Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title A MINIMAL, 'HINGED' HAIRPIN RIBOZYME CONSTRUCT SOLVED WITH MIMICS OF THE PRODUCT STRANDS AT 2.25 ANGSTROMS RESOLUTION
Keywords HAIRPIN RIBOZYME; PRODUCT MIMIC; TRANSITION-STATE STABILIZATION; ACTIVE SITE WATERS; INDUCED FIT, RNA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2P7D     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 31 635 7
2  RNA    B 13 264 13
3  RNA    C 31 635 7
4  RNA    D 19 395 0
5  RNA    P 31 635 7
6  Ligand   5' SUBSTRATE STRAND, PENTAMERIC FRAGMENT  A 2 0 6
7  RNA    B 31 635 7
8  Ligand   RIBOZYME STRAND III  D 1 0 7
9 Water     37 0 37
total       196 3199 91
Nucleic acids
Unit 1 U1 C2 C3 C4 A5 G6 U7 C8 C9 A10 C11 C12 G13 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO102
Unit 2 C2 G3 G4 U5 G6 A7 G8 A9 A10 G11 G12 G13 S9L14
Unit 3 U1 C2 C3 C4 A5 G6 U7 C8 C9 A10 C11 C12 G13 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO102
Unit 4 U31 C32 G33 U34 G35 G36 U37 A38 C39 A40 U41 U42 A43 C44 C45 U46 G47 C48 C49
Unit 5 U1 C2 C3 C4 A5 G6 U7 C8 C9 A10 C11 C12 G13 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO102
Unit 7 U1 C2 C3 C4 A5 G6 U7 C8 C9 A10 C11 C12 G13 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO102
Ligands
Unit 6 SO4103 NA104
Unit 8 NCO101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany