2PD4 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ENOYL-ACYL CARRIER PROTEIN REDUCTASE IN COMPLEX WITH HYDROXYDIPHENYL ETHER COMPOUNDS, TRICLOSAN AND DICLOSAN
• Keywords: ANTIBACTERIAL TARGET, HELICOBACTER PYLORI, TYPE II FATTY ACID BIOSYNTHESIS, ENOYL-ACP-REDUCTASE, FABI, OXIDOREDUCTAS
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2PD4	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	A	274	2102	0
2	Protein	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	B	274	2102	0
3	Protein	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	C	274	2102	0
4	Protein	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	D	274	2102	0
5	Ligand	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	A	2	0	60
6	Ligand	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	B	2	0	60
7	Ligand	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	C	2	0	60
8	Ligand	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	D	2	0	60
9	Water			218	0	218
total				1322	8408	458

Proteins

Unit 1	GLY 2 PHE 3 LEU 4 LYS 5 GLY 6 LYS 7 LYS 8 GLY 9 LEU 10 ILE 11 VAL 12 GLY 13 VAL 14 ALA 15 ASN 16 ASN 17 LYS 18 SER 19 ILE 20 ALA 21 TYR 22 GLY 23 ILE 24 ALA 25 GLN 26 SER 27 CYS 28 PHE 29 ASN 30 GLN 31 GLY 32 ALA 33 THR 34 LEU 35 ALA 36 PHE 37 THR 38 TYR 39 LEU 40 ASN 41 GLU 42 SER 43 LEU 44 GLU 45 LYS 46 ARG 47 VAL 48 ARG 49 PRO 50 ILE 51 ALA 52 GLN 53 GLU 54 LEU 55 ASN 56 SER 57 PRO 58 TYR 59 VAL 60 TYR 61 GLU 62 LEU 63 ASP 64 VAL 65 SER 66 LYS 67 GLU 68 GLU 69 HIS 70 PHE 71 LYS 72 SER 73 LEU 74 TYR 75 ASN 76 SER 77 VAL 78 LYS 79 LYS 80 ASP 81 LEU 82 GLY 83 SER 84 LEU 85 ASP 86 PHE 87 ILE 88 VAL 89 HIS 90 SER 91 VAL 92 ALA 93 PHE 94 ALA 95 PRO 96 LYS 97 GLU 98 ALA 99 LEU 100 GLU 101 GLY 102 SER 103 LEU 104 LEU 105 GLU 106 THR 107 SER 108 LYS 109 SER 110 ALA 111 PHE 112 ASN 113 THR 114 ALA 115 MET 116 GLU 117 ILE 118 SER 119 VAL 120 TYR 121 SER 122 LEU 123 ILE 124 GLU 125 LEU 126 THR 127 ASN 128 THR 129 LEU 130 LYS 131 PRO 132 LEU 133 LEU 134 ASN 135 ASN 136 GLY 137 ALA 138 SER 139 VAL 140 LEU 141 THR 142 LEU 143 SER 144 TYR 145 LEU 146 GLY 147 SER 148 THR 149 LYS 150 TYR 151 MET 152 ALA 153 HIS 154 TYR 155 ASN 156 VAL 157 MET 158 GLY 159 LEU 160 ALA 161 LYS 162 ALA 163 ALA 164 LEU 165 GLU 166 SER 167 ALA 168 VAL 169 ARG 170 TYR 171 LEU 172 ALA 173 VAL 174 ASP 175 LEU 176 GLY 177 LYS 178 HIS 179 HIS 180 ILE 181 ARG 182 VAL 183 ASN 184 ALA 185 LEU 186 SER 187 ALA 188 GLY 189 PRO 190 ILE 191 ARG 192 THR 193 LEU 194 ALA 195 SER 196 SER 197 GLY 198 ILE 199 ALA 200 ASP 201 PHE 202 ARG 203 MET 204 ILE 205 LEU 206 LYS 207 TRP 208 ASN 209 GLU 210 ILE 211 ASN 212 ALA 213 PRO 214 LEU 215 ARG 216 LYS 217 ASN 218 VAL 219 SER 220 LEU 221 GLU 222 GLU 223 VAL 224 GLY 225 ASN 226 ALA 227 GLY 228 MET 229 TYR 230 LEU 231 LEU 232 SER 233 SER 234 LEU 235 SER 236 SER 237 GLY 238 VAL 239 SER 240 GLY 241 GLU 242 VAL 243 HIS 244 PHE 245 VAL 246 ASP 247 ALA 248 GLY 249 TYR 250 HIS 251 VAL 252 MET 253 GLY 254 MET 255 GLY 256 ALA 257 VAL 258 GLU 259 GLU 260 LYS 261 ASP 262 ASN 263 LYS 264 ALA 265 THR 266 LEU 267 LEU 268 TRP 269 ASP 270 LEU 271 HIS 272 LYS 273 GLU 274 GLN 275
Unit 2	GLY 2 PHE 3 LEU 4 LYS 5 GLY 6 LYS 7 LYS 8 GLY 9 LEU 10 ILE 11 VAL 12 GLY 13 VAL 14 ALA 15 ASN 16 ASN 17 LYS 18 SER 19 ILE 20 ALA 21 TYR 22 GLY 23 ILE 24 ALA 25 GLN 26 SER 27 CYS 28 PHE 29 ASN 30 GLN 31 GLY 32 ALA 33 THR 34 LEU 35 ALA 36 PHE 37 THR 38 TYR 39 LEU 40 ASN 41 GLU 42 SER 43 LEU 44 GLU 45 LYS 46 ARG 47 VAL 48 ARG 49 PRO 50 ILE 51 ALA 52 GLN 53 GLU 54 LEU 55 ASN 56 SER 57 PRO 58 TYR 59 VAL 60 TYR 61 GLU 62 LEU 63 ASP 64 VAL 65 SER 66 LYS 67 GLU 68 GLU 69 HIS 70 PHE 71 LYS 72 SER 73 LEU 74 TYR 75 ASN 76 SER 77 VAL 78 LYS 79 LYS 80 ASP 81 LEU 82 GLY 83 SER 84 LEU 85 ASP 86 PHE 87 ILE 88 VAL 89 HIS 90 SER 91 VAL 92 ALA 93 PHE 94 ALA 95 PRO 96 LYS 97 GLU 98 ALA 99 LEU 100 GLU 101 GLY 102 SER 103 LEU 104 LEU 105 GLU 106 THR 107 SER 108 LYS 109 SER 110 ALA 111 PHE 112 ASN 113 THR 114 ALA 115 MET 116 GLU 117 ILE 118 SER 119 VAL 120 TYR 121 SER 122 LEU 123 ILE 124 GLU 125 LEU 126 THR 127 ASN 128 THR 129 LEU 130 LYS 131 PRO 132 LEU 133 LEU 134 ASN 135 ASN 136 GLY 137 ALA 138 SER 139 VAL 140 LEU 141 THR 142 LEU 143 SER 144 TYR 145 LEU 146 GLY 147 SER 148 THR 149 LYS 150 TYR 151 MET 152 ALA 153 HIS 154 TYR 155 ASN 156 VAL 157 MET 158 GLY 159 LEU 160 ALA 161 LYS 162 ALA 163 ALA 164 LEU 165 GLU 166 SER 167 ALA 168 VAL 169 ARG 170 TYR 171 LEU 172 ALA 173 VAL 174 ASP 175 LEU 176 GLY 177 LYS 178 HIS 179 HIS 180 ILE 181 ARG 182 VAL 183 ASN 184 ALA 185 LEU 186 SER 187 ALA 188 GLY 189 PRO 190 ILE 191 ARG 192 THR 193 LEU 194 ALA 195 SER 196 SER 197 GLY 198 ILE 199 ALA 200 ASP 201 PHE 202 ARG 203 MET 204 ILE 205 LEU 206 LYS 207 TRP 208 ASN 209 GLU 210 ILE 211 ASN 212 ALA 213 PRO 214 LEU 215 ARG 216 LYS 217 ASN 218 VAL 219 SER 220 LEU 221 GLU 222 GLU 223 VAL 224 GLY 225 ASN 226 ALA 227 GLY 228 MET 229 TYR 230 LEU 231 LEU 232 SER 233 SER 234 LEU 235 SER 236 SER 237 GLY 238 VAL 239 SER 240 GLY 241 GLU 242 VAL 243 HIS 244 PHE 245 VAL 246 ASP 247 ALA 248 GLY 249 TYR 250 HIS 251 VAL 252 MET 253 GLY 254 MET 255 GLY 256 ALA 257 VAL 258 GLU 259 GLU 260 LYS 261 ASP 262 ASN 263 LYS 264 ALA 265 THR 266 LEU 267 LEU 268 TRP 269 ASP 270 LEU 271 HIS 272 LYS 273 GLU 274 GLN 275
Unit 3	GLY 2 PHE 3 LEU 4 LYS 5 GLY 6 LYS 7 LYS 8 GLY 9 LEU 10 ILE 11 VAL 12 GLY 13 VAL 14 ALA 15 ASN 16 ASN 17 LYS 18 SER 19 ILE 20 ALA 21 TYR 22 GLY 23 ILE 24 ALA 25 GLN 26 SER 27 CYS 28 PHE 29 ASN 30 GLN 31 GLY 32 ALA 33 THR 34 LEU 35 ALA 36 PHE 37 THR 38 TYR 39 LEU 40 ASN 41 GLU 42 SER 43 LEU 44 GLU 45 LYS 46 ARG 47 VAL 48 ARG 49 PRO 50 ILE 51 ALA 52 GLN 53 GLU 54 LEU 55 ASN 56 SER 57 PRO 58 TYR 59 VAL 60 TYR 61 GLU 62 LEU 63 ASP 64 VAL 65 SER 66 LYS 67 GLU 68 GLU 69 HIS 70 PHE 71 LYS 72 SER 73 LEU 74 TYR 75 ASN 76 SER 77 VAL 78 LYS 79 LYS 80 ASP 81 LEU 82 GLY 83 SER 84 LEU 85 ASP 86 PHE 87 ILE 88 VAL 89 HIS 90 SER 91 VAL 92 ALA 93 PHE 94 ALA 95 PRO 96 LYS 97 GLU 98 ALA 99 LEU 100 GLU 101 GLY 102 SER 103 LEU 104 LEU 105 GLU 106 THR 107 SER 108 LYS 109 SER 110 ALA 111 PHE 112 ASN 113 THR 114 ALA 115 MET 116 GLU 117 ILE 118 SER 119 VAL 120 TYR 121 SER 122 LEU 123 ILE 124 GLU 125 LEU 126 THR 127 ASN 128 THR 129 LEU 130 LYS 131 PRO 132 LEU 133 LEU 134 ASN 135 ASN 136 GLY 137 ALA 138 SER 139 VAL 140 LEU 141 THR 142 LEU 143 SER 144 TYR 145 LEU 146 GLY 147 SER 148 THR 149 LYS 150 TYR 151 MET 152 ALA 153 HIS 154 TYR 155 ASN 156 VAL 157 MET 158 GLY 159 LEU 160 ALA 161 LYS 162 ALA 163 ALA 164 LEU 165 GLU 166 SER 167 ALA 168 VAL 169 ARG 170 TYR 171 LEU 172 ALA 173 VAL 174 ASP 175 LEU 176 GLY 177 LYS 178 HIS 179 HIS 180 ILE 181 ARG 182 VAL 183 ASN 184 ALA 185 LEU 186 SER 187 ALA 188 GLY 189 PRO 190 ILE 191 ARG 192 THR 193 LEU 194 ALA 195 SER 196 SER 197 GLY 198 ILE 199 ALA 200 ASP 201 PHE 202 ARG 203 MET 204 ILE 205 LEU 206 LYS 207 TRP 208 ASN 209 GLU 210 ILE 211 ASN 212 ALA 213 PRO 214 LEU 215 ARG 216 LYS 217 ASN 218 VAL 219 SER 220 LEU 221 GLU 222 GLU 223 VAL 224 GLY 225 ASN 226 ALA 227 GLY 228 MET 229 TYR 230 LEU 231 LEU 232 SER 233 SER 234 LEU 235 SER 236 SER 237 GLY 238 VAL 239 SER 240 GLY 241 GLU 242 VAL 243 HIS 244 PHE 245 VAL 246 ASP 247 ALA 248 GLY 249 TYR 250 HIS 251 VAL 252 MET 253 GLY 254 MET 255 GLY 256 ALA 257 VAL 258 GLU 259 GLU 260 LYS 261 ASP 262 ASN 263 LYS 264 ALA 265 THR 266 LEU 267 LEU 268 TRP 269 ASP 270 LEU 271 HIS 272 LYS 273 GLU 274 GLN 275
Unit 4	GLY 2 PHE 3 LEU 4 LYS 5 GLY 6 LYS 7 LYS 8 GLY 9 LEU 10 ILE 11 VAL 12 GLY 13 VAL 14 ALA 15 ASN 16 ASN 17 LYS 18 SER 19 ILE 20 ALA 21 TYR 22 GLY 23 ILE 24 ALA 25 GLN 26 SER 27 CYS 28 PHE 29 ASN 30 GLN 31 GLY 32 ALA 33 THR 34 LEU 35 ALA 36 PHE 37 THR 38 TYR 39 LEU 40 ASN 41 GLU 42 SER 43 LEU 44 GLU 45 LYS 46 ARG 47 VAL 48 ARG 49 PRO 50 ILE 51 ALA 52 GLN 53 GLU 54 LEU 55 ASN 56 SER 57 PRO 58 TYR 59 VAL 60 TYR 61 GLU 62 LEU 63 ASP 64 VAL 65 SER 66 LYS 67 GLU 68 GLU 69 HIS 70 PHE 71 LYS 72 SER 73 LEU 74 TYR 75 ASN 76 SER 77 VAL 78 LYS 79 LYS 80 ASP 81 LEU 82 GLY 83 SER 84 LEU 85 ASP 86 PHE 87 ILE 88 VAL 89 HIS 90 SER 91 VAL 92 ALA 93 PHE 94 ALA 95 PRO 96 LYS 97 GLU 98 ALA 99 LEU 100 GLU 101 GLY 102 SER 103 LEU 104 LEU 105 GLU 106 THR 107 SER 108 LYS 109 SER 110 ALA 111 PHE 112 ASN 113 THR 114 ALA 115 MET 116 GLU 117 ILE 118 SER 119 VAL 120 TYR 121 SER 122 LEU 123 ILE 124 GLU 125 LEU 126 THR 127 ASN 128 THR 129 LEU 130 LYS 131 PRO 132 LEU 133 LEU 134 ASN 135 ASN 136 GLY 137 ALA 138 SER 139 VAL 140 LEU 141 THR 142 LEU 143 SER 144 TYR 145 LEU 146 GLY 147 SER 148 THR 149 LYS 150 TYR 151 MET 152 ALA 153 HIS 154 TYR 155 ASN 156 VAL 157 MET 158 GLY 159 LEU 160 ALA 161 LYS 162 ALA 163 ALA 164 LEU 165 GLU 166 SER 167 ALA 168 VAL 169 ARG 170 TYR 171 LEU 172 ALA 173 VAL 174 ASP 175 LEU 176 GLY 177 LYS 178 HIS 179 HIS 180 ILE 181 ARG 182 VAL 183 ASN 184 ALA 185 LEU 186 SER 187 ALA 188 GLY 189 PRO 190 ILE 191 ARG 192 THR 193 LEU 194 ALA 195 SER 196 SER 197 GLY 198 ILE 199 ALA 200 ASP 201 PHE 202 ARG 203 MET 204 ILE 205 LEU 206 LYS 207 TRP 208 ASN 209 GLU 210 ILE 211 ASN 212 ALA 213 PRO 214 LEU 215 ARG 216 LYS 217 ASN 218 VAL 219 SER 220 LEU 221 GLU 222 GLU 223 VAL 224 GLY 225 ASN 226 ALA 227 GLY 228 MET 229 TYR 230 LEU 231 LEU 232 SER 233 SER 234 LEU 235 SER 236 SER 237 GLY 238 VAL 239 SER 240 GLY 241 GLU 242 VAL 243 HIS 244 PHE 245 VAL 246 ASP 247 ALA 248 GLY 249 TYR 250 HIS 251 VAL 252 MET 253 GLY 254 MET 255 GLY 256 ALA 257 VAL 258 GLU 259 GLU 260 LYS 261 ASP 262 ASN 263 LYS 264 ALA 265 THR 266 LEU 267 LEU 268 TRP 269 ASP 270 LEU 271 HIS 272 LYS 273 GLU 274 GLN 275

Ligands

Unit 5	NAD 1780 DCN 2414
Unit 6	NAD 2780 DCN 3414
Unit 7	NAD 3780 DCN 4414
Unit 8	NAD 4780 DCN 5414