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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE ANTI-C-MYC ANTIBODY 9E10 FAB FRAGMENT/EPITOPE PEPTIDE COMPLEX REVEALS A NOVEL BINDING MODE DOMINATED BY THE HEAVY CHAIN HYPERVARIABLE LOOPS
Keywords ANTIGEN-ANTIBODY COMPLEX, ANTIGEN RECOGNITION, MYC-TAG, LONG CDR H3, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2OR9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MONOCLONAL ANTI-C-MYC ANTIBODY 9E10  L 216 1671 0
2  Protein   MONOCLONAL ANTI-C-MYC ANTIBODY 9E10  H 221 1698 0
3  Protein   MONOCLONAL ANTI-C-MYC ANTIBODY 9E10  M 218 1687 0
4  Protein   MONOCLONAL ANTI-C-MYC ANTIBODY 9E10  I 228 1752 0
5  Protein   SYNTHETIC EPITOPE PEPTIDE OF 9E10  P 11 92 0
6 Water     282 0 282
total       1176 6900 282

Proteins
Unit 1 ASP1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 SER10 LEU11 ALA12 VAL13 SER14 LEU15 GLY16 GLN17 ARG18 ALA19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLU27 SER27A VAL27B ASP27C ASN27D TYR28 GLY29 PHE30 SER31 PHE32 MET33 ASN34 TRP35 PHE36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 PRO43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ALA50 ILE51 SER52 ASN53 ARG54 GLY55 SER56 GLY57 VAL58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 SER72 LEU73 ASN74 ILE75 HIS76 PRO77 VAL78 GLU79 GLU80 ASP81 ASP82 PRO83 ALA84 MET85 TYR86 PHE87 CYS88 GLN89 GLN90 THR91 LYS92 GLU93 VAL94 PRO95 TRP96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212
Unit 2 GLU1 VAL2 HIS3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 ASP10 LEU11 VAL12 LYS13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 HIS31 TYR32 GLY33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 THR40 PRO41 ASP42 LYS43 ARG44 LEU45 GLU46 TRP47 VAL48 ALA49 THR50 ILE51 GLY52 SER52A ARG53 GLY54 THR55 TYR56 THR57 HIS58 TYR59 PRO60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 ASP74 LYS75 ASN76 ALA77 LEU78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C LYS83 SER84 GLU85 ASP86 THR87 ALA88 MET89 TYR90 TYR91 CYS92 ALA93 ARG94 ARG95 SER96 GLU97 PHE98 TYR99 TYR100 TYR100A GLY100B ASN100C THR100D TYR100E TYR100F TYR100G SER100H ALA100I MET100J ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 ALA107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 PRO118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 GLY127 SER128 SER134 MET135 VAL136 THR137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 GLY144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 THR153 TRP154 ASN155 SER156 GLY157 SER158 LEU159 SER160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 ASP173 LEU174 TYR175 THR176 LEU177 SER178 SER179 SER180 VAL181 THR182 VAL183 PRO184 SER185 SER186 THR187 TRP188 PRO189 SER190 GLU191 THR192 VAL193 THR194 CYS195 ASN196 VAL197 ALA198 HIS199 PRO200 ALA201 SER202 SER203 THR204 LYS205 VAL206 ASP207 LYS208 LYS209 ILE210 VAL211 PRO212
Unit 3 ASP1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 SER10 LEU11 ALA12 VAL13 SER14 LEU15 GLY16 GLN17 ARG18 ALA19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLU27 SER27A VAL27B ASP27C ASN27D TYR28 GLY29 PHE30 SER31 PHE32 MET33 ASN34 TRP35 PHE36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 PRO43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ALA50 ILE51 SER52 ASN53 ARG54 GLY55 SER56 GLY57 VAL58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 SER72 LEU73 ASN74 ILE75 HIS76 PRO77 VAL78 GLU79 GLU80 ASP81 ASP82 PRO83 ALA84 MET85 TYR86 PHE87 CYS88 GLN89 GLN90 THR91 LYS92 GLU93 VAL94 PRO95 TRP96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213 CYS214
Unit 4 GLU1 VAL2 HIS3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 ASP10 LEU11 VAL12 LYS13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 HIS31 TYR32 GLY33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 THR40 PRO41 ASP42 LYS43 ARG44 LEU45 GLU46 TRP47 VAL48 ALA49 THR50 ILE51 GLY52 SER52A ARG53 GLY54 THR55 TYR56 THR57 HIS58 TYR59 PRO60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 ASP74 LYS75 ASN76 ALA77 LEU78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C LYS83 SER84 GLU85 ASP86 THR87 ALA88 MET89 TYR90 TYR91 CYS92 ALA93 ARG94 ARG95 SER96 GLU97 PHE98 TYR99 TYR100 TYR100A GLY100B ASN100C THR100D TYR100E TYR100F TYR100G SER100H ALA100I MET100J ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 ALA107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 PRO118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 GLY127 SER128 ALA129 ALA130 GLN131 THR132 ASN133 SER134 MET135 VAL136 THR137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 GLY144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 THR153 TRP154 ASN155 SER156 GLY157 SER158 LEU159 SER160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 ASP173 LEU174 TYR175 THR176 LEU177 SER178 SER179 SER180 VAL181 THR182 VAL183 PRO184 SER185 SER186 THR187 TRP188 PRO189 SER190 GLU191 THR192 VAL193 THR194 CYS195 ASN196 VAL197 ALA198 HIS199 PRO200 ALA201 SER202 SER203 THR204 LYS205 VAL206 ASP207 LYS208 LYS209 ILE210 VAL211 PRO212 ARG213 ASP214
Unit 5 GLU1 GLN2 LYS3 LEU4 ILE5 SER6 GLU7 GLU8 ASP9 LEU10 ASN11

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany