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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL ANALYSIS OF A CYTOPLASMIC DYNEIN LIGHT CHAIN- INTERMEDIATE CHAIN COMPLEX
Keywords DYNEIN INTERMEDIATE CHAIN, DYNEIN LIGHT CHAIN, LC8, PIN, TCTEX1, STRUCTURAL PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2PG1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DYNEIN LIGHT CHAIN 1, CYTOPLASMIC  A 85 693 0
2  Protein   DYNEIN LIGHT CHAIN 1, CYTOPLASMIC  B 85 693 0
3  Protein   DYNEIN LIGHT CHAIN 1, CYTOPLASMIC  C 85 697 0
4  Protein   DYNEIN LIGHT CHAIN 1, CYTOPLASMIC  D 85 692 0
5  Protein   DYNEIN LIGHT CHAIN TCTEX-TYPE  E 104 788 24
6  Protein   DYNEIN LIGHT CHAIN TCTEX-TYPE  F 103 778 24
7  Protein   DYNEIN LIGHT CHAIN TCTEX-TYPE  G 104 788 24
8  Protein   DYNEIN LIGHT CHAIN TCTEX-TYPE  H 103 783 24
9  Protein   CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 2  I 27 216 0
10  Protein   CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 2  J 29 226 0
11  Protein   CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 2  K 29 226 0
12  Protein   CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 2  L 29 226 0
13  Ligand   DYNEIN LIGHT CHAIN 1, CYTOPLASMIC  C 1 0 5
14  Ligand   DYNEIN LIGHT CHAIN 1, CYTOPLASMIC  D 1 0 5
15  Ligand   DYNEIN LIGHT CHAIN TCTEX-TYPE  E 1 0 5
16  Ligand   DYNEIN LIGHT CHAIN TCTEX-TYPE  G 1 0 5
17  Ligand   CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 2  J 1 0 5
18 Water     24 0 24
total       897 6806 145

Proteins
Unit 1 LYS5 ALA6 VAL7 ILE8 LYS9 ASN10 ALA11 ASP12 MET13 SER14 GLU15 GLU16 MET17 GLN18 GLN19 ASP20 ALA21 VAL22 ASP23 CYS24 ALA25 THR26 GLN27 ALA28 LEU29 GLU30 LYS31 TYR32 ASN33 ILE34 GLU35 LYS36 ASP37 ILE38 ALA39 ALA40 TYR41 ILE42 LYS43 LYS44 GLU45 PHE46 ASP47 LYS48 LYS49 TYR50 ASN51 PRO52 THR53 TRP54 HIS55 CYS56 ILE57 VAL58 GLY59 ARG60 ASN61 PHE62 GLY63 SER64 TYR65 VAL66 THR67 HIS68 GLU69 THR70 ARG71 HIS72 PHE73 ILE74 TYR75 PHE76 TYR77 LEU78 GLY79 GLN80 VAL81 ALA82 ILE83 LEU84 LEU85 PHE86 LYS87 SER88 GLY89
Unit 2 LYS5 ALA6 VAL7 ILE8 LYS9 ASN10 ALA11 ASP12 MET13 SER14 GLU15 GLU16 MET17 GLN18 GLN19 ASP20 ALA21 VAL22 ASP23 CYS24 ALA25 THR26 GLN27 ALA28 LEU29 GLU30 LYS31 TYR32 ASN33 ILE34 GLU35 LYS36 ASP37 ILE38 ALA39 ALA40 TYR41 ILE42 LYS43 LYS44 GLU45 PHE46 ASP47 LYS48 LYS49 TYR50 ASN51 PRO52 THR53 TRP54 HIS55 CYS56 ILE57 VAL58 GLY59 ARG60 ASN61 PHE62 GLY63 SER64 TYR65 VAL66 THR67 HIS68 GLU69 THR70 ARG71 HIS72 PHE73 ILE74 TYR75 PHE76 TYR77 LEU78 GLY79 GLN80 VAL81 ALA82 ILE83 LEU84 LEU85 PHE86 LYS87 SER88 GLY89
Unit 3 LYS5 ALA6 VAL7 ILE8 LYS9 ASN10 ALA11 ASP12 MET13 SER14 GLU15 GLU16 MET17 GLN18 GLN19 ASP20 ALA21 VAL22 ASP23 CYS24 ALA25 THR26 GLN27 ALA28 LEU29 GLU30 LYS31 TYR32 ASN33 ILE34 GLU35 LYS36 ASP37 ILE38 ALA39 ALA40 TYR41 ILE42 LYS43 LYS44 GLU45 PHE46 ASP47 LYS48 LYS49 TYR50 ASN51 PRO52 THR53 TRP54 HIS55 CYS56 ILE57 VAL58 GLY59 ARG60 ASN61 PHE62 GLY63 SER64 TYR65 VAL66 THR67 HIS68 GLU69 THR70 ARG71 HIS72 PHE73 ILE74 TYR75 PHE76 TYR77 LEU78 GLY79 GLN80 VAL81 ALA82 ILE83 LEU84 LEU85 PHE86 LYS87 SER88 GLY89
Unit 4 LYS5 ALA6 VAL7 ILE8 LYS9 ASN10 ALA11 ASP12 MET13 SER14 GLU15 GLU16 MET17 GLN18 GLN19 ASP20 ALA21 VAL22 ASP23 CYS24 ALA25 THR26 GLN27 ALA28 LEU29 GLU30 LYS31 TYR32 ASN33 ILE34 GLU35 LYS36 ASP37 ILE38 ALA39 ALA40 TYR41 ILE42 LYS43 LYS44 GLU45 PHE46 ASP47 LYS48 LYS49 TYR50 ASN51 PRO52 THR53 TRP54 HIS55 CYS56 ILE57 VAL58 GLY59 ARG60 ASN61 PHE62 GLY63 SER64 TYR65 VAL66 THR67 HIS68 GLU69 THR70 ARG71 HIS72 PHE73 ILE74 TYR75 PHE76 TYR77 LEU78 GLY79 GLN80 VAL81 ALA82 ILE83 LEU84 LEU85 PHE86 LYS87 SER88 GLY89
Unit 5 SER8 GLN9 PHE10 ILE11 VAL12 ASP13 ASP14 VAL15 SER16 LYS17 THR18 ILE19 LYS20 GLU21 ALA22 ILE23 GLU24 THR25 THR26 ILE27 GLY28 GLY29 ASN30 ALA31 TYR32 GLN33 HIS34 ASP35 LYS36 VAL37 ASN38 ASN39 TRP40 THR41 GLY42 GLN43 VAL44 VAL45 GLU46 ASN47 CYS48 LEU49 THR50 VAL51 LEU52 THR53 LYS54 GLU55 GLN56 LYS57 PRO58 TYR59 LYS60 TYR61 ILE62 VAL63 THR64 ALA65 MSE66 ILE67 MSE68 GLN69 LYS70 ASN71 GLY72 ALA73 GLY74 LEU75 HIS76 THR77 ALA78 SER79 SER80 CYS81 TYR82 TRP83 ASN84 ASN85 ASP86 THR87 ASP88 GLY89 SER90 CYS91 THR92 VAL93 ARG94 TRP95 GLU96 ASN97 LYS98 THR99 MSE100 TYR101 CYS102 ILE103 VAL104 SER105 VAL106 PHE107 GLY108 LEU109 ALA110 VAL111
Unit 6 GLN9 PHE10 ILE11 VAL12 ASP13 ASP14 VAL15 SER16 LYS17 THR18 ILE19 LYS20 GLU21 ALA22 ILE23 GLU24 THR25 THR26 ILE27 GLY28 GLY29 ASN30 ALA31 TYR32 GLN33 HIS34 ASP35 LYS36 VAL37 ASN38 ASN39 TRP40 THR41 GLY42 GLN43 VAL44 VAL45 GLU46 ASN47 CYS48 LEU49 THR50 VAL51 LEU52 THR53 LYS54 GLU55 GLN56 LYS57 PRO58 TYR59 LYS60 TYR61 ILE62 VAL63 THR64 ALA65 MSE66 ILE67 MSE68 GLN69 LYS70 ASN71 GLY72 ALA73 GLY74 LEU75 HIS76 THR77 ALA78 SER79 SER80 CYS81 TYR82 TRP83 ASN84 ASN85 ASP86 THR87 ASP88 GLY89 SER90 CYS91 THR92 VAL93 ARG94 TRP95 GLU96 ASN97 LYS98 THR99 MSE100 TYR101 CYS102 ILE103 VAL104 SER105 VAL106 PHE107 GLY108 LEU109 ALA110 VAL111
Unit 7 SER8 GLN9 PHE10 ILE11 VAL12 ASP13 ASP14 VAL15 SER16 LYS17 THR18 ILE19 LYS20 GLU21 ALA22 ILE23 GLU24 THR25 THR26 ILE27 GLY28 GLY29 ASN30 ALA31 TYR32 GLN33 HIS34 ASP35 LYS36 VAL37 ASN38 ASN39 TRP40 THR41 GLY42 GLN43 VAL44 VAL45 GLU46 ASN47 CYS48 LEU49 THR50 VAL51 LEU52 THR53 LYS54 GLU55 GLN56 LYS57 PRO58 TYR59 LYS60 TYR61 ILE62 VAL63 THR64 ALA65 MSE66 ILE67 MSE68 GLN69 LYS70 ASN71 GLY72 ALA73 GLY74 LEU75 HIS76 THR77 ALA78 SER79 SER80 CYS81 TYR82 TRP83 ASN84 ASN85 ASP86 THR87 ASP88 GLY89 SER90 CYS91 THR92 VAL93 ARG94 TRP95 GLU96 ASN97 LYS98 THR99 MSE100 TYR101 CYS102 ILE103 VAL104 SER105 VAL106 PHE107 GLY108 LEU109 ALA110 VAL111
Unit 8 GLN9 PHE10 ILE11 VAL12 ASP13 ASP14 VAL15 SER16 LYS17 THR18 ILE19 LYS20 GLU21 ALA22 ILE23 GLU24 THR25 THR26 ILE27 GLY28 GLY29 ASN30 ALA31 TYR32 GLN33 HIS34 ASP35 LYS36 VAL37 ASN38 ASN39 TRP40 THR41 GLY42 GLN43 VAL44 VAL45 GLU46 ASN47 CYS48 LEU49 THR50 VAL51 LEU52 THR53 LYS54 GLU55 GLN56 LYS57 PRO58 TYR59 LYS60 TYR61 ILE62 VAL63 THR64 ALA65 MSE66 ILE67 MSE68 GLN69 LYS70 ASN71 GLY72 ALA73 GLY74 LEU75 HIS76 THR77 ALA78 SER79 SER80 CYS81 TYR82 TRP83 ASN84 ASN85 ASP86 THR87 ASP88 GLY89 SER90 CYS91 THR92 VAL93 ARG94 TRP95 GLU96 ASN97 LYS98 THR99 MSE100 TYR101 CYS102 ILE103 VAL104 SER105 VAL106 PHE107 GLY108 LEU109 ALA110 VAL111
Unit 9 LYS111 LEU112 GLY113 MET114 ALA115 LYS116 ILE117 THR118 GLN119 VAL120 ASP121 PHE122 PRO123 PRO124 ARG125 GLU126 ILE127 VAL128 THR129 TYR130 THR131 LYS132 GLU133 THR134 GLN135 THR136 PRO137
Unit 10 ILE110 LYS111 LEU112 GLY113 MET114 ALA115 LYS116 ILE117 THR118 GLN119 VAL120 ASP121 PHE122 PRO123 PRO124 ARG125 GLU126 ILE127 VAL128 THR129 TYR130 THR131 LYS132 GLU133 THR134 GLN135 THR136 PRO137 VAL138
Unit 11 ILE110 LYS111 LEU112 GLY113 MET114 ALA115 LYS116 ILE117 THR118 GLN119 VAL120 ASP121 PHE122 PRO123 PRO124 ARG125 GLU126 ILE127 VAL128 THR129 TYR130 THR131 LYS132 GLU133 THR134 GLN135 THR136 PRO137 VAL138
Unit 12 ILE110 LYS111 LEU112 GLY113 MET114 ALA115 LYS116 ILE117 THR118 GLN119 VAL120 ASP121 PHE122 PRO123 PRO124 ARG125 GLU126 ILE127 VAL128 THR129 TYR130 THR131 LYS132 GLU133 THR134 GLN135 THR136 PRO137 VAL138

Ligands
Unit 13 SO490
Unit 14 SO490
Unit 15 SO4112
Unit 16 SO4112
Unit 17 SO47

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany