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Title | CRYSTAL STRUCTURE OF THE P. ABYSSI EXOSOME RNASE PH RING COMPLEXED WITH A SINGLE STRANDED 10-MER POLY(A) RNA | |
Keywords | RNASE PH, HYDROLASE/HYDROLASE/RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2PO1 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | C | 7 | 154 | 0 | |
2 | Protein | PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 | A | 236 | 1845 | 0 |
3 | Protein | PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 | B | 267 | 2047 | 0 |
4 | Ligand | PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 | A | 2 | 0 | 16 |
5 | Ligand | PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 | B | 3 | 0 | 24 |
6 | Water | 308 | 0 | 308 | ||
total | 823 | 4046 | 348 |
Unit 2 | LYS9 LEU10 ILE11 ASP12 GLU13 ASN14 GLY15 ARG16 ARG17 ILE18 ASP19 GLY20 ARG21 LYS22 LYS23 TYR24 GLU25 LEU26 ARG27 PRO28 ILE29 LYS30 MET31 GLU32 VAL33 GLY34 VAL35 LEU36 LYS37 ASN38 ALA39 ASN40 GLY41 SER42 ALA43 TYR44 ILE45 GLU46 TRP47 GLY48 LYS49 ASN50 LYS51 ILE52 ILE53 ALA54 ALA55 VAL56 TYR57 GLY58 PRO59 ARG60 GLU61 LEU62 HIS63 PRO64 LYS65 HIS66 LEU67 GLN68 ARG69 PRO70 ASP71 ARG72 ALA73 ILE74 LEU75 ARG76 VAL77 ARG78 TYR79 ASN80 MET81 ALA82 PRO83 PHE84 SER85 VAL86 GLU87 GLU88 ARG89 LYS90 LYS91 PRO92 GLY93 PRO94 ASP95 ARG96 ARG97 SER98 ILE99 GLU100 ILE101 SER102 LYS103 VAL104 ILE105 LYS106 GLY107 ALA108 LEU109 GLU110 PRO111 ALA112 LEU113 ILE114 LEU115 GLU116 MET117 PHE118 PRO119 ARG120 THR121 ALA122 ILE123 ASP124 VAL125 PHE126 ILE127 GLU128 VAL129 LEU130 GLN131 ALA132 ASP133 ALA134 GLY135 THR136 ARG137 VAL138 ALA139 GLY140 ILE141 THR142 ALA143 ALA144 SER145 LEU146 ALA147 LEU148 ALA149 ASP150 ALA151 GLY152 ILE153 PRO154 MET155 ARG156 ASP157 LEU158 VAL159 ALA160 ALA161 CYS162 ALA163 ALA164 GLY165 LYS166 ILE167 GLU168 GLY169 GLU170 ILE171 VAL172 LEU173 ASP174 LEU175 ASN176 LYS177 GLU178 GLU179 ASP180 ASN181 TYR182 GLY183 GLU184 ALA185 ASP186 VAL187 PRO188 VAL189 ALA190 ILE191 MET192 PRO193 LEU194 LYS195 ASN196 ASP197 ILE198 THR199 LEU200 LEU201 GLN202 MET203 ASP204 GLY205 TYR206 LEU207 THR208 LYS209 ASP210 GLU211 PHE212 ILE213 GLU214 ALA215 VAL216 LYS217 LEU218 ALA219 ILE220 LYS221 GLY222 ALA223 LYS224 ALA225 VAL226 TYR227 GLN228 LYS229 GLN230 ARG231 GLU232 ALA233 LEU234 LYS235 GLU236 LYS237 TYR238 LEU239 LYS240 ILE241 ALA242 GLN243 GLU244 |
Unit 3 | ALA8 GLY9 ILE10 MET11 ARG12 ASP13 HIS14 ILE15 ILE16 ASN17 LEU18 LEU19 LYS20 GLU21 GLY22 LYS23 ARG24 ILE25 ASP26 ASP27 ARG28 GLY29 PHE30 GLU31 ASP32 TYR33 ARG34 PRO35 ILE36 GLU37 ILE38 GLU39 VAL40 GLY41 VAL42 ILE43 GLU44 LYS45 ALA46 GLU47 GLY48 SER49 ALA50 LEU51 VAL52 LYS53 LEU54 GLY55 SER56 THR57 GLN58 VAL59 LEU60 VAL61 GLY62 ILE63 LYS64 THR65 SER66 LEU67 GLY68 GLU69 PRO70 PHE71 PRO72 ASP73 THR74 PRO75 ASN76 MET77 GLY78 VAL79 MET80 THR81 THR82 ASN83 VAL84 GLU85 LEU86 VAL87 PRO88 LEU89 ALA90 SER91 PRO92 THR93 PHE94 GLU95 PRO96 GLY97 PRO98 PRO99 ASP100 GLU101 ARG102 ALA103 ILE104 GLU105 LEU106 ALA107 ARG108 VAL109 ILE110 ASP111 ARG112 GLY113 ILE114 ARG115 GLU116 SER117 LYS118 ALA119 LEU120 ASN121 LEU122 GLU123 LYS124 MET125 VAL126 ILE127 VAL128 PRO129 GLY130 LYS131 ILE132 VAL133 ARG134 VAL135 VAL136 PHE137 ILE138 ASP139 VAL140 HIS141 VAL142 LEU143 ASP144 HIS145 ASP146 GLY147 ASN148 LEU149 MET150 ASP151 ALA152 ILE153 GLY154 ILE155 ALA156 ALA157 ILE158 ALA159 ALA160 LEU161 LEU162 ASN163 ALA164 ARG165 VAL166 PRO167 LYS168 VAL169 ARG170 TYR171 ASN172 GLU173 GLU174 THR175 GLY176 GLU177 VAL178 GLU179 THR180 LEU181 ASP182 GLU183 THR184 GLU185 PRO186 LEU187 PRO188 VAL189 GLU190 LYS191 ILE192 PRO193 VAL194 PRO195 VAL196 THR197 PHE198 ALA199 LYS200 ILE201 GLY202 ASN203 ILE204 LEU205 VAL206 VAL207 ASP208 PRO209 SER210 LEU211 ASP212 GLU213 GLU214 LEU215 VAL216 MET217 ASP218 GLY219 LYS220 ILE221 THR222 ILE223 THR224 THR225 ASP226 GLU227 THR228 GLY229 HIS230 ILE231 SER232 ALA233 VAL234 GLN235 LYS236 SER237 GLU238 GLY239 GLY240 ALA241 PHE242 LYS243 LEU244 GLU245 GLU246 VAL247 MET248 TYR249 ALA250 VAL251 GLU252 THR253 ALA254 PHE255 LYS256 LYS257 ALA258 GLU259 GLU260 ILE261 ARG262 LYS263 LEU264 ILE265 LEU266 GLU267 ALA268 VAL269 GLU270 LYS271 ALA272 LYS273 GLN274 |
Unit 1 | A395 A398 A400 A401 A402 A403 A404 |
Unit 4 | MPD250 MPD283 |
Unit 5 | MPD280 MPD281 MPD282 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |