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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF YEAST POLY(A) POLYMERASE WITH ATP AND OLIGO(A)
Keywords PROTEIN RNA COMPLEX ATP POLYMERASE COMPLEX, TRANSFERASE-RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2Q66     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    X 5 110 0
2  Protein   POLY(A) POLYMERASE  A 519 4152 0
3  Ligand   5'-R(P*AP*AP*AP*AP*A)-3'  X 2 0 8
4  Ligand   POLY(A) POLYMERASE  A 17 0 92
5 Water     509 0 509
total       1052 4262 609

Proteins
Unit 2 LYS5 VAL6 PHE7 GLY8 ILE9 THR10 GLY11 PRO12 VAL13 SER14 THR15 VAL16 GLY17 ALA18 THR19 ALA20 ALA21 GLU22 ASN23 LYS24 LEU25 ASN26 ASP27 SER28 LEU29 ILE30 GLN31 GLU32 LEU33 LYS34 LYS35 GLU36 GLY37 SER38 PHE39 GLU40 THR41 GLU42 GLN43 GLU44 THR45 ALA46 ASN47 ARG48 VAL49 GLN50 VAL51 LEU52 LYS53 ILE54 LEU55 GLN56 GLU57 LEU58 ALA59 GLN60 ARG61 PHE62 VAL63 TYR64 GLU65 VAL66 SER67 LYS68 LYS69 LYS70 ASN71 MET72 SER73 ASP74 GLY75 MET76 ALA77 ARG78 ASP79 ALA80 GLY81 GLY82 LYS83 ILE84 PHE85 THR86 TYR87 GLY88 SER89 TYR90 ARG91 LEU92 GLY93 VAL94 HIS95 GLY96 PRO97 GLY98 SER99 ASP100 ILE101 ASP102 THR103 LEU104 VAL105 VAL106 VAL107 PRO108 LYS109 HIS110 VAL111 THR112 ARG113 GLU114 ASP115 PHE116 PHE117 THR118 VAL119 PHE120 ASP121 SER122 LEU123 LEU124 ARG125 GLU126 ARG127 LYS128 GLU129 LEU130 ASP131 GLU132 ILE133 ALA134 PRO135 VAL136 PRO137 ASP138 ALA139 PHE140 VAL141 PRO142 ILE143 ILE144 LYS145 ILE146 LYS147 PHE148 SER149 GLY150 ILE151 SER152 ILE153 ALA154 LEU155 ILE156 CYS157 ALA158 ARG159 LEU160 ASP161 GLN162 PRO163 GLN164 VAL165 PRO166 LEU167 SER168 LEU169 THR170 LEU171 SER172 ASP173 LYS174 ASN175 LEU176 LEU177 ARG178 ASN179 LEU180 ASP181 GLU182 LYS183 ASP184 LEU185 ARG186 ALA187 LEU188 ASN189 GLY190 THR191 ARG192 VAL193 THR194 ASP195 GLU196 ILE197 LEU198 GLU199 LEU200 VAL201 PRO202 LYS203 PRO204 ASN205 VAL206 PHE207 ARG208 ILE209 ALA210 LEU211 ARG212 ALA213 ILE214 LYS215 LEU216 TRP217 ALA218 GLN219 ARG220 ARG221 ALA222 VAL223 TYR224 ALA225 ASN226 ILE227 PHE228 GLY229 PHE230 PRO231 GLY232 GLY233 VAL234 ALA235 TRP236 ALA237 MET238 LEU239 VAL240 ALA241 ARG242 ILE243 CYS244 GLN245 LEU246 TYR247 PRO248 ASN249 ALA250 CYS251 SER252 ALA253 VAL254 ILE255 LEU256 ASN257 ARG258 PHE259 PHE260 ILE261 ILE262 LEU263 SER264 GLU265 TRP266 ASN267 TRP268 PRO269 GLN270 PRO271 VAL272 ILE273 LEU274 LYS275 PRO276 ILE277 GLU278 ASP279 GLY280 PRO281 LEU282 GLN283 VAL284 ARG285 VAL286 TRP287 ASN288 PRO289 LYS290 ILE291 TYR292 ALA293 GLN294 ASP295 ARG296 SER297 HIS298 ARG299 MET300 PRO301 VAL302 ILE303 THR304 PRO305 ALA306 TYR307 PRO308 SER309 MET310 CYS311 ALA312 THR313 HIS314 ASN315 ILE316 THR317 GLU318 SER319 THR320 LYS321 LYS322 VAL323 ILE324 LEU325 GLN326 GLU327 PHE328 VAL329 ARG330 GLY331 VAL332 GLN333 ILE334 THR335 ASN336 ASP337 ILE338 PHE339 SER340 ASN341 LYS342 LYS343 SER344 TRP345 ALA346 ASN347 LEU348 PHE349 GLU350 LYS351 ASN352 ASP353 PHE354 PHE355 PHE356 ARG357 TYR358 LYS359 PHE360 TYR361 LEU362 GLU363 ILE364 THR365 ALA366 TYR367 THR368 ARG369 GLY370 SER371 ASP372 GLU373 GLN374 HIS375 LEU376 LYS377 TRP378 SER379 GLY380 LEU381 VAL382 GLU383 SER384 LYS385 VAL386 ARG387 LEU388 LEU389 VAL390 MET391 LYS392 LEU393 GLU394 VAL395 LEU396 ALA397 GLY398 ILE399 LYS400 ILE401 ALA402 HIS403 PRO404 PHE405 THR406 LYS407 PRO408 PHE409 GLU410 SER411 SER412 TYR413 CYS414 CYS415 PRO416 THR417 GLU418 ASP419 ASP420 TYR421 GLU422 MET423 ILE424 GLN425 ASP426 LYS427 TYR428 GLY429 SER430 HIS431 LYS432 THR433 GLU434 THR435 ALA436 LEU437 ASN438 ALA439 LEU440 LYS441 LEU442 VAL443 THR444 ASP445 GLU446 ASN447 GLU449 GLU450 GLU451 SER452 ILE453 LYS454 ASP455 ALA456 PRO457 LYS458 ALA459 TYR460 LEU461 SER462 THR463 MET464 TYR465 ILE466 GLY467 LEU468 ASP469 PHE470 ASN471 ILE472 LYS478 VAL479 ASP480 ILE481 HIS482 ILE483 PRO484 CYS485 THR486 GLU487 PHE488 VAL489 ASN490 LEU491 CYS492 ARG493 SER494 PHE495 ASN496 GLU497 ASP498 TYR499 GLY500 ASP501 HIS502 LYS503 VAL504 PHE505 ASN506 LEU507 ALA508 LEU509 ARG510 PHE511 VAL512 LYS513 GLY514 TYR515 ASP516 LEU517 PRO518 ASP519 GLU520 VAL521 PHE522 ASP523 GLU524 ASN525 GLU526 LYS527 ARG528 PRO529

Nucleic acids
Unit 1 A1 A2 A3 A4 A5

Ligands
Unit 3 EDO709 EDO715
Unit 4 MG602 ATP605 EDO701 EDO702 EDO703 EDO704 EDO705 EDO706 EDO707 EDO708 EDO710 EDO711 EDO712 EDO713 EDO714 EDO716 EDO717

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany