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Sequence, Chains, Asymmetric and Biological Units

Title MMP13 CATALYTIC DOMAIN COMPLEXED WITH 4-{[1-METHYL-2,4-DIOXO PHENYLPROP-1-YN-1-YL)-1,4-DIHYDROQUINAZOLIN-3(2H)-YL]METHYL ACID
Keywords CRYSTAL COMPLEX STRUCTURE, MATRIX METALLOPROTEINASE, MMP13 C DOMAIN, MMP13 SPECIFIC INHIBITOR, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2OZR     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   COLLAGENASE 3  A 167 1329 0
2  Protein   COLLAGENASE 3  B 167 1329 0
3  Protein   COLLAGENASE 3  C 167 1330 0
4  Protein   COLLAGENASE 3  D 166 1318 0
5  Protein   COLLAGENASE 3  E 164 1305 0
6  Protein   COLLAGENASE 3  F 167 1330 0
7  Protein   COLLAGENASE 3  G 166 1321 0
8  Protein   COLLAGENASE 3  H 163 1296 0
9  Ligand   COLLAGENASE 3  A 6 0 37
10  Ligand   COLLAGENASE 3  B 6 0 37
11  Ligand   COLLAGENASE 3  C 7 0 42
12  Ligand   COLLAGENASE 3  D 7 0 42
13  Ligand   COLLAGENASE 3  E 7 0 42
14  Ligand   COLLAGENASE 3  F 7 0 42
15  Ligand   COLLAGENASE 3  G 6 0 37
16  Ligand   COLLAGENASE 3  H 6 0 37
17 Water     1024 0 1024
total       2403 10558 1340
Proteins
Unit 1 TYR83 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 LYS228 SER229 HIS230 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248 ASP249
Unit 2 TYR83 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 LYS228 SER229 HIS230 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248 ASP249
Unit 3 TYR83 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 LYS228 SER229 HIS230 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248 ASP249
Unit 4 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 LYS228 SER229 HIS230 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248 ASP249
Unit 5 TYR83 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248 ASP249
Unit 6 TYR83 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 LYS228 SER229 HIS230 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248 ASP249
Unit 7 TYR83 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 LYS228 SER229 HIS230 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248
Unit 8 TYR83 ASN84 VAL85 PHE86 PRO87 ARG88 THR89 LEU90 LYS91 TRP92 SER93 LYS94 MET95 ASN96 LEU97 THR98 TYR99 ARG100 ILE101 VAL102 ASN103 TYR104 THR105 PRO106 ASP107 MET108 THR109 HIS110 SER111 GLU112 VAL113 GLU114 LYS115 ALA116 PHE117 LYS118 LYS119 ALA120 PHE121 LYS122 VAL123 TRP124 SER125 ASP126 VAL127 THR128 PRO129 LEU130 ASN131 PHE132 THR133 ARG134 LEU135 HIS136 ASP137 GLY138 ILE139 ALA140 ASP141 ILE142 MET143 ILE144 SER145 PHE146 GLY147 ILE148 LYS149 GLU150 HIS151 GLY152 ASP153 PHE154 TYR155 PRO156 PHE157 ASP158 GLY159 PRO160 SER161 GLY162 LEU163 LEU164 ALA165 HIS166 ALA167 PHE168 PRO169 PRO170 GLY171 PRO172 ASN173 TYR174 GLY175 GLY176 ASP177 ALA178 HIS179 PHE180 ASP181 ASP182 ASP183 GLU184 THR185 TRP186 THR187 SER188 SER189 SER190 LYS191 GLY192 TYR193 ASN194 LEU195 PHE196 LEU197 VAL198 ALA199 ALA200 HIS201 GLU202 PHE203 GLY204 HIS205 SER206 LEU207 GLY208 LEU209 ASP210 HIS211 SER212 LYS213 ASP214 PRO215 GLY216 ALA217 LEU218 MET219 PHE220 PRO221 ILE222 TYR223 THR224 TYR225 THR226 GLY227 PHE231 MET232 LEU233 PRO234 ASP235 ASP236 ASP237 VAL238 GLN239 GLY240 ILE241 GLN242 SER243 LEU244 TYR245 GLY246 PRO247 GLY248
Ligands
Unit 9 GG12001 ZN4001 ZN4002 CA4003 CA4004 CA4005
Unit 10 GG12002 ZN4006 ZN4007 CA4008 CA4009 CA4010
Unit 11 GG12003 HAE3001 ZN4011 ZN4012 CA4013 CA4014 CA4015
Unit 12 GG12004 HAE3002 ZN4016 ZN4017 CA4018 CA4019 CA4020
Unit 13 GG12005 HAE3003 ZN4021 ZN4022 CA4023 CA4024 CA4025
Unit 14 GG12006 HAE3004 ZN4026 ZN4027 CA4028 CA4029 CA4030
Unit 15 GG12007 ZN4031 ZN4032 CA4033 CA4034 CA4035
Unit 16 GG12008 ZN4036 ZN4037 CA4038 CA4039 CA4040
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany