2PVC - Sequence, Chains, Asymmetric and Biological Units

• Title: DNMT3L RECOGNIZES UNMETHYLATED HISTONE H3 LYSINE 4
• Keywords: DNMT3L, UNMETHYLATED H3K4, DE NOVO DNA METHYLATION, TRANSFERASE REGULATOR
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2PVC	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE	B	347	2785	0
2	Protein	HISTONE H3 PEPTIDE	D	7	54	0
3	Protein	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE	A	347	2785	0
4	Protein	HISTONE H3 PEPTIDE	E	7	54	0
5	Protein	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE	C	347	2785	0
6	Protein	HISTONE H3 PEPTIDE	F	7	54	0
7	Ligand	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE	A	3	0	3
8	Ligand	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE	B	3	0	3
9	Ligand	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE	C	3	0	3
total				1071	8517	9

Proteins

Unit 1	GLY 34 ARG 35 ASP 36 LEU 37 ILE 38 ALA 39 TYR 40 GLU 41 VAL 42 LYS 43 ALA 44 ASN 45 GLN 46 ARG 47 ASN 48 ILE 49 GLU 50 ASP 51 ILE 52 CYS 53 ILE 54 CYS 55 CYS 56 GLY 57 SER 58 LEU 59 GLN 60 VAL 61 HIS 62 THR 63 GLN 64 HIS 65 PRO 66 LEU 67 PHE 68 GLU 69 GLY 70 GLY 71 ILE 72 CYS 73 ALA 74 PRO 75 CYS 76 LYS 77 ASP 78 LYS 79 PHE 80 LEU 81 ASP 82 ALA 83 LEU 84 PHE 85 LEU 86 TYR 87 ASP 88 ASP 89 ASP 90 GLY 91 TYR 92 GLN 93 SER 94 TYR 95 CYS 96 SER 97 ILE 98 CYS 99 CYS 100 SER 101 GLY 102 GLU 103 THR 104 LEU 105 LEU 106 ILE 107 CYS 108 GLY 109 ASN 110 PRO 111 ASP 112 CYS 113 THR 114 ARG 115 CYS 116 TYR 117 CYS 118 PHE 119 GLU 120 CYS 121 VAL 122 ASP 123 SER 124 LEU 125 VAL 126 GLY 127 PRO 128 GLY 129 THR 130 SER 131 GLY 132 LYS 133 VAL 134 HIS 135 ALA 136 MET 137 SER 138 ASN 139 TRP 140 VAL 141 CYS 142 TYR 143 LEU 144 CYS 145 LEU 146 PRO 147 SER 148 SER 149 ARG 150 SER 151 GLY 152 LEU 153 LEU 154 GLN 155 ARG 156 ARG 157 ARG 158 LYS 159 TRP 160 ARG 161 SER 162 GLN 163 LEU 164 LYS 165 ALA 166 PHE 167 TYR 168 ASP 169 ARG 170 GLU 171 SER 172 GLU 173 ASN 174 PRO 175 LEU 176 GLU 177 MET 178 PHE 179 GLU 180 THR 181 VAL 182 PRO 183 VAL 184 TRP 185 ARG 186 ARG 187 GLN 188 PRO 189 VAL 190 ARG 191 VAL 192 LEU 193 SER 194 LEU 195 PHE 196 GLU 197 ASP 198 ILE 199 LYS 200 LYS 201 GLU 202 LEU 203 THR 204 SER 205 LEU 206 GLY 207 PHE 208 LEU 209 GLU 210 SER 211 GLY 212 SER 213 ASP 214 PRO 215 GLY 216 GLN 217 LEU 218 LYS 219 HIS 220 VAL 221 VAL 222 ASP 223 VAL 224 THR 225 ASP 226 THR 227 VAL 228 ARG 229 LYS 230 ASP 231 VAL 232 GLU 233 GLU 234 TRP 235 GLY 236 PRO 237 PHE 238 ASP 239 LEU 240 VAL 241 TYR 242 GLY 243 ALA 244 THR 245 PRO 246 PRO 247 LEU 248 GLY 249 HIS 250 THR 251 CYS 252 ASP 253 ARG 254 PRO 255 PRO 256 SER 257 TRP 258 TYR 259 LEU 260 PHE 261 GLN 262 PHE 263 HIS 264 ARG 265 LEU 266 LEU 267 GLN 268 TYR 269 ALA 270 ARG 271 PRO 272 LYS 273 PRO 274 GLY 275 SER 276 PRO 277 GLY 278 PRO 279 PHE 280 PHE 281 TRP 282 MET 283 PHE 284 VAL 285 ASP 286 ASN 287 LEU 288 VAL 289 LEU 290 ASN 291 LYS 292 GLU 293 ASP 294 LEU 295 ASP 296 VAL 297 ALA 298 SER 299 ARG 300 PHE 301 LEU 302 GLU 303 MET 304 GLU 305 PRO 306 VAL 307 THR 308 ILE 309 PRO 310 ASP 311 VAL 312 HIS 313 GLY 314 GLY 315 SER 316 LEU 317 GLN 318 ASN 319 ALA 320 VAL 321 ARG 322 VAL 323 TRP 324 SER 325 ASN 326 ILE 327 PRO 328 ALA 329 ILE 330 ARG 331 SER 332 ARG 333 HIS 334 TRP 335 ALA 336 LEU 337 VAL 338 SER 339 GLU 340 GLU 341 GLU 342 LEU 343 SER 344 LEU 345 LEU 346 ALA 347 GLN 348 ASN 349 LYS 350 GLN 351 SER 352 SER 353 LYS 354 LEU 355 ALA 356 ALA 357 LYS 358 TRP 359 PRO 360 THR 361 LYS 362 LEU 363 VAL 364 LYS 365 ASN 366 CYS 367 PHE 368 LEU 369 PRO 370 LEU 371 ARG 372 GLU 373 TYR 374 PHE 375 LYS 376 TYR 377 PHE 378 SER 379 THR 380
Unit 2	ALA 501 ARG 502 THR 503 LYS 504 GLN 505 THR 506 ALA 507
Unit 3	GLY 34 ARG 35 ASP 36 LEU 37 ILE 38 ALA 39 TYR 40 GLU 41 VAL 42 LYS 43 ALA 44 ASN 45 GLN 46 ARG 47 ASN 48 ILE 49 GLU 50 ASP 51 ILE 52 CYS 53 ILE 54 CYS 55 CYS 56 GLY 57 SER 58 LEU 59 GLN 60 VAL 61 HIS 62 THR 63 GLN 64 HIS 65 PRO 66 LEU 67 PHE 68 GLU 69 GLY 70 GLY 71 ILE 72 CYS 73 ALA 74 PRO 75 CYS 76 LYS 77 ASP 78 LYS 79 PHE 80 LEU 81 ASP 82 ALA 83 LEU 84 PHE 85 LEU 86 TYR 87 ASP 88 ASP 89 ASP 90 GLY 91 TYR 92 GLN 93 SER 94 TYR 95 CYS 96 SER 97 ILE 98 CYS 99 CYS 100 SER 101 GLY 102 GLU 103 THR 104 LEU 105 LEU 106 ILE 107 CYS 108 GLY 109 ASN 110 PRO 111 ASP 112 CYS 113 THR 114 ARG 115 CYS 116 TYR 117 CYS 118 PHE 119 GLU 120 CYS 121 VAL 122 ASP 123 SER 124 LEU 125 VAL 126 GLY 127 PRO 128 GLY 129 THR 130 SER 131 GLY 132 LYS 133 VAL 134 HIS 135 ALA 136 MET 137 SER 138 ASN 139 TRP 140 VAL 141 CYS 142 TYR 143 LEU 144 CYS 145 LEU 146 PRO 147 SER 148 SER 149 ARG 150 SER 151 GLY 152 LEU 153 LEU 154 GLN 155 ARG 156 ARG 157 ARG 158 LYS 159 TRP 160 ARG 161 SER 162 GLN 163 LEU 164 LYS 165 ALA 166 PHE 167 TYR 168 ASP 169 ARG 170 GLU 171 SER 172 GLU 173 ASN 174 PRO 175 LEU 176 GLU 177 MET 178 PHE 179 GLU 180 THR 181 VAL 182 PRO 183 VAL 184 TRP 185 ARG 186 ARG 187 GLN 188 PRO 189 VAL 190 ARG 191 VAL 192 LEU 193 SER 194 LEU 195 PHE 196 GLU 197 ASP 198 ILE 199 LYS 200 LYS 201 GLU 202 LEU 203 THR 204 SER 205 LEU 206 GLY 207 PHE 208 LEU 209 GLU 210 SER 211 GLY 212 SER 213 ASP 214 PRO 215 GLY 216 GLN 217 LEU 218 LYS 219 HIS 220 VAL 221 VAL 222 ASP 223 VAL 224 THR 225 ASP 226 THR 227 VAL 228 ARG 229 LYS 230 ASP 231 VAL 232 GLU 233 GLU 234 TRP 235 GLY 236 PRO 237 PHE 238 ASP 239 LEU 240 VAL 241 TYR 242 GLY 243 ALA 244 THR 245 PRO 246 PRO 247 LEU 248 GLY 249 HIS 250 THR 251 CYS 252 ASP 253 ARG 254 PRO 255 PRO 256 SER 257 TRP 258 TYR 259 LEU 260 PHE 261 GLN 262 PHE 263 HIS 264 ARG 265 LEU 266 LEU 267 GLN 268 TYR 269 ALA 270 ARG 271 PRO 272 LYS 273 PRO 274 GLY 275 SER 276 PRO 277 GLY 278 PRO 279 PHE 280 PHE 281 TRP 282 MET 283 PHE 284 VAL 285 ASP 286 ASN 287 LEU 288 VAL 289 LEU 290 ASN 291 LYS 292 GLU 293 ASP 294 LEU 295 ASP 296 VAL 297 ALA 298 SER 299 ARG 300 PHE 301 LEU 302 GLU 303 MET 304 GLU 305 PRO 306 VAL 307 THR 308 ILE 309 PRO 310 ASP 311 VAL 312 HIS 313 GLY 314 GLY 315 SER 316 LEU 317 GLN 318 ASN 319 ALA 320 VAL 321 ARG 322 VAL 323 TRP 324 SER 325 ASN 326 ILE 327 PRO 328 ALA 329 ILE 330 ARG 331 SER 332 ARG 333 HIS 334 TRP 335 ALA 336 LEU 337 VAL 338 SER 339 GLU 340 GLU 341 GLU 342 LEU 343 SER 344 LEU 345 LEU 346 ALA 347 GLN 348 ASN 349 LYS 350 GLN 351 SER 352 SER 353 LYS 354 LEU 355 ALA 356 ALA 357 LYS 358 TRP 359 PRO 360 THR 361 LYS 362 LEU 363 VAL 364 LYS 365 ASN 366 CYS 367 PHE 368 LEU 369 PRO 370 LEU 371 ARG 372 GLU 373 TYR 374 PHE 375 LYS 376 TYR 377 PHE 378 SER 379 THR 380
Unit 4	ALA 501 ARG 502 THR 503 LYS 504 GLN 505 THR 506 ALA 507
Unit 5	GLY 34 ARG 35 ASP 36 LEU 37 ILE 38 ALA 39 TYR 40 GLU 41 VAL 42 LYS 43 ALA 44 ASN 45 GLN 46 ARG 47 ASN 48 ILE 49 GLU 50 ASP 51 ILE 52 CYS 53 ILE 54 CYS 55 CYS 56 GLY 57 SER 58 LEU 59 GLN 60 VAL 61 HIS 62 THR 63 GLN 64 HIS 65 PRO 66 LEU 67 PHE 68 GLU 69 GLY 70 GLY 71 ILE 72 CYS 73 ALA 74 PRO 75 CYS 76 LYS 77 ASP 78 LYS 79 PHE 80 LEU 81 ASP 82 ALA 83 LEU 84 PHE 85 LEU 86 TYR 87 ASP 88 ASP 89 ASP 90 GLY 91 TYR 92 GLN 93 SER 94 TYR 95 CYS 96 SER 97 ILE 98 CYS 99 CYS 100 SER 101 GLY 102 GLU 103 THR 104 LEU 105 LEU 106 ILE 107 CYS 108 GLY 109 ASN 110 PRO 111 ASP 112 CYS 113 THR 114 ARG 115 CYS 116 TYR 117 CYS 118 PHE 119 GLU 120 CYS 121 VAL 122 ASP 123 SER 124 LEU 125 VAL 126 GLY 127 PRO 128 GLY 129 THR 130 SER 131 GLY 132 LYS 133 VAL 134 HIS 135 ALA 136 MET 137 SER 138 ASN 139 TRP 140 VAL 141 CYS 142 TYR 143 LEU 144 CYS 145 LEU 146 PRO 147 SER 148 SER 149 ARG 150 SER 151 GLY 152 LEU 153 LEU 154 GLN 155 ARG 156 ARG 157 ARG 158 LYS 159 TRP 160 ARG 161 SER 162 GLN 163 LEU 164 LYS 165 ALA 166 PHE 167 TYR 168 ASP 169 ARG 170 GLU 171 SER 172 GLU 173 ASN 174 PRO 175 LEU 176 GLU 177 MET 178 PHE 179 GLU 180 THR 181 VAL 182 PRO 183 VAL 184 TRP 185 ARG 186 ARG 187 GLN 188 PRO 189 VAL 190 ARG 191 VAL 192 LEU 193 SER 194 LEU 195 PHE 196 GLU 197 ASP 198 ILE 199 LYS 200 LYS 201 GLU 202 LEU 203 THR 204 SER 205 LEU 206 GLY 207 PHE 208 LEU 209 GLU 210 SER 211 GLY 212 SER 213 ASP 214 PRO 215 GLY 216 GLN 217 LEU 218 LYS 219 HIS 220 VAL 221 VAL 222 ASP 223 VAL 224 THR 225 ASP 226 THR 227 VAL 228 ARG 229 LYS 230 ASP 231 VAL 232 GLU 233 GLU 234 TRP 235 GLY 236 PRO 237 PHE 238 ASP 239 LEU 240 VAL 241 TYR 242 GLY 243 ALA 244 THR 245 PRO 246 PRO 247 LEU 248 GLY 249 HIS 250 THR 251 CYS 252 ASP 253 ARG 254 PRO 255 PRO 256 SER 257 TRP 258 TYR 259 LEU 260 PHE 261 GLN 262 PHE 263 HIS 264 ARG 265 LEU 266 LEU 267 GLN 268 TYR 269 ALA 270 ARG 271 PRO 272 LYS 273 PRO 274 GLY 275 SER 276 PRO 277 GLY 278 PRO 279 PHE 280 PHE 281 TRP 282 MET 283 PHE 284 VAL 285 ASP 286 ASN 287 LEU 288 VAL 289 LEU 290 ASN 291 LYS 292 GLU 293 ASP 294 LEU 295 ASP 296 VAL 297 ALA 298 SER 299 ARG 300 PHE 301 LEU 302 GLU 303 MET 304 GLU 305 PRO 306 VAL 307 THR 308 ILE 309 PRO 310 ASP 311 VAL 312 HIS 313 GLY 314 GLY 315 SER 316 LEU 317 GLN 318 ASN 319 ALA 320 VAL 321 ARG 322 VAL 323 TRP 324 SER 325 ASN 326 ILE 327 PRO 328 ALA 329 ILE 330 ARG 331 SER 332 ARG 333 HIS 334 TRP 335 ALA 336 LEU 337 VAL 338 SER 339 GLU 340 GLU 341 GLU 342 LEU 343 SER 344 LEU 345 LEU 346 ALA 347 GLN 348 ASN 349 LYS 350 GLN 351 SER 352 SER 353 LYS 354 LEU 355 ALA 356 ALA 357 LYS 358 TRP 359 PRO 360 THR 361 LYS 362 LEU 363 VAL 364 LYS 365 ASN 366 CYS 367 PHE 368 LEU 369 PRO 370 LEU 371 ARG 372 GLU 373 TYR 374 PHE 375 LYS 376 TYR 377 PHE 378 SER 379 THR 380
Unit 6	ALA 501 ARG 502 THR 503 LYS 504 GLN 505 THR 506 ALA 507

Ligands

Unit 7	ZN 601 ZN 602 ZN 603
Unit 8	ZN 604 ZN 605 ZN 606
Unit 9	ZN 607 ZN 608 ZN 609