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Sequence, Chains, Asymmetric and Biological Units

Title PROTEIN-RNA INTERACTION INVOLVING KH1 DOMAIN FROM HUMAN POLY(C)-BINDING PROTEIN-2
Keywords PROTEIN-RNA COMPLEX, RNA AND DNA BINDING PROTEIN/RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2PY9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    E 12 245 0
2  RNA    F 12 245 0
3  Protein   POLY(RC)-BINDING PROTEIN 2  A 72 526 24
4  Protein   POLY(RC)-BINDING PROTEIN 2  B 69 502 24
5  Protein   POLY(RC)-BINDING PROTEIN 2  C 69 502 24
6  Protein   POLY(RC)-BINDING PROTEIN 2  D 69 502 24
7 Water     51 0 51
total       354 2522 147

Proteins
Unit 3 LYS10 ASN11 VAL12 THR13 LEU14 THR15 ILE16 ARG17 LEU18 LEU19 MSE20 HIS21 GLY22 LYS23 GLU24 VAL25 GLY26 SER27 ILE28 ILE29 GLY30 LYS31 LYS32 GLY33 GLU34 SER35 VAL36 LYS37 LYS38 MSE39 ARG40 GLU41 GLU42 SER43 GLY44 ALA45 ARG46 ILE47 ASN48 ILE49 SER50 GLU51 GLY52 ASN53 CYS54 PRO55 GLU56 ARG57 ILE58 ILE59 THR60 LEU61 ALA62 GLY63 PRO64 THR65 ASN66 ALA67 ILE68 PHE69 LYS70 ALA71 PHE72 ALA73 MSE74 ILE75 ILE76 ASP77 LYS78 LEU79 GLU80 GLU81
Unit 4 THR13 LEU14 THR15 ILE16 ARG17 LEU18 LEU19 MSE20 HIS21 GLY22 LYS23 GLU24 VAL25 GLY26 SER27 ILE28 ILE29 GLY30 LYS31 LYS32 GLY33 GLU34 SER35 VAL36 LYS37 LYS38 MSE39 ARG40 GLU41 GLU42 SER43 GLY44 ALA45 ARG46 ILE47 ASN48 ILE49 SER50 GLU51 GLY52 ASN53 CYS54 PRO55 GLU56 ARG57 ILE58 ILE59 THR60 LEU61 ALA62 GLY63 PRO64 THR65 ASN66 ALA67 ILE68 PHE69 LYS70 ALA71 PHE72 ALA73 MSE74 ILE75 ILE76 ASP77 LYS78 LEU79 GLU80 GLU81
Unit 5 THR13 LEU14 THR15 ILE16 ARG17 LEU18 LEU19 MSE20 HIS21 GLY22 LYS23 GLU24 VAL25 GLY26 SER27 ILE28 ILE29 GLY30 LYS31 LYS32 GLY33 GLU34 SER35 VAL36 LYS37 LYS38 MSE39 ARG40 GLU41 GLU42 SER43 GLY44 ALA45 ARG46 ILE47 ASN48 ILE49 SER50 GLU51 GLY52 ASN53 CYS54 PRO55 GLU56 ARG57 ILE58 ILE59 THR60 LEU61 ALA62 GLY63 PRO64 THR65 ASN66 ALA67 ILE68 PHE69 LYS70 ALA71 PHE72 ALA73 MSE74 ILE75 ILE76 ASP77 LYS78 LEU79 GLU80 GLU81
Unit 6 THR13 LEU14 THR15 ILE16 ARG17 LEU18 LEU19 MSE20 HIS21 GLY22 LYS23 GLU24 VAL25 GLY26 SER27 ILE28 ILE29 GLY30 LYS31 LYS32 GLY33 GLU34 SER35 VAL36 LYS37 LYS38 MSE39 ARG40 GLU41 GLU42 SER43 GLY44 ALA45 ARG46 ILE47 ASN48 ILE49 SER50 GLU51 GLY52 ASN53 CYS54 PRO55 GLU56 ARG57 ILE58 ILE59 THR60 LEU61 ALA62 GLY63 PRO64 THR65 ASN66 ALA67 ILE68 PHE69 LYS70 ALA71 PHE72 ALA73 MSE74 ILE75 ILE76 ASP77 LYS78 LEU79 GLU80 GLU81

Nucleic acids
Unit 1 A1 A2 C3 C4 C5 U6 A7 A8 C9 C10 C11 U12
Unit 2 A1 A2 C3 C4 C5 U6 A7 A8 C9 C10 C11 U12

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany