2OTD - Sequence, Chains, Asymmetric and Biological Units

• Title: THE CRYSTAL STRUCTURE OF THE GLYCEROPHOSPHODIESTER PHOSPHODI FROM SHIGELLA FLEXNERI 2A
• Keywords: GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, STRUCTURAL GENOMICS PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STR GENOMICS, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2OTD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	A	245	1855	48
2	Protein	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	B	245	1855	48
3	Protein	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	C	245	1855	48
4	Protein	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	D	245	1855	48
5	Ligand	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	A	1	0	5
6	Ligand	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	B	1	0	5
7	Ligand	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	C	1	0	5
8	Ligand	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	D	1	0	5
9	Water			132	0	132
total				1116	7420	344

Proteins

Unit 1	SER 2 ASN 3 TRP 4 PRO 5 TYR 6 PRO 7 ARG 8 ILE 9 VAL 10 ALA 11 HIS 12 ARG 13 GLY 14 GLY 15 GLY 16 LYS 17 LEU 18 ALA 19 PRO 20 GLU 21 ASN 22 THR 23 LEU 24 ALA 25 ALA 26 ILE 27 ASP 28 VAL 29 GLY 30 ALA 31 LYS 32 TYR 33 GLY 34 HIS 35 LYS 36 MSE 37 ILE 38 GLU 39 PHE 40 ASP 41 ALA 42 LYS 43 LEU 44 SER 45 LYS 46 ASP 47 GLY 48 GLU 49 ILE 50 PHE 51 LEU 52 LEU 53 HIS 54 ASP 55 ASP 56 ASN 57 LEU 58 GLU 59 ARG 60 THR 61 SER 62 ASN 63 GLY 64 TRP 65 GLY 66 VAL 67 ALA 68 GLY 69 GLU 70 LEU 71 ASN 72 TRP 73 GLN 74 ASP 75 LEU 76 LEU 77 ARG 78 VAL 79 ASP 80 ALA 81 GLY 82 SER 83 TRP 84 TYR 85 SER 86 LYS 87 ALA 88 PHE 89 LYS 90 GLY 91 GLU 92 PRO 93 LEU 94 PRO 95 LEU 96 LEU 97 SER 98 GLN 99 VAL 100 ALA 101 GLU 102 ARG 103 CYS 104 ARG 105 GLU 106 HIS 107 GLY 108 MSE 109 MSE 110 ALA 111 ASN 112 ILE 113 GLU 114 ILE 115 LYS 116 PRO 117 THR 118 THR 119 GLY 120 THR 121 GLY 122 PRO 123 LEU 124 THR 125 GLY 126 LYS 127 MSE 128 VAL 129 ALA 130 LEU 131 ALA 132 ALA 133 ARG 134 GLN 135 LEU 136 TRP 137 ALA 138 GLY 139 MSE 140 THR 141 PRO 142 PRO 143 LEU 144 LEU 145 SER 146 SER 147 PHE 148 GLU 149 ILE 150 ASP 151 ALA 152 LEU 153 GLU 154 ALA 155 ALA 156 GLN 157 GLN 158 ALA 159 ALA 160 PRO 161 GLU 162 LEU 163 PRO 164 ARG 165 GLY 166 LEU 167 LEU 168 LEU 169 ASP 170 GLU 171 TRP 172 ARG 173 ASP 174 ASP 175 TRP 176 ARG 177 GLU 178 LEU 179 THR 180 ALA 181 ARG 182 LEU 183 GLY 184 CYS 185 VAL 186 SER 187 ILE 188 HIS 189 LEU 190 ASN 191 HIS 192 LYS 193 LEU 194 LEU 195 ASP 196 LYS 197 ALA 198 ARG 199 VAL 200 MSE 201 GLN 202 LEU 203 LYS 204 ASP 205 ALA 206 GLY 207 LEU 208 ARG 209 ILE 210 LEU 211 VAL 212 TYR 213 THR 214 VAL 215 ASN 216 LYS 217 PRO 218 GLN 219 HIS 220 ALA 221 ALA 222 GLU 223 LEU 224 LEU 225 ARG 226 TRP 227 GLY 228 VAL 229 ASP 230 CYS 231 ILE 232 CYS 233 THR 234 ASP 235 ALA 236 ILE 237 ASP 238 VAL 239 ILE 240 GLY 241 PRO 242 ASN 243 PHE 244 THR 245 ALA 246
Unit 2	SER 2 ASN 3 TRP 4 PRO 5 TYR 6 PRO 7 ARG 8 ILE 9 VAL 10 ALA 11 HIS 12 ARG 13 GLY 14 GLY 15 GLY 16 LYS 17 LEU 18 ALA 19 PRO 20 GLU 21 ASN 22 THR 23 LEU 24 ALA 25 ALA 26 ILE 27 ASP 28 VAL 29 GLY 30 ALA 31 LYS 32 TYR 33 GLY 34 HIS 35 LYS 36 MSE 37 ILE 38 GLU 39 PHE 40 ASP 41 ALA 42 LYS 43 LEU 44 SER 45 LYS 46 ASP 47 GLY 48 GLU 49 ILE 50 PHE 51 LEU 52 LEU 53 HIS 54 ASP 55 ASP 56 ASN 57 LEU 58 GLU 59 ARG 60 THR 61 SER 62 ASN 63 GLY 64 TRP 65 GLY 66 VAL 67 ALA 68 GLY 69 GLU 70 LEU 71 ASN 72 TRP 73 GLN 74 ASP 75 LEU 76 LEU 77 ARG 78 VAL 79 ASP 80 ALA 81 GLY 82 SER 83 TRP 84 TYR 85 SER 86 LYS 87 ALA 88 PHE 89 LYS 90 GLY 91 GLU 92 PRO 93 LEU 94 PRO 95 LEU 96 LEU 97 SER 98 GLN 99 VAL 100 ALA 101 GLU 102 ARG 103 CYS 104 ARG 105 GLU 106 HIS 107 GLY 108 MSE 109 MSE 110 ALA 111 ASN 112 ILE 113 GLU 114 ILE 115 LYS 116 PRO 117 THR 118 THR 119 GLY 120 THR 121 GLY 122 PRO 123 LEU 124 THR 125 GLY 126 LYS 127 MSE 128 VAL 129 ALA 130 LEU 131 ALA 132 ALA 133 ARG 134 GLN 135 LEU 136 TRP 137 ALA 138 GLY 139 MSE 140 THR 141 PRO 142 PRO 143 LEU 144 LEU 145 SER 146 SER 147 PHE 148 GLU 149 ILE 150 ASP 151 ALA 152 LEU 153 GLU 154 ALA 155 ALA 156 GLN 157 GLN 158 ALA 159 ALA 160 PRO 161 GLU 162 LEU 163 PRO 164 ARG 165 GLY 166 LEU 167 LEU 168 LEU 169 ASP 170 GLU 171 TRP 172 ARG 173 ASP 174 ASP 175 TRP 176 ARG 177 GLU 178 LEU 179 THR 180 ALA 181 ARG 182 LEU 183 GLY 184 CYS 185 VAL 186 SER 187 ILE 188 HIS 189 LEU 190 ASN 191 HIS 192 LYS 193 LEU 194 LEU 195 ASP 196 LYS 197 ALA 198 ARG 199 VAL 200 MSE 201 GLN 202 LEU 203 LYS 204 ASP 205 ALA 206 GLY 207 LEU 208 ARG 209 ILE 210 LEU 211 VAL 212 TYR 213 THR 214 VAL 215 ASN 216 LYS 217 PRO 218 GLN 219 HIS 220 ALA 221 ALA 222 GLU 223 LEU 224 LEU 225 ARG 226 TRP 227 GLY 228 VAL 229 ASP 230 CYS 231 ILE 232 CYS 233 THR 234 ASP 235 ALA 236 ILE 237 ASP 238 VAL 239 ILE 240 GLY 241 PRO 242 ASN 243 PHE 244 THR 245 ALA 246
Unit 3	SER 2 ASN 3 TRP 4 PRO 5 TYR 6 PRO 7 ARG 8 ILE 9 VAL 10 ALA 11 HIS 12 ARG 13 GLY 14 GLY 15 GLY 16 LYS 17 LEU 18 ALA 19 PRO 20 GLU 21 ASN 22 THR 23 LEU 24 ALA 25 ALA 26 ILE 27 ASP 28 VAL 29 GLY 30 ALA 31 LYS 32 TYR 33 GLY 34 HIS 35 LYS 36 MSE 37 ILE 38 GLU 39 PHE 40 ASP 41 ALA 42 LYS 43 LEU 44 SER 45 LYS 46 ASP 47 GLY 48 GLU 49 ILE 50 PHE 51 LEU 52 LEU 53 HIS 54 ASP 55 ASP 56 ASN 57 LEU 58 GLU 59 ARG 60 THR 61 SER 62 ASN 63 GLY 64 TRP 65 GLY 66 VAL 67 ALA 68 GLY 69 GLU 70 LEU 71 ASN 72 TRP 73 GLN 74 ASP 75 LEU 76 LEU 77 ARG 78 VAL 79 ASP 80 ALA 81 GLY 82 SER 83 TRP 84 TYR 85 SER 86 LYS 87 ALA 88 PHE 89 LYS 90 GLY 91 GLU 92 PRO 93 LEU 94 PRO 95 LEU 96 LEU 97 SER 98 GLN 99 VAL 100 ALA 101 GLU 102 ARG 103 CYS 104 ARG 105 GLU 106 HIS 107 GLY 108 MSE 109 MSE 110 ALA 111 ASN 112 ILE 113 GLU 114 ILE 115 LYS 116 PRO 117 THR 118 THR 119 GLY 120 THR 121 GLY 122 PRO 123 LEU 124 THR 125 GLY 126 LYS 127 MSE 128 VAL 129 ALA 130 LEU 131 ALA 132 ALA 133 ARG 134 GLN 135 LEU 136 TRP 137 ALA 138 GLY 139 MSE 140 THR 141 PRO 142 PRO 143 LEU 144 LEU 145 SER 146 SER 147 PHE 148 GLU 149 ILE 150 ASP 151 ALA 152 LEU 153 GLU 154 ALA 155 ALA 156 GLN 157 GLN 158 ALA 159 ALA 160 PRO 161 GLU 162 LEU 163 PRO 164 ARG 165 GLY 166 LEU 167 LEU 168 LEU 169 ASP 170 GLU 171 TRP 172 ARG 173 ASP 174 ASP 175 TRP 176 ARG 177 GLU 178 LEU 179 THR 180 ALA 181 ARG 182 LEU 183 GLY 184 CYS 185 VAL 186 SER 187 ILE 188 HIS 189 LEU 190 ASN 191 HIS 192 LYS 193 LEU 194 LEU 195 ASP 196 LYS 197 ALA 198 ARG 199 VAL 200 MSE 201 GLN 202 LEU 203 LYS 204 ASP 205 ALA 206 GLY 207 LEU 208 ARG 209 ILE 210 LEU 211 VAL 212 TYR 213 THR 214 VAL 215 ASN 216 LYS 217 PRO 218 GLN 219 HIS 220 ALA 221 ALA 222 GLU 223 LEU 224 LEU 225 ARG 226 TRP 227 GLY 228 VAL 229 ASP 230 CYS 231 ILE 232 CYS 233 THR 234 ASP 235 ALA 236 ILE 237 ASP 238 VAL 239 ILE 240 GLY 241 PRO 242 ASN 243 PHE 244 THR 245 ALA 246
Unit 4	SER 2 ASN 3 TRP 4 PRO 5 TYR 6 PRO 7 ARG 8 ILE 9 VAL 10 ALA 11 HIS 12 ARG 13 GLY 14 GLY 15 GLY 16 LYS 17 LEU 18 ALA 19 PRO 20 GLU 21 ASN 22 THR 23 LEU 24 ALA 25 ALA 26 ILE 27 ASP 28 VAL 29 GLY 30 ALA 31 LYS 32 TYR 33 GLY 34 HIS 35 LYS 36 MSE 37 ILE 38 GLU 39 PHE 40 ASP 41 ALA 42 LYS 43 LEU 44 SER 45 LYS 46 ASP 47 GLY 48 GLU 49 ILE 50 PHE 51 LEU 52 LEU 53 HIS 54 ASP 55 ASP 56 ASN 57 LEU 58 GLU 59 ARG 60 THR 61 SER 62 ASN 63 GLY 64 TRP 65 GLY 66 VAL 67 ALA 68 GLY 69 GLU 70 LEU 71 ASN 72 TRP 73 GLN 74 ASP 75 LEU 76 LEU 77 ARG 78 VAL 79 ASP 80 ALA 81 GLY 82 SER 83 TRP 84 TYR 85 SER 86 LYS 87 ALA 88 PHE 89 LYS 90 GLY 91 GLU 92 PRO 93 LEU 94 PRO 95 LEU 96 LEU 97 SER 98 GLN 99 VAL 100 ALA 101 GLU 102 ARG 103 CYS 104 ARG 105 GLU 106 HIS 107 GLY 108 MSE 109 MSE 110 ALA 111 ASN 112 ILE 113 GLU 114 ILE 115 LYS 116 PRO 117 THR 118 THR 119 GLY 120 THR 121 GLY 122 PRO 123 LEU 124 THR 125 GLY 126 LYS 127 MSE 128 VAL 129 ALA 130 LEU 131 ALA 132 ALA 133 ARG 134 GLN 135 LEU 136 TRP 137 ALA 138 GLY 139 MSE 140 THR 141 PRO 142 PRO 143 LEU 144 LEU 145 SER 146 SER 147 PHE 148 GLU 149 ILE 150 ASP 151 ALA 152 LEU 153 GLU 154 ALA 155 ALA 156 GLN 157 GLN 158 ALA 159 ALA 160 PRO 161 GLU 162 LEU 163 PRO 164 ARG 165 GLY 166 LEU 167 LEU 168 LEU 169 ASP 170 GLU 171 TRP 172 ARG 173 ASP 174 ASP 175 TRP 176 ARG 177 GLU 178 LEU 179 THR 180 ALA 181 ARG 182 LEU 183 GLY 184 CYS 185 VAL 186 SER 187 ILE 188 HIS 189 LEU 190 ASN 191 HIS 192 LYS 193 LEU 194 LEU 195 ASP 196 LYS 197 ALA 198 ARG 199 VAL 200 MSE 201 GLN 202 LEU 203 LYS 204 ASP 205 ALA 206 GLY 207 LEU 208 ARG 209 ILE 210 LEU 211 VAL 212 TYR 213 THR 214 VAL 215 ASN 216 LYS 217 PRO 218 GLN 219 HIS 220 ALA 221 ALA 222 GLU 223 LEU 224 LEU 225 ARG 226 TRP 227 GLY 228 VAL 229 ASP 230 CYS 231 ILE 232 CYS 233 THR 234 ASP 235 ALA 236 ILE 237 ASP 238 VAL 239 ILE 240 GLY 241 PRO 242 ASN 243 PHE 244 THR 245 ALA 246

Ligands

Unit 5	PO4 301
Unit 6	PO4 301
Unit 7	PO4 301
Unit 8	PO4 301