278 GLY279 GLY280 ASN281 PRO282 GLU283 LEU284 VAL285 ALA286 LEU287 VAL288 LYS289 HIS290 LEU291 SER292 LYS293 MET294 PHE295
Unit 6 GLU6 THR7 VAL8 GLN9 ARG10 ILE11 LEU12 LEU13 GLU14 PRO15 TYR16 LYS17 TYR18 LEU19 LEU20 GLN21 LEU22 PRO23 GLY24 LYS25 GLN26 VAL27 ARG28 THR29 LYS30 LEU31 SER32 GLN33 ALA34 PHE35 ASN36 HIS37 TRP38 LEU39 LYS40 VAL41 PRO42 GLU43 ASP44 LYS45 LEU46 GLN47 ILE48 ILE49 ILE50 GLU51 VAL52 THR53 GLU54 MET55 LEU56 HIS57 ASN58 ALA59 SER60 LEU61 LEU62 ILE63 ASP64 ASP65 ILE66 GLU67 ASP68 ASN69 SER70 LYS71 LEU72 ARG73 ARG74 GLY75 PHE76 PRO77 VAL78 ALA79 HIS80 SER81 ILE82 TYR83 GLY84 ILE85 PRO86 SER87 VAL88 ILE89 ASN90 SER91 ALA92 ASN93 TYR94 VAL95 TYR96 PHE97 LEU98 GLY99 LEU100 GLU101 LYS102 VAL103 LEU104 THR105 LEU106 ASP107 HIS108 PRO109 ASP110 ALA111 VAL112 LYS113 LEU114 PHE115 THR116 ARG117 GLN118 LEU119 LEU120 GLU121 LEU122 HIS123 GLN124 GLY125 GLN126 GLY127 LEU128 ASP129 ILE130 TYR131 TRP132 ARG133 ASP134 ASN135 TYR136 THR137 CYS138 PRO139 THR140 GLU141 GLU142 GLU143 TYR144 LYS145 ALA146 MET147 VAL148 LEU149 GLN150 LYS151 THR152 GLY153 GLY154 LEU155 PHE156 GLY157 LEU158 ALA159 VAL160 GLY161 LEU162 MET163 GLN164 LEU165 PHE166 SER167 ASP168 TYR169 LYS170 GLU171 ASP172 LEU173 LYS174 PRO175 LEU176 LEU177 ASN178 THR179 LEU180 GLY181 LEU182 PHE183 PHE184 GLN185 ILE186 ARG187 ASP188 ASP189 TYR190 ALA191 ASN192 LEU193 HIS194 SER195 LYS202 SER203 PHE204 CYS205 GLU206 ASP207 LEU208 THR209 GLU210 GLY211 LYS212 PHE213 SER214 PHE215 PRO216 THR217 ILE218 HIS219 ALA220 ILE221 TRP222 SER223 ARG224 PRO225 GLU226 SER227 THR228 GLN229 VAL230 GLN231 ASN232 ILE233 LEU234 ARG235 GLN236 ARG237 THR238 GLU239 ASN240 ILE241 ASP242 ILE243 LYS244 LYS245 TYR246 CYS247 VAL248 HIS249 TYR250 LEU251 GLU252 ASP253 VAL254 GLY255 SER256 PHE257 GLU258 TYR259 THR260 ARG261 ASN262 THR263 LEU264 LYS265 GLU266 LEU267 GLU268 ALA269 LYS270 ALA271 TYR272 LYS273 GLN274 ILE275 ASP276 ALA277 ARG278 GLY279 GLY280 ASN281 PRO282 GLU283 LEU284 VAL285 ALA286 LEU287 VAL288 LYS289 HIS290 LEU291 SER292 LYS293 MET294 PHE295
Ligands
Unit 7 MG400 MG401 GRG500
Unit 8 MG400 MG401 GRG500
Unit 9 MG400 MG401 GRG500
Unit 10 MG400 MG401 GRG500
Unit 11 MG400 MG401 GRG500
Unit 12 MG400 MG401 GRG500
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany