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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGC-NF2- AAUUGGCG, WITH AN INCORPORATED 2,4-DIFLUOROTOLUYL RESIDUE (NF2)
Keywords 2,4-DIFLUOROTOLUYL NUCLEOSIDE, CHEMICAL MODIFICATION, RNA, RNAI, HYDROGEN BOND
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2Q1O     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 12 233 21
2  RNA    B 12 233 21
3  RNA    C 12 233 21
4  RNA    D 12 233 21
5 Water     323 0 323
total       371 932 407

Nucleic acids
Unit 1 C101 G102 C103 NF2104 A105 A106 U107 U108 G109 G110 C111 G112
Unit 2 C101 G102 C103 NF2104 A105 A106 U107 U108 G109 G110 C111 G112
Unit 3 C101 G102 C103 NF2104 A105 A106 U107 U108 G109 G110 C111 G112
Unit 4 C101 G102 C103 NF2104 A105 A106 U107 U108 G109 G110 C111 G112

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany